mRNA_M-pyrifera_M_contig1404.6151.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1404.6151.1
Unique NamemRNA_M-pyrifera_M_contig1404.6151.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1404.6151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1404contigM-pyrifera_M_contig1404:10628..11134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1404.6151.1prot_M-pyrifera_M_contig1404.6151.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1404 10736..11086 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.7520888-UTR-M-pyrifera_M_contig1404:10627..107351622815833.7520888-UTR-M-pyrifera_M_contig1404:10627..10735Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1404 10628..10735 +
1692277596.2356472-UTR-M-pyrifera_M_contig1404:10627..107351692277596.2356472-UTR-M-pyrifera_M_contig1404:10627..10735Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1404 10628..10735 +
1622815833.7763836-UTR-M-pyrifera_M_contig1404:11086..111341622815833.7763836-UTR-M-pyrifera_M_contig1404:11086..11134Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1404 11087..11134 +
1692277596.270707-UTR-M-pyrifera_M_contig1404:11086..111341692277596.270707-UTR-M-pyrifera_M_contig1404:11086..11134Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1404 11087..11134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.7666798-CDS-M-pyrifera_M_contig1404:10735..110861622815833.7666798-CDS-M-pyrifera_M_contig1404:10735..11086Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1404 10736..11086 +
1692277596.2542872-CDS-M-pyrifera_M_contig1404:10735..110861692277596.2542872-CDS-M-pyrifera_M_contig1404:10735..11086Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1404 10736..11086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1404.6151.1

>prot_M-pyrifera_M_contig1404.6151.1 ID=prot_M-pyrifera_M_contig1404.6151.1|Name=mRNA_M-pyrifera_M_contig1404.6151.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MKCIRSLFQVSSSFFLSEIAVGVGERDHSAPQQVGFGSDRASVCSLSVLL
VVVLCGGTGCSSVTQICNFQIRDSAIQTEKLFYLPLQYEYVLCRIGTLTQ
VFLHWIKAFAMYIPVT*
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mRNA from alignment at M-pyrifera_M_contig1404:10628..11134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1404.6151.1 ID=mRNA_M-pyrifera_M_contig1404.6151.1|Name=mRNA_M-pyrifera_M_contig1404.6151.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig1404:10628..11134+ (Macrocystis pyrifera P11B4 male)
CAGTTAGTTGTTGATTGGTGTTTTTGTTGCTGTTGGGTGCGTTCGTTCTT
CTGCCCTTTTTCTTCTTTTTTAGGAATTTAACTGTTAATACCAATATGGT
TGCCCTCCATGAAATGCATTCGATCGCTGTTCCAAGTTTCCTCGTCTTTT
TTTTTAAGTGAAATCGCAGTTGGCGTTGGTGAGAGGGACCACTCGGCACC
CCAGCAGGTGGGGTTTGGCTCAGACCGAGCGTCTGTGTGCTCGCTATCGG
TACTACTCGTGGTCGTACTGTGCGGGGGTACGGGATGTTCGTCAGTAACA
CAGATTTGCAATTTCCAAATTAGAGACTCAGCCATACAAACTGAGAAATT
ATTTTACTTGCCTTTACAGTATGAATACGTACTCTGCCGAATTGGCACGC
TTACGCAAGTATTTTTGCATTGGATTAAAGCTTTTGCAATGTACATTCCA
GTAACTTAGTAACCGTGCCTTTTAATTTGATATAAAAAGTACCAGGTACG
TTTTTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1404:10628..11134+

>mRNA_M-pyrifera_M_contig1404.6151.1 ID=mRNA_M-pyrifera_M_contig1404.6151.1|Name=mRNA_M-pyrifera_M_contig1404.6151.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig1404:10628..11134+ (Macrocystis pyrifera P11B4 male)
ATGAAATGCATTCGATCGCTGTTCCAAGTTTCCTCGTCTTTTTTTTTAAG
TGAAATCGCAGTTGGCGTTGGTGAGAGGGACCACTCGGCACCCCAGCAGG
TGGGGTTTGGCTCAGACCGAGCGTCTGTGTGCTCGCTATCGGTACTACTC
GTGGTCGTACTGTGCGGGGGTACGGGATGTTCGTCAGTAACACAGATTTG
CAATTTCCAAATTAGAGACTCAGCCATACAAACTGAGAAATTATTTTACT
TGCCTTTACAGTATGAATACGTACTCTGCCGAATTGGCACGCTTACGCAA
GTATTTTTGCATTGGATTAAAGCTTTTGCAATGTACATTCCAGTAACTTA
GATGAAATGCATTCGATCGCTGTTCCAAGTTTCCTCGTCTTTTTTTTTAA
GTGAAATCGCAGTTGGCGTTGGTGAGAGGGACCACTCGGCACCCCAGCAG
GTGGGGTTTGGCTCAGACCGAGCGTCTGTGTGCTCGCTATCGGTACTACT
CGTGGTCGTACTGTGCGGGGGTACGGGATGTTCGTCAGTAACACAGATTT
GCAATTTCCAAATTAGAGACTCAGCCATACAAACTGAGAAATTATTTTAC
TTGCCTTTACAGTATGAATACGTACTCTGCCGAATTGGCACGCTTACGCA
AGTATTTTTGCATTGGATTAAAGCTTTTGCAATGTACATTCCAGTAACTT
AG
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