mRNA_M-pyrifera_M_contig14052.6156.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14052.6156.1
Unique NamemRNA_M-pyrifera_M_contig14052.6156.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig14052.6156.1 vs. uniprot
Match: D7G9G9_ECTSI (Neural cell expressed, developmentally down-regulated 4-like, isoform CRA_e n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.280e-16
Identity = 46/95 (48.42%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:    1 VRWSPPRGARRGSADEANNMTNVFDA--------DDTISSTSRGERQSAGLPLGWERRTTTNGREYFVNHGARITQWTPPEQNNPTIGEYKVERP 261
             RWSPP+  RR  +  +++      A        D+++SSTSRG  ++AGLP GWE+RTT  GREYFVNH  RITQW PPE      GE KV  P
Sbjct:  462 ARWSPPKSRRRRDSRTSSDAAAARSAGAGAGDGLDESLSSTSRGGGRAAGLPRGWEKRTTPAGREYFVNHDLRITQWAPPEG---AAGEQKVPYP 553
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BLAST of mRNA_M-pyrifera_M_contig14052.6156.1 vs. uniprot
Match: A0A6H5K0H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.180e-14
Identity = 44/97 (45.36%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:    1 VRWSPPRGARRGSADEANNMTNVFDA----------DDTISSTSRGERQSAGLPLGWERRTTTNGREYFVNHGARITQWTPPEQNNPTIGEYKVERP 261
            VRWSPP+  RR  +  +++                 D+++SSTS G    AGLP GWE+R T  GREYFVNH  RITQW PPE      GE KV  P
Sbjct:  978 VRWSPPKSRRRRDSRTSSDAAXXXXXXXXXXXXXXLDESLSSTSGGGGSPAGLPRGWEKRNTPAGREYFVNHELRITQWAPPEG---AAGEQKVPYP 1071
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BLAST of mRNA_M-pyrifera_M_contig14052.6156.1 vs. uniprot
Match: A0A6J2MM90_9CHIR (E3 ubiquitin-protein ligase n=4 Tax=Phyllostomidae TaxID=9415 RepID=A0A6J2MM90_9CHIR)

HSP 1 Score: 57.4 bits (137), Expect = 2.060e-7
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:    7 WSPPRGARRGSADEANNMTNVFDADDTISSTSRGERQSAG-LPLGWERRTTTNGREYFVNHGARITQWTPP 216
            W   R  R+G+  + N    ++   D  +++   E    G LP GWE+RT TNGR YFVNH  RITQW  P
Sbjct:  360 WQLHRSQRQGAIQQFNQRF-IYGTQDLFATSQNKEFDPLGPLPPGWEKRTDTNGRVYFVNHNTRITQWEDP 429
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BLAST of mRNA_M-pyrifera_M_contig14052.6156.1 vs. uniprot
Match: A0A3Q3W0B0_MOLML (E3 ubiquitin-protein ligase n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3W0B0_MOLML)

HSP 1 Score: 57.0 bits (136), Expect = 2.800e-7
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    7 WSPPRGARRGSADEANNMTNVFDADDTISSTSRGERQSAG-LPLGWERRTTTNGREYFVNHGARITQWTPP 216
            W   R   +G+  + N    +F   D +++T+  E    G LPLGWE+RT TNGR YFV+H  R TQW  P
Sbjct:  270 WQHQRSQLQGAMQQFNQRF-IFGLQDQLAATANKEFDPLGPLPLGWEKRTDTNGRVYFVHHPTRTTQWEDP 339
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BLAST of mRNA_M-pyrifera_M_contig14052.6156.1 vs. uniprot
Match: A0A3Q4AS55_MOLML (E3 ubiquitin-protein ligase n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q4AS55_MOLML)

HSP 1 Score: 57.0 bits (136), Expect = 2.800e-7
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    7 WSPPRGARRGSADEANNMTNVFDADDTISSTSRGERQSAG-LPLGWERRTTTNGREYFVNHGARITQWTPP 216
            W   R   +G+  + N    +F   D +++T+  E    G LPLGWE+RT TNGR YFV+H  R TQW  P
Sbjct:  323 WQHQRSQLQGAMQQFNQRF-IFGLQDQLAATANKEFDPLGPLPLGWEKRTDTNGRVYFVHHPTRTTQWEDP 392
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BLAST of mRNA_M-pyrifera_M_contig14052.6156.1 vs. uniprot
Match: A0A8C4E1J1_DICLA (E3 ubiquitin-protein ligase n=6 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4E1J1_DICLA)

HSP 1 Score: 55.5 bits (132), Expect = 9.770e-7
Identity = 30/71 (42.25%), Postives = 38/71 (53.52%), Query Frame = 1 
Query:    7 WSPPRGARRGSADEANNMTNVFDADDTISSTSRGERQSAG-LPLGWERRTTTNGREYFVNHGARITQWTPP 216
            W   R   +G+  + N    +F   D +S+T   E    G LP GWE+RT TNGR YFV+H  R TQW  P
Sbjct:  325 WQHQRSQLQGAMQQFNQRF-IFGLQDQVSATQNKEFDPLGPLPHGWEKRTDTNGRVYFVHHPTRTTQWEDP 394
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BLAST of mRNA_M-pyrifera_M_contig14052.6156.1 vs. uniprot
Match: A0A3Q3XN86_MOLML (E3 ubiquitin-protein ligase n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3XN86_MOLML)

HSP 1 Score: 55.5 bits (132), Expect = 9.780e-7
Identity = 30/71 (42.25%), Postives = 38/71 (53.52%), Query Frame = 1 
Query:    7 WSPPRGARRGSADEANNMTNVFDADDTISSTSRGERQSAG-LPLGWERRTTTNGREYFVNHGARITQWTPP 216
            W   R   +G+  + N    +F   D +S+T   E    G LP GWE+RT TNGR YFV+H  R TQW  P
Sbjct:  332 WQHQRSQLQGAMQQFNQRF-IFGLQDQVSATQNKEFDPLGPLPHGWEKRTDTNGRVYFVHHPTRTTQWEDP 401
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BLAST of mRNA_M-pyrifera_M_contig14052.6156.1 vs. uniprot
Match: F7AY66_ORNAN (E3 ubiquitin-protein ligase n=4 Tax=Monotremata TaxID=9255 RepID=F7AY66_ORNAN)

HSP 1 Score: 55.5 bits (132), Expect = 9.810e-7
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 1 
Query:    7 WSPPRGARRGSADEANNMTNVFDADDTISSTSRGERQSAG-LPLGWERRTTTNGREYFVNHGARITQWTPP 216
            W   R   +G+  + N    ++   D  +ST   E    G LP GWE+RT +NGR YFVNH  R+TQW  P
Sbjct:  376 WQLQRSQLQGAMQQFNQRF-IYGNQDLFTSTQNKEFDPLGPLPTGWEKRTDSNGRLYFVNHNTRVTQWEDP 445
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BLAST of mRNA_M-pyrifera_M_contig14052.6156.1 vs. uniprot
Match: UPI001E8D6659 (itchy E3 ubiquitin protein ligase b isoform X1 n=3 Tax=Micropterus TaxID=27705 RepID=UPI001E8D6659)

HSP 1 Score: 55.5 bits (132), Expect = 9.830e-7
Identity = 30/71 (42.25%), Postives = 38/71 (53.52%), Query Frame = 1 
Query:    7 WSPPRGARRGSADEANNMTNVFDADDTISSTSRGERQSAG-LPLGWERRTTTNGREYFVNHGARITQWTPP 216
            W   R   +G+  + N    +F   D +S+T   E    G LP GWE+RT TNGR YFV+H  R TQW  P
Sbjct:  415 WQHQRSQLQGAMQQFNQRF-IFGLQDQVSATQNKEFDPLGPLPHGWEKRTDTNGRVYFVHHPTRATQWEDP 484
[Close]
BLAST of mRNA_M-pyrifera_M_contig14052.6156.1 vs. uniprot
Match: A0A3B4UNL9_SERDU (E3 ubiquitin-protein ligase n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3B4UNL9_SERDU)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-6
Identity = 30/71 (42.25%), Postives = 38/71 (53.52%), Query Frame = 1 
Query:    7 WSPPRGARRGSADEANNMTNVFDADDTISSTSRGERQSAG-LPLGWERRTTTNGREYFVNHGARITQWTPP 216
            W   R   +G+  + N    +F   D +S+T   E    G LP GWE+RT TNGR YFV+H  R TQW  P
Sbjct:  323 WQHQRSQLQGAMQQFNQRF-IFGLQDQVSATQNKEFDPLGPLPHGWEKRTDTNGRVYFVHHPTRSTQWEDP 392
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14052.6156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9G9_ECTSI3.280e-1648.42Neural cell expressed, developmentally down-regula... [more]
A0A6H5K0H6_9PHAE9.180e-1445.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6J2MM90_9CHIR2.060e-742.25E3 ubiquitin-protein ligase n=4 Tax=Phyllostomidae... [more]
A0A3Q3W0B0_MOLML2.800e-742.25E3 ubiquitin-protein ligase n=1 Tax=Mola mola TaxI... [more]
A0A3Q4AS55_MOLML2.800e-742.25E3 ubiquitin-protein ligase n=1 Tax=Mola mola TaxI... [more]
A0A8C4E1J1_DICLA9.770e-742.25E3 ubiquitin-protein ligase n=6 Tax=Dicentrarchus ... [more]
A0A3Q3XN86_MOLML9.780e-742.25E3 ubiquitin-protein ligase n=1 Tax=Mola mola TaxI... [more]
F7AY66_ORNAN9.810e-740.85E3 ubiquitin-protein ligase n=4 Tax=Monotremata Ta... [more]
UPI001E8D66599.830e-742.25itchy E3 ubiquitin protein ligase b isoform X1 n=3... [more]
A0A3B4UNL9_SERDU1.330e-642.25E3 ubiquitin-protein ligase n=2 Tax=Percomorphacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14052contigM-pyrifera_M_contig14052:4620..5192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue3.1e-15
Seed eggNOG ortholog2880.D7G9G9
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0940@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815834.0905597-CDS-M-pyrifera_M_contig14052:4620..47291622815834.0905597-CDS-M-pyrifera_M_contig14052:4620..4729Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14052 4621..4729 -
1692277596.4340506-CDS-M-pyrifera_M_contig14052:4620..47291692277596.4340506-CDS-M-pyrifera_M_contig14052:4620..4729Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14052 4621..4729 -
1622815834.101592-CDS-M-pyrifera_M_contig14052:4998..51921622815834.101592-CDS-M-pyrifera_M_contig14052:4998..5192Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14052 4999..5192 -
1692277596.4449768-CDS-M-pyrifera_M_contig14052:4998..51921692277596.4449768-CDS-M-pyrifera_M_contig14052:4998..5192Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14052 4999..5192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14052.6156.1prot_M-pyrifera_M_contig14052.6156.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14052 4621..5192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14052.6156.1

>prot_M-pyrifera_M_contig14052.6156.1 ID=prot_M-pyrifera_M_contig14052.6156.1|Name=mRNA_M-pyrifera_M_contig14052.6156.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
VRWSPPRGARRGSADEANNMTNVFDADDTISSTSRGERQSAGLPLGWERR
TTTNGREYFVNHGARITQWTPPEQNNPTIGEYKVERPEQQAPMQVIQPNI
T
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mRNA from alignment at M-pyrifera_M_contig14052:4620..5192-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14052.6156.1 ID=mRNA_M-pyrifera_M_contig14052.6156.1|Name=mRNA_M-pyrifera_M_contig14052.6156.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=573bp|location=Sequence derived from alignment at M-pyrifera_M_contig14052:4620..5192- (Macrocystis pyrifera P11B4 male)
GTAAGATGGTCGCCGCCCAGGGGAGCACGTCGCGGTTCTGCAGACGAAGC
AAACAATATGACTAATGTTTTCGATGCGGACGACACTATTAGCAGCACTT
CAAGAGGAGAGAGGCAATCTGCAGGCCTGCCCCTTGGGTGGGAGCGGAGA
ACGACCACAAATGGGCGGGAGTACTTCGTCAACCATGGCGCGAGGTTAGA
TTATTTTCGTCTTGACGTGCAGACAGGCGGGGGAGCACGTAGAGCTTCGA
TCGCGGCAGGTTCATACCGCGTAACTGATGAGAACGGGATCGTCGACGTG
TGATTCCTTGAGAATCACCCCCTTGTGCGGTTCGCTCGCTGTATATCAGT
ACCGCACAGCACAGCACCGTCCCTTCTTAAGTATGCGATGGATTCTCTTG
TTCATGTCGATGGTGTTTCGGTTCTCCCTTGCGCATGCATGACTTGCACG
TATTTTTGCGCAGGATCACACAGTGGACGCCGCCGGAACAAAACAATCCA
ACCATCGGAGAATACAAGGTGGAGCGGCCAGAACAGCAGGCACCGATGCA
AGTGATTCAGCCGAATATTACAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14052:4620..5192-

>mRNA_M-pyrifera_M_contig14052.6156.1 ID=mRNA_M-pyrifera_M_contig14052.6156.1|Name=mRNA_M-pyrifera_M_contig14052.6156.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig14052:4620..5192- (Macrocystis pyrifera P11B4 male)
GTAAGATGGTCGCCGCCCAGGGGAGCACGTCGCGGTTCTGCAGACGAAGC
AAACAATATGACTAATGTTTTCGATGCGGACGACACTATTAGCAGCACTT
CAAGAGGAGAGAGGCAATCTGCAGGCCTGCCCCTTGGGTGGGAGCGGAGA
ACGACCACAAATGGGCGGGAGTACTTCGTCAACCATGGCGCGAGGTAAGA
TGGTCGCCGCCCAGGGGAGCACGTCGCGGTTCTGCAGACGAAGCAAACAA
TATGACTAATGTTTTCGATGCGGACGACACTATTAGCAGCACTTCAAGAG
GAGAGAGGCAATCTGCAGGCCTGCCCCTTGGGTGGGAGCGGAGAACGACC
ACAAATGGGCGGGAGTACTTCGTCAACCATGGCGCGAGGATCACACAGTG
GACGCCGCCGGAACAAAACAATCCAACCATCGGAGAATACAAGGTGGAGC
GGCCAGAACAGCAGGCACCGATGCAAGTGATTCAGCCGAATATTACAGAT
CACACAGTGGACGCCGCCGGAACAAAACAATCCAACCATCGGAGAATACA
AGGTGGAGCGGCCAGAACAGCAGGCACCGATGCAAGTGATTCAGCCGAAT
ATTACA
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