mRNA_M-pyrifera_M_contig1404.6153.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1404.6153.1
Unique NamemRNA_M-pyrifera_M_contig1404.6153.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1404.6153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1404contigM-pyrifera_M_contig1404:15106..15770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size665
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1404.6153.1prot_M-pyrifera_M_contig1404.6153.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1404 15196..15546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.8703654-UTR-M-pyrifera_M_contig1404:15105..151951622815833.8703654-UTR-M-pyrifera_M_contig1404:15105..15195Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1404 15106..15195 +
1692277596.3090742-UTR-M-pyrifera_M_contig1404:15105..151951692277596.3090742-UTR-M-pyrifera_M_contig1404:15105..15195Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1404 15106..15195 +
1622815833.8926725-UTR-M-pyrifera_M_contig1404:15546..157701622815833.8926725-UTR-M-pyrifera_M_contig1404:15546..15770Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1404 15547..15770 +
1692277596.3289337-UTR-M-pyrifera_M_contig1404:15546..157701692277596.3289337-UTR-M-pyrifera_M_contig1404:15546..15770Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1404 15547..15770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.8825684-CDS-M-pyrifera_M_contig1404:15195..155461622815833.8825684-CDS-M-pyrifera_M_contig1404:15195..15546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1404 15196..15546 +
1692277596.3197935-CDS-M-pyrifera_M_contig1404:15195..155461692277596.3197935-CDS-M-pyrifera_M_contig1404:15195..15546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1404 15196..15546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1404.6153.1

>prot_M-pyrifera_M_contig1404.6153.1 ID=prot_M-pyrifera_M_contig1404.6153.1|Name=mRNA_M-pyrifera_M_contig1404.6153.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MASSSRRQSFMPSMGASVMHAFSSTVSSLVINILSMHHAGAGSGGTSIVD
HAIAHIAGCRVAHKSLGVSDEPTMHVRDMAKNNWKRGSMAGKQSEARRQA
RKGPSVTRSTQANRTK*
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mRNA from alignment at M-pyrifera_M_contig1404:15106..15770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1404.6153.1 ID=mRNA_M-pyrifera_M_contig1404.6153.1|Name=mRNA_M-pyrifera_M_contig1404.6153.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=665bp|location=Sequence derived from alignment at M-pyrifera_M_contig1404:15106..15770+ (Macrocystis pyrifera P11B4 male)
CGTGACACGGAAACTGGCCTGCCACATGCGAAAAAATAACGGGTGTACCC
TCGCTCCGGGGCACAACCACGCGGTGATCCTCTCTGCAGCATGGCATCGT
CATCTCGCAGGCAGTCGTTCATGCCAAGCATGGGAGCATCCGTCATGCAT
GCCTTTTCGTCAACCGTCTCATCACTCGTCATCAACATCTTAAGCATGCA
TCACGCCGGCGCCGGCTCAGGCGGGACGAGCATTGTGGATCATGCGATTG
CACATATCGCGGGATGCAGGGTGGCGCACAAGTCTCTTGGAGTGTCTGAT
GAACCAACCATGCACGTTCGTGATATGGCGAAAAACAATTGGAAGCGGGG
CAGCATGGCGGGGAAGCAAAGCGAGGCGAGGAGGCAAGCGAGAAAGGGTC
CAAGTGTTACTCGTAGCACGCAGGCGAACAGAACTAAATAACTACCACGG
AGCACGGCGGCAGGGAGGACGGAGGGTTAGATATCAAACAGCGTGGGGGT
GGGGAGGGGGTTAAGATGCGAACATTTCCTTCAAAGACTCACTCGGGTAA
CACCGCCAAGGCAAAACGCAATAGACCGACCCCCCACGCCTGCCACCACG
ACGCACCTTGTCAAATTAACGGGGGGATCAGCAGAACCCGTTCAGGTCTG
TGGCGGGGGGTTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1404:15106..15770+

>mRNA_M-pyrifera_M_contig1404.6153.1 ID=mRNA_M-pyrifera_M_contig1404.6153.1|Name=mRNA_M-pyrifera_M_contig1404.6153.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig1404:15106..15770+ (Macrocystis pyrifera P11B4 male)
ATGGCATCGTCATCTCGCAGGCAGTCGTTCATGCCAAGCATGGGAGCATC
CGTCATGCATGCCTTTTCGTCAACCGTCTCATCACTCGTCATCAACATCT
TAAGCATGCATCACGCCGGCGCCGGCTCAGGCGGGACGAGCATTGTGGAT
CATGCGATTGCACATATCGCGGGATGCAGGGTGGCGCACAAGTCTCTTGG
AGTGTCTGATGAACCAACCATGCACGTTCGTGATATGGCGAAAAACAATT
GGAAGCGGGGCAGCATGGCGGGGAAGCAAAGCGAGGCGAGGAGGCAAGCG
AGAAAGGGTCCAAGTGTTACTCGTAGCACGCAGGCGAACAGAACTAAATA
AATGGCATCGTCATCTCGCAGGCAGTCGTTCATGCCAAGCATGGGAGCAT
CCGTCATGCATGCCTTTTCGTCAACCGTCTCATCACTCGTCATCAACATC
TTAAGCATGCATCACGCCGGCGCCGGCTCAGGCGGGACGAGCATTGTGGA
TCATGCGATTGCACATATCGCGGGATGCAGGGTGGCGCACAAGTCTCTTG
GAGTGTCTGATGAACCAACCATGCACGTTCGTGATATGGCGAAAAACAAT
TGGAAGCGGGGCAGCATGGCGGGGAAGCAAAGCGAGGCGAGGAGGCAAGC
GAGAAAGGGTCCAAGTGTTACTCGTAGCACGCAGGCGAACAGAACTAAAT
AA
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