mRNA_M-pyrifera_M_contig1404.6152.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1404.6152.1
Unique NamemRNA_M-pyrifera_M_contig1404.6152.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1404.6152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1404contigM-pyrifera_M_contig1404:13056..13579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size524
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1404.6152.1prot_M-pyrifera_M_contig1404.6152.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1404 13112..13438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.8156435-UTR-M-pyrifera_M_contig1404:13055..131111622815833.8156435-UTR-M-pyrifera_M_contig1404:13055..13111Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1404 13056..13111 +
1692277596.2797933-UTR-M-pyrifera_M_contig1404:13055..131111692277596.2797933-UTR-M-pyrifera_M_contig1404:13055..13111Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1404 13056..13111 +
1622815833.83726-UTR-M-pyrifera_M_contig1404:13438..135791622815833.83726-UTR-M-pyrifera_M_contig1404:13438..13579Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1404 13439..13579 +
1692277596.2993214-UTR-M-pyrifera_M_contig1404:13438..135791692277596.2993214-UTR-M-pyrifera_M_contig1404:13438..13579Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1404 13439..13579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.826609-CDS-M-pyrifera_M_contig1404:13111..134381622815833.826609-CDS-M-pyrifera_M_contig1404:13111..13438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1404 13112..13438 +
1692277596.2893918-CDS-M-pyrifera_M_contig1404:13111..134381692277596.2893918-CDS-M-pyrifera_M_contig1404:13111..13438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1404 13112..13438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1404.6152.1

>prot_M-pyrifera_M_contig1404.6152.1 ID=prot_M-pyrifera_M_contig1404.6152.1|Name=mRNA_M-pyrifera_M_contig1404.6152.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MPLCRCAEAECLPKIKCPCCPECIYLHLGRFQYHRTGTPVCVCLNRVPLQ
YVMCCLVSLLSSCVSLAPGNKRSVENDLAVEQRSKDSVTCHGSVIKLSHR
NFGLCFSW*
back to top

mRNA from alignment at M-pyrifera_M_contig1404:13056..13579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1404.6152.1 ID=mRNA_M-pyrifera_M_contig1404.6152.1|Name=mRNA_M-pyrifera_M_contig1404.6152.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=524bp|location=Sequence derived from alignment at M-pyrifera_M_contig1404:13056..13579+ (Macrocystis pyrifera P11B4 male)
CAATTTTTTAGTTGCTTGCTGGTTGATTCAGGACAGCTTCGACGTGTACC
GCACGCATGCCGTTGTGTCGCTGTGCGGAAGCAGAATGTCTCCCAAAAAT
CAAGTGCCCCTGCTGTCCTGAATGTATTTATTTGCATTTGGGCCGTTTCC
AGTATCATCGTACGGGAACTCCTGTGTGCGTGTGCCTCAATCGTGTCCCG
TTACAGTATGTAATGTGCTGCTTAGTCTCGCTGCTGTCCTCGTGCGTCAG
CCTCGCACCTGGCAATAAGCGCTCAGTTGAGAACGACCTTGCGGTAGAAC
AGCGAAGCAAAGACTCTGTCACGTGTCACGGGTCAGTCATCAAGTTATCC
CACAGAAATTTTGGACTCTGCTTCTCATGGTAAGCATCGGACGTCGTGTT
GTATCGTGGAAAAGTCAGTGCTCACCCCGGCAAAGAACAAAATGGAAATG
GAGCGGTGCGCACATGACAAAATGACAACACTGTCTGGGGCGGTACCTAA
ATAACCATTTAAAGGTGATGGACT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1404:13056..13579+

>mRNA_M-pyrifera_M_contig1404.6152.1 ID=mRNA_M-pyrifera_M_contig1404.6152.1|Name=mRNA_M-pyrifera_M_contig1404.6152.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig1404:13056..13579+ (Macrocystis pyrifera P11B4 male)
ATGCCGTTGTGTCGCTGTGCGGAAGCAGAATGTCTCCCAAAAATCAAGTG
CCCCTGCTGTCCTGAATGTATTTATTTGCATTTGGGCCGTTTCCAGTATC
ATCGTACGGGAACTCCTGTGTGCGTGTGCCTCAATCGTGTCCCGTTACAG
TATGTAATGTGCTGCTTAGTCTCGCTGCTGTCCTCGTGCGTCAGCCTCGC
ACCTGGCAATAAGCGCTCAGTTGAGAACGACCTTGCGGTAGAACAGCGAA
GCAAAGACTCTGTCACGTGTCACGGGTCAGTCATCAAGTTATCCCACAGA
AATTTTGGACTCTGCTTCTCATGGTAAATGCCGTTGTGTCGCTGTGCGGA
AGCAGAATGTCTCCCAAAAATCAAGTGCCCCTGCTGTCCTGAATGTATTT
ATTTGCATTTGGGCCGTTTCCAGTATCATCGTACGGGAACTCCTGTGTGC
GTGTGCCTCAATCGTGTCCCGTTACAGTATGTAATGTGCTGCTTAGTCTC
GCTGCTGTCCTCGTGCGTCAGCCTCGCACCTGGCAATAAGCGCTCAGTTG
AGAACGACCTTGCGGTAGAACAGCGAAGCAAAGACTCTGTCACGTGTCAC
GGGTCAGTCATCAAGTTATCCCACAGAAATTTTGGACTCTGCTTCTCATG
GTAA
back to top