mRNA_M-pyrifera_M_contig1406.6159.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1406.6159.1
Unique NamemRNA_M-pyrifera_M_contig1406.6159.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1406.6159.1 vs. uniprot
Match: A0A1D8D5D6_9EUKA (Uncharacterized protein n=1 Tax=Paramoeba pemaquidensis TaxID=180228 RepID=A0A1D8D5D6_9EUKA)

HSP 1 Score: 1115 bits (2884), Expect = 0.000e+0
Identity = 652/1129 (57.75%), Postives = 818/1129 (72.45%), Query Frame = 1 
Query:    1 MVINLKQKTLFNIINILGNHKNSKSYKTNYKTKLLFSKIYNSILILRIQNLFFLSKFKTFNLFFFNYIKEYHLGIKQQFKSFNNLKNNFKLFIYLLYKSSLVSFDSL-KISNITNSFIPLNNVFSYNNYYPYY-NLNSNLNNSFFYNFLYKDTFKLSSFSLINKFKNYTYLRTNKKKRFKQKESEKLSLLRDNLTLVHDNPFRLKFYYRYFEYKRLHSY*NKEAFLKKKFKYFNPTISTSSSLGSNKEDSKDLYLLHFFYKFRKARKLTDKYLLYKKK*FINF*LQAKIKRFQLASYKSKSKSKKTQLKFYKVYLNTIYTIVDNTTNVKKAPLASHYKKYSFDIKSKQKQLFFKFCKNSNLYQKVTTTNSEFLYAKGFKKNNLNNFLSNYTNLKEVNLSNNFHLYD-SFKKIKNFKRFNLPSTLV*KKKRSGQLFNLNTNNLTKSFFFNYFKKNKSFRIKFKYIR*LNTQKMFKS*KFNKYLSYKKINLKSIKSNLNNINFGNSYTN------DNNSNYLH-IISNASNKINS*SYLNKDISFIKNSKTFNLIVDSLDYSTNKYLKNFSFYKSNKTLNLEYAY*NVFKDKRFNFNKIKIKNKKNHFSLNKISKALFKHSWFSIKNQIKKSTKLKGFHNLVPVYNYFFIKKVVSLYKKLFISKLLFSDLILKKPLISKTPNSYFAFKNPDILTNVYNIRSIDKKFGFKKRKERNLFNQLRKYKNIKILLTSKLTKLDSFLLSKNSNIKSNNFNLLQYKIKFNLLNIKKIINKLKVSLKKISTTNFKKNLFLNSGFKISHFKKSSFINFLQCFSKTKQKKNVLNFFLDSILLNSNKNILSYIGLNS-LYLNKKNISLNKLRLFNLKKAVN-TLDFSASLKKNKDLLNSLVLNKLKKKNFLKSNWGLXXXXXXNYFTFLKLFKYFSFYKVINNNNYFLGFGKLSNYLNINNENIFSLCNFFMYNFLNYVT*EKENFFYASNDYIGINQQNINIIHYLKSNNQTLDINKN------ISLSSNNNTTLIHDYDIINKKIGSFTNLLNSKHFLIKYNSLLLLNPLVKIYNN-----SXXXXXXXXXXXXXXXXLTNSDIVILN*YLLMNSFIDLEKKSSTFKKLYSGLLNKFENI 3318
            M+++LKQKTLFNII  LG HKN K YK  YK +LLF+ I+NSIL+LRI+N  +LSKF+TFNLFF N+IKEYHLGIKQ FK FN+LKNNFKLF YLLY+SSL+SFDS+ K++N  +S I L N  SYNNYYPYY + N  L+NSFFYN +YKDTFKL SFSLINKFKNYTYLR+NKKKRFKQKESEKL++LRDNLT + DNP+RLKFYY+YFEYKRLHSY +KEAFLKKKFKYFNP     +SLG N  ++KD  LLHFFY++RK+RKLT+KYLLYKKK FINF LQAKIKRF L SYK K K+KKT+LKFYKVYLN+ Y+ V N +N  K  L   YKKY F  K    +LF +FC N+N++  V            FK  NL N L+ Y N+      +N HLY+ SFKKIKNFKRFN+P T   ++KR  QLF  NTN LTK+FFFN  KKNK FRIKFKY++ L+TQK  KS KF+K+LSYKK  +K+I+ NL N N      N      +NN NY++ II +ASNK++  S  N+++  IK SK FN IV++L++STNKY+KNFSFYKSNK LN EYAY N+FK+ + NFNKI+IK K      NKISK+LFK SWF IKN+    +K KG+HNLVP+YNYFF+KKV+SLYKKLFISK+LFSD   KKP   K        KN +IL +++NIR IDKK+GFKKRKERNLFN+L+KYKNIK LL +KL KLD+F ++  +   +NNFN+ QYKIK NLL+IKKII+KLK+ +KK++TTN KK  F N   K+S+ ++SSFINFL+CF K  +K    N FLD I  N+N  ++ +IG  S +Y  K  ++ NKLRL   KK +N +    ++ KKNK L NS+VL K  K  FLK NWGL      NY  FLKLFKYFSFYKV+N+NNY+LG+GKLSN+LN+NNENIFS CN FMYNFLNY T EK+NFF   ND + INQ N++II+ +KS +  +D+ ++       S    +++  I++YDIIN KI  F ++LNS+H++IKYNSLLL N L+ + NN     +                LT+SDIVIL  YL +++ +++ K +++FK+LYSGL  KF NI
Sbjct:    1 MIMHLKQKTLFNIITTLGTHKNFKLYKNKYKIQLLFNTIHNSILLLRIKNFSYLSKFRTFNLFFLNFIKEYHLGIKQNFKFFNSLKNNFKLFFYLLYRSSLLSFDSITKLNNSISSSISLRNSSSYNNYYPYYYSSNLGLSNSFFYNSVYKDTFKLFSFSLINKFKNYTYLRSNKKKRFKQKESEKLAVLRDNLTAIKDNPYRLKFYYKYFEYKRLHSYWDKEAFLKKKFKYFNP-----ASLGLNNNNTKDSCLLHFFYQYRKSRKLTNKYLLYKKKIFINFWLQAKIKRFSLPSYKLKLKNKKTRLKFYKVYLNSSYSRVKNLSNFNKYSLVDKYKKYLFKNKKHTYKLFLQFCLNNNIFHNVR-----------FKNKNLLNLLNRYHNMVNKGSKDNKHLYNNSFKKIKNFKRFNIPPTFFWRRKRYEQLFKSNTNKLTKTFFFNQLKKNKVFRIKFKYLKWLHTQKKIKSWKFDKHLSYKKNYIKAIRGNLKNSNLRRCSNNKVILNPNNNKNYINDIIFDASNKMHYWSTSNQNLFHIKKSKRFNSIVNALEFSTNKYMKNFSFYKSNKRLNSEYAYWNIFKENKINFNKIRIKRKNKFVRFNKISKSLFKRSWFIIKNRKNSFSKSKGYHNLVPIYNYFFLKKVISLYKKLFISKILFSDFFFKKPYNIKQD---LVNKNINILNSIHNIRLIDKKYGFKKRKERNLFNRLKKYKNIKTLLANKLNKLDNFAINNGNKKTTNNFNISQYKIKLNLLHIKKIISKLKIYIKKLTTTNLKKTTFPNRSLKMSNLRRSSFINFLKCFPKKSRKITFSNSFLDRINFNNNSRLVDFIGFKSPIYAKKNLLNSNKLRLVMFKKYLNKSAGLFSNFKKNKRLFNSVVLAKFTKNYFLKYNWGLNTLLKKNYLNFLKLFKYFSFYKVVNDNNYYLGYGKLSNHLNMNNENIFSTCNLFMYNFLNYTTAEKDNFFNKYNDSVSINQ-NLDIINTIKSISIRIDLEESEEEVSSASEEGEDDSHSIYEYDIINNKIELFPDILNSQHYMIKYNSLLLFNSLLSLNNNYLYKKTPLNLCNEKKNIEDIFKLTSSDIVILKWYLFIDNPVEINKLNNSFKELYSGLFKKFNNI 1109
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BLAST of mRNA_M-pyrifera_M_contig1406.6159.1 vs. uniprot
Match: A0A5P8HCF8_9EUKA (Uncharacterized protein n=1 Tax=Paramoeba aparasomata TaxID=2583407 RepID=A0A5P8HCF8_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 1.130e-10
Identity = 80/241 (33.20%), Postives = 126/241 (52.28%), Query Frame = 1 
Query:  247 NNLKNNFKLFIYLLYKSSLVSFDSL--KISNITNSFIPLNNVFSYNNYYPY-YNLNSNLNNSFFYNFLYKDTFKLSSFSLINKFKNYTYLRTNKKKRF--KQKESEKLSLLRDNLTLVHDNPFRLK--FYYRYFEYKR-LHSY*NKEAFLKKKFKYFNPTISTSSSLGSNKEDSKDLYLLHFFYKFRKARKLTDKYLLYKKK*FINF*LQAKIKRFQLASYKSKSKSK---KTQLKFYKVY 936
            N+LKNNFKLF+Y LY + +  + ++  ++  ITN ++  +N      YYPY Y  NS +    +Y     + + L S + + K  NY  L + K KRF  K K+ E   L +  + L +     +K  FYYR+ + K+ LH +  KEAFLKKKFKYF        SLG+       + L+H FYK +  +K   K  ++KK   ++F  Q  IK+++  ++  ++ S    + + KFY  Y
Sbjct:   88 NSLKNNFKLFLYYLYNNKIYYYKNILNRLQTITNMYVDNSNC-----YYPYLYYCNSIIRFCNYYTGY--NNYILPSSTKVKK--NYISLYSKKTKRFPKKNKDKELFKLFKFRVALFNKPKVSIKGKFYYRFRDPKKYLHPFWQKEAFLKKKFKYF--------SLGA-------VCLVHAFYKHKGLQK-KKKLNIFKKAGLLHFWFQKLIKKYKFRTHIVQTTSLNNFRLKYKFYNYY 303
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1406.6159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1D8D5D6_9EUKA0.000e+057.75Uncharacterized protein n=1 Tax=Paramoeba pemaquid... [more]
A0A5P8HCF8_9EUKA1.130e-1033.20Uncharacterized protein n=1 Tax=Paramoeba aparasom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1406contigM-pyrifera_M_contig1406:7931..11248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size3318
Cds size654
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815834.3403068-CDS-M-pyrifera_M_contig1406:7930..85841622815834.3403068-CDS-M-pyrifera_M_contig1406:7930..8584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1406 7931..8584 +
1692277596.565455-CDS-M-pyrifera_M_contig1406:7930..85841692277596.565455-CDS-M-pyrifera_M_contig1406:7930..8584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1406 7931..8584 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815834.352967-UTR-M-pyrifera_M_contig1406:8584..112481622815834.352967-UTR-M-pyrifera_M_contig1406:8584..11248Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1406 8585..11248 +
1692277596.576496-UTR-M-pyrifera_M_contig1406:8584..112481692277596.576496-UTR-M-pyrifera_M_contig1406:8584..11248Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1406 8585..11248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1406.6159.1prot_M-pyrifera_M_contig1406.6159.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1406 7931..8584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1406.6159.1

>prot_M-pyrifera_M_contig1406.6159.1 ID=prot_M-pyrifera_M_contig1406.6159.1|Name=mRNA_M-pyrifera_M_contig1406.6159.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp
MVINLKQKTLFNIINILGNHKNSKSYKTNYKTKLLFSKIYNSILILRIQN
LFFLSKFKTFNLFFFNYIKEYHLGIKQQFKSFNNLKNNFKLFIYLLYKSS
LVSFDSLKISNITNSFIPLNNVFSYNNYYPYYNLNSNLNNSFFYNFLYKD
TFKLSSFSLINKFKNYTYLRTNKKKRFKQKESEKLSLLRDNLTLVHDNPF
RLKFYYRYFEYKRLHSY*
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mRNA from alignment at M-pyrifera_M_contig1406:7931..11248+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1406.6159.1 ID=mRNA_M-pyrifera_M_contig1406.6159.1|Name=mRNA_M-pyrifera_M_contig1406.6159.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3318bp|location=Sequence derived from alignment at M-pyrifera_M_contig1406:7931..11248+ (Macrocystis pyrifera P11B4 male)
ATGGTTATAAATTTAAAACAAAAAACATTATTTAATATTATTAATATTTT
AGGTAATCATAAAAATTCTAAATCATATAAAACTAATTATAAAACTAAAT
TATTATTTTCTAAAATTTATAATTCTATTTTAATTTTAAGAATACAAAAT
TTATTTTTTTTATCAAAATTTAAAACTTTTAATTTATTCTTTTTTAATTA
CATCAAAGAATATCACCTTGGTATTAAACAACAATTTAAATCTTTTAATA
ATTTAAAAAATAATTTTAAGTTATTTATTTATTTATTATATAAAAGTTCT
TTAGTATCGTTCGATTCTTTAAAAATATCAAATATTACCAATAGTTTTAT
ACCTTTAAACAACGTTTTTAGTTATAATAATTATTACCCTTATTATAATT
TAAATTCTAATTTAAATAATTCTTTTTTTTATAATTTTTTATATAAAGAT
ACTTTCAAGTTATCGAGTTTTTCATTAATTAATAAATTTAAGAATTATAC
TTATTTAAGAACAAATAAAAAAAAAAGGTTTAAACAAAAAGAATCGGAAA
AATTATCATTATTAAGGGATAATTTAACGTTAGTTCATGATAATCCTTTT
AGGTTAAAATTTTATTATAGATATTTTGAATATAAAAGATTACATTCTTA
CTGAAATAAAGAAGCTTTCTTAAAAAAAAAATTCAAATATTTTAATCCCA
CTATTTCGACTTCTTCTTCTCTAGGTTCTAATAAAGAAGATAGTAAGGAT
TTATATCTTTTACATTTTTTTTATAAGTTTAGAAAAGCTAGAAAGTTAAC
AGATAAATATTTGTTATATAAAAAAAAATGATTTATAAATTTCTGATTAC
AAGCTAAAATTAAACGTTTTCAATTAGCTTCTTATAAATCAAAATCTAAA
AGTAAAAAAACACAATTAAAATTTTATAAAGTATATTTAAATACTATTTA
TACTATTGTGGATAACACTACTAATGTAAAAAAAGCACCTTTAGCCTCAC
ATTATAAAAAATATTCATTTGATATAAAATCTAAACAAAAGCAACTTTTT
TTTAAATTTTGTAAAAATTCGAATTTATATCAAAAAGTTACTACAACTAA
TAGTGAGTTCTTATACGCAAAGGGCTTTAAAAAAAATAATTTAAATAATT
TTTTATCTAATTATACCAATTTAAAAGAAGTTAATTTAAGTAATAATTTT
CATCTATATGATTCCTTTAAAAAAATTAAAAATTTTAAACGATTTAACTT
ACCTTCTACATTAGTATGAAAAAAAAAAAGAAGTGGACAACTTTTCAATT
TAAATACTAATAATTTAACAAAATCGTTTTTCTTTAATTATTTTAAAAAA
AATAAATCTTTTCGTATCAAATTTAAATATATTAGGTGATTAAATACACA
AAAAATGTTTAAAAGTTGAAAATTCAATAAGTATTTATCTTATAAAAAAA
TCAATCTTAAAAGTATTAAAAGTAATTTAAATAATATAAATTTTGGGAAT
TCTTATACAAATGATAATAATTCTAATTATTTACATATAATTTCTAATGC
ATCAAATAAAATAAATAGTTGATCTTATTTAAATAAAGATATATCTTTTA
TTAAAAATTCAAAAACATTTAATTTAATTGTAGATTCTTTAGACTATTCT
ACTAATAAATATTTAAAAAATTTTAGTTTTTATAAATCTAATAAAACATT
AAATCTAGAATATGCTTATTGAAATGTTTTTAAAGATAAGAGGTTTAATT
TTAATAAAATAAAAATAAAAAATAAAAAAAATCATTTTAGTTTAAATAAA
ATATCTAAAGCTTTATTTAAGCATAGTTGGTTTAGTATAAAAAATCAAAT
TAAAAAATCTACTAAATTAAAAGGGTTTCATAATTTAGTACCTGTATATA
ATTATTTTTTTATTAAAAAGGTTGTATCTTTATATAAAAAATTATTTATT
TCAAAATTATTATTTTCTGATTTAATTCTTAAAAAACCTTTAATTAGCAA
AACTCCTAATTCATATTTTGCATTTAAAAATCCTGACATTTTGACTAATG
TTTATAATATACGTTCTATAGATAAAAAATTTGGTTTTAAAAAAAGAAAA
GAAAGAAATTTATTTAATCAATTACGTAAATATAAAAATATTAAAATTTT
ATTAACTTCTAAATTAACAAAATTAGATAGTTTTTTATTATCTAAAAATA
GTAATATAAAATCTAATAATTTTAATTTATTACAATATAAAATTAAATTT
AATTTATTAAATATAAAAAAAATAATTAATAAATTAAAAGTTTCTTTAAA
AAAAATATCTACTACAAATTTTAAAAAAAATTTATTTTTAAATTCTGGTT
TTAAAATATCACATTTTAAAAAAAGTAGTTTTATTAATTTTTTACAATGT
TTTTCTAAAACTAAACAAAAAAAAAATGTTTTAAATTTTTTTTTAGATTC
GATTCTTTTAAATAGTAATAAAAACATATTAAGTTACATAGGTTTGAATT
CTTTATATTTAAATAAAAAAAATATAAGTTTAAATAAGTTACGTTTATTT
AATTTAAAAAAAGCTGTAAATACTTTAGATTTCTCAGCATCTTTAAAAAA
AAATAAAGATTTATTAAATAGTTTAGTATTAAATAAATTAAAAAAGAAAA
ATTTTTTAAAATCTAATTGGGGATTGAATTCCTTATTAAAAAAAAATTAT
TTTACTTTTCTAAAATTATTTAAATATTTTAGTTTTTACAAAGTAATAAA
TAATAATAACTATTTCTTAGGTTTTGGTAAACTATCTAATTATTTAAATA
TAAATAATGAAAATATCTTTAGTTTATGTAATTTTTTTATGTATAATTTT
TTAAATTATGTTACTTGAGAAAAAGAAAACTTTTTTTATGCAAGTAATGA
TTATATTGGTATAAACCAACAAAATATTAATATCATACATTATTTAAAGT
CTAATAATCAAACTTTAGATATTAATAAAAACATTTCTTTATCGAGTAAT
AATAATACAACTTTGATTCATGATTATGATATTATTAATAAAAAAATAGG
TTCGTTTACTAACTTATTAAATAGTAAACATTTTTTAATAAAATATAATA
GTTTATTATTATTGAATCCTTTAGTAAAAATATATAATAATAGTTTATTT
AAAAAAAATAAAACAAAAATATTTTCTAATACCATTTTAAAATTAACTAA
TTCTGATATAGTTATTTTAAATTGATATTTATTAATGAATAGTTTTATTG
ATTTAGAAAAAAAAAGTTCTACTTTTAAAAAATTATATTCAGGTTTATTA
AATAAATTTGAAAATATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1406:7931..11248+

>mRNA_M-pyrifera_M_contig1406.6159.1 ID=mRNA_M-pyrifera_M_contig1406.6159.1|Name=mRNA_M-pyrifera_M_contig1406.6159.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1308bp|location=Sequence derived from alignment at M-pyrifera_M_contig1406:7931..11248+ (Macrocystis pyrifera P11B4 male)
ATGGTTATAAATTTAAAACAAAAAACATTATTTAATATTATTAATATTTT
AGGTAATCATAAAAATTCTAAATCATATAAAACTAATTATAAAACTAAAT
TATTATTTTCTAAAATTTATAATTCTATTTTAATTTTAAGAATACAAAAT
TTATTTTTTTTATCAAAATTTAAAACTTTTAATTTATTCTTTTTTAATTA
CATCAAAGAATATCACCTTGGTATTAAACAACAATTTAAATCTTTTAATA
ATTTAAAAAATAATTTTAAGTTATTTATTTATTTATTATATAAAAGTTCT
TTAGTATCGTTCGATTCTTTAAAAATATCAAATATTACCAATAGTTTTAT
ACCTTTAAACAACGTTTTTAGTTATAATAATTATTACCCTTATTATAATT
TAAATTCTAATTTAAATAATTCTTTTTTTTATAATTTTTTATATAAAGAT
ACTTTCAAGTTATCGAGTTTTTCATTAATTAATAAATTTAAGAATTATAC
TTATTTAAGAACAAATAAAAAAAAAAGGTTTAAACAAAAAGAATCGGAAA
AATTATCATTATTAAGGGATAATTTAACGTTAGTTCATGATAATCCTTTT
AGGTTAAAATTTTATTATAGATATTTTGAATATAAAAGATTACATTCTTA
CTGAATGGTTATAAATTTAAAACAAAAAACATTATTTAATATTATTAATA
TTTTAGGTAATCATAAAAATTCTAAATCATATAAAACTAATTATAAAACT
AAATTATTATTTTCTAAAATTTATAATTCTATTTTAATTTTAAGAATACA
AAATTTATTTTTTTTATCAAAATTTAAAACTTTTAATTTATTCTTTTTTA
ATTACATCAAAGAATATCACCTTGGTATTAAACAACAATTTAAATCTTTT
AATAATTTAAAAAATAATTTTAAGTTATTTATTTATTTATTATATAAAAG
TTCTTTAGTATCGTTCGATTCTTTAAAAATATCAAATATTACCAATAGTT
TTATACCTTTAAACAACGTTTTTAGTTATAATAATTATTACCCTTATTAT
AATTTAAATTCTAATTTAAATAATTCTTTTTTTTATAATTTTTTATATAA
AGATACTTTCAAGTTATCGAGTTTTTCATTAATTAATAAATTTAAGAATT
ATACTTATTTAAGAACAAATAAAAAAAAAAGGTTTAAACAAAAAGAATCG
GAAAAATTATCATTATTAAGGGATAATTTAACGTTAGTTCATGATAATCC
TTTTAGGTTAAAATTTTATTATAGATATTTTGAATATAAAAGATTACATT
CTTACTGA
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