mRNA_M-pyrifera_M_contig1404.6155.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1404.6155.1
Unique NamemRNA_M-pyrifera_M_contig1404.6155.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1404.6155.1 vs. uniprot
Match: A0A6H5JJD6_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJD6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.430e-19
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 DAISEAVREGHVERVLAFLETGGNANLSSPKTGRSLLHIACRQGYAEVASLLLSKGANAGATTLRHLTP 207
            DA+  AV++G V+ V  +LE+G +ANL++P TGR+LLHIACRQGY  +ASLLLS GAN GATTLR LTP
Sbjct:    8 DAVRHAVKDGDVDAVREYLESGVDANLANPNTGRTLLHIACRQGYPAMASLLLSNGANPGATTLRQLTP 76
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1404.6155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJD6_9PHAE2.430e-1965.22RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1404contigM-pyrifera_M_contig1404:25649..26320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue3.1e-17
Seed eggNOG ortholog2880.D7FLD3
Preferred nameMYO16
KEGG koko:K08803,ko:K17481
KEGG Pathwayko04140,ko05200,ko05219,map04140,map05200,map05219
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
EC2.7.11.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko04812
Exons2
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.710743-CDS-M-pyrifera_M_contig1404:25648..257771622815833.710743-CDS-M-pyrifera_M_contig1404:25648..25777Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1404 25649..25777 +
1692277596.2141194-CDS-M-pyrifera_M_contig1404:25648..257771692277596.2141194-CDS-M-pyrifera_M_contig1404:25648..25777Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1404 25649..25777 +
1622815833.722081-CDS-M-pyrifera_M_contig1404:25969..263201622815833.722081-CDS-M-pyrifera_M_contig1404:25969..26320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1404 25970..26320 +
1692277596.2262774-CDS-M-pyrifera_M_contig1404:25969..263201692277596.2262774-CDS-M-pyrifera_M_contig1404:25969..26320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1404 25970..26320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1404.6155.1prot_M-pyrifera_M_contig1404.6155.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1404 25649..26320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1404.6155.1

>prot_M-pyrifera_M_contig1404.6155.1 ID=prot_M-pyrifera_M_contig1404.6155.1|Name=mRNA_M-pyrifera_M_contig1404.6155.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
DAISEAVREGHVERVLAFLETGGNANLSSPKTGRSLLHIACRQGYAEVAS
LLLSKGANAGATTLRHLTPLHLASHQGHMKVARLLLEAWAPVDDRDQAGT
SPLHLSAQKGHADVVRLLLQCGADKDGLDESGWTPLFFAAWKGHEAVARM
LLHAGANSRV
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mRNA from alignment at M-pyrifera_M_contig1404:25649..26320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1404.6155.1 ID=mRNA_M-pyrifera_M_contig1404.6155.1|Name=mRNA_M-pyrifera_M_contig1404.6155.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig1404:25649..26320+ (Macrocystis pyrifera P11B4 male)
GACGCCATCTCAGAAGCTGTACGGGAGGGCCACGTCGAGCGCGTACTCGC
CTTCTTGGAAACCGGGGGCAACGCCAATCTTTCTAGCCCGAAAACCGGGA
GGAGCCTGCTTCATATCGCGTGTCGCCAGGTAATCGCCGTTGTATATTTG
AATATATACCTCTGGTATGTACAGTACTGCTGTACTCGCTTGATACAACA
GCAACGTGCTACGGAAGTCAGTTCATGCACGAGTAGCCAAGGGTTTTTAC
GACCAGCAGTCCTACAATCCCAGACGTCGTAATTCAGTCCTTCCCAAAAC
GTTGTATTGTGGTGGCTACAGGGATACGCGGAGGTGGCGTCGCTCCTTTT
GTCGAAAGGGGCCAATGCTGGGGCGACCACTTTGCGGCACTTGACGCCGC
TGCATCTCGCGTCTCATCAAGGACACATGAAAGTGGCGCGTTTGTTGCTC
GAGGCCTGGGCGCCTGTGGACGATCGAGATCAGGCAGGAACATCCCCTCT
CCACTTGTCCGCCCAGAAGGGACACGCCGATGTTGTCCGCCTGCTGTTGC
AGTGCGGTGCTGACAAAGACGGGTTAGATGAATCCGGATGGACGCCACTT
TTTTTCGCTGCGTGGAAGGGTCACGAGGCGGTGGCCCGAATGTTACTCCA
TGCCGGAGCAAATTCTAGGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1404:25649..26320+

>mRNA_M-pyrifera_M_contig1404.6155.1 ID=mRNA_M-pyrifera_M_contig1404.6155.1|Name=mRNA_M-pyrifera_M_contig1404.6155.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig1404:25649..26320+ (Macrocystis pyrifera P11B4 male)
GACGCCATCTCAGAAGCTGTACGGGAGGGCCACGTCGAGCGCGTACTCGC
CTTCTTGGAAACCGGGGGCAACGCCAATCTTTCTAGCCCGAAAACCGGGA
GGAGCCTGCTTCATATCGCGTGTCGCCAGGACGCCATCTCAGAAGCTGTA
CGGGAGGGCCACGTCGAGCGCGTACTCGCCTTCTTGGAAACCGGGGGCAA
CGCCAATCTTTCTAGCCCGAAAACCGGGAGGAGCCTGCTTCATATCGCGT
GTCGCCAGGGATACGCGGAGGTGGCGTCGCTCCTTTTGTCGAAAGGGGCC
AATGCTGGGGCGACCACTTTGCGGCACTTGACGCCGCTGCATCTCGCGTC
TCATCAAGGACACATGAAAGTGGCGCGTTTGTTGCTCGAGGCCTGGGCGC
CTGTGGACGATCGAGATCAGGCAGGAACATCCCCTCTCCACTTGTCCGCC
CAGAAGGGACACGCCGATGTTGTCCGCCTGCTGTTGCAGTGCGGTGCTGA
CAAAGACGGGTTAGATGAATCCGGATGGACGCCACTTTTTTTCGCTGCGT
GGAAGGGTCACGAGGCGGTGGCCCGAATGTTACTCCATGCCGGAGCAAAT
TCTAGGGTGGGATACGCGGAGGTGGCGTCGCTCCTTTTGTCGAAAGGGGC
CAATGCTGGGGCGACCACTTTGCGGCACTTGACGCCGCTGCATCTCGCGT
CTCATCAAGGACACATGAAAGTGGCGCGTTTGTTGCTCGAGGCCTGGGCG
CCTGTGGACGATCGAGATCAGGCAGGAACATCCCCTCTCCACTTGTCCGC
CCAGAAGGGACACGCCGATGTTGTCCGCCTGCTGTTGCAGTGCGGTGCTG
ACAAAGACGGGTTAGATGAATCCGGATGGACGCCACTTTTTTTCGCTGCG
TGGAAGGGTCACGAGGCGGTGGCCCGAATGTTACTCCATGCCGGAGCAAA
TTCTAGGGTG
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