mRNA_M-pyrifera_M_contig14034.6149.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14034.6149.1
Unique NamemRNA_M-pyrifera_M_contig14034.6149.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14034.6149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14034contigM-pyrifera_M_contig14034:2022..2648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14034.6149.1prot_M-pyrifera_M_contig14034.6149.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14034 2036..2368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.6531484-UTR-M-pyrifera_M_contig14034:2021..20351622815833.6531484-UTR-M-pyrifera_M_contig14034:2021..2035Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14034 2022..2035 +
1692277596.188263-UTR-M-pyrifera_M_contig14034:2021..20351692277596.188263-UTR-M-pyrifera_M_contig14034:2021..2035Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14034 2022..2035 +
1622815833.6777344-UTR-M-pyrifera_M_contig14034:2368..26481622815833.6777344-UTR-M-pyrifera_M_contig14034:2368..2648Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14034 2369..2648 +
1692277596.2048035-UTR-M-pyrifera_M_contig14034:2368..26481692277596.2048035-UTR-M-pyrifera_M_contig14034:2368..2648Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14034 2369..2648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.6661422-CDS-M-pyrifera_M_contig14034:2035..23681622815833.6661422-CDS-M-pyrifera_M_contig14034:2035..2368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14034 2036..2368 +
1692277596.1967762-CDS-M-pyrifera_M_contig14034:2035..23681692277596.1967762-CDS-M-pyrifera_M_contig14034:2035..2368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14034 2036..2368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14034.6149.1

>prot_M-pyrifera_M_contig14034.6149.1 ID=prot_M-pyrifera_M_contig14034.6149.1|Name=mRNA_M-pyrifera_M_contig14034.6149.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MVVLEIFRRENSMYLDASLGVCISRRCRDRRLGPSFEGIWRYPTPSLPVH
TPDSGLNKSSHQPINRQINHPTNQAIKQSTKSITNQPTNQLIIHDETRLH
APASANNARS*
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mRNA from alignment at M-pyrifera_M_contig14034:2022..2648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14034.6149.1 ID=mRNA_M-pyrifera_M_contig14034.6149.1|Name=mRNA_M-pyrifera_M_contig14034.6149.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=627bp|location=Sequence derived from alignment at M-pyrifera_M_contig14034:2022..2648+ (Macrocystis pyrifera P11B4 male)
TCACACGCGGCGAAATGGTGGTTTTGGAGATATTTCGTCGAGAAAATTCC
ATGTATTTAGACGCATCCCTCGGTGTTTGTATTTCTCGCCGTTGTCGAGA
TCGTCGGCTTGGACCTTCGTTCGAGGGGATATGGCGTTATCCAACACCGT
CATTGCCGGTACACACTCCAGACTCCGGGCTCAACAAATCAAGCCATCAA
CCAATCAATCGACAAATCAACCACCCAACAAATCAAGCAATCAAGCAATC
AACGAAATCAATCACCAACCAACCAACCAACCAACTAATCATTCATGATG
AAACGAGACTCCACGCACCAGCCTCCGCCAACAACGCCCGCTCCTGATCC
ATCTCATATCTCCCTCCCCTCGAGCGTCTTCAATTCGGGAGATCGGCCGA
AAACCCTCGACTAACCAATACCACCTACCGGTAGTTGACTTCCCGTCGGC
GGCCCTGTCGCTAAGCTTAATTTTTCACAACAACAAACAAAAATCTTGGC
ACCAGGCCAATCAACCACCTCGATTCACGCTACACAATCAACAGATAACA
TGAGAACGGCACACCGTCTACACCGCCAACGAAATACCAAAAAAAAAAGC
TCCTTCGAAGGAAAATAGAGATCACCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14034:2022..2648+

>mRNA_M-pyrifera_M_contig14034.6149.1 ID=mRNA_M-pyrifera_M_contig14034.6149.1|Name=mRNA_M-pyrifera_M_contig14034.6149.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig14034:2022..2648+ (Macrocystis pyrifera P11B4 male)
ATGGTGGTTTTGGAGATATTTCGTCGAGAAAATTCCATGTATTTAGACGC
ATCCCTCGGTGTTTGTATTTCTCGCCGTTGTCGAGATCGTCGGCTTGGAC
CTTCGTTCGAGGGGATATGGCGTTATCCAACACCGTCATTGCCGGTACAC
ACTCCAGACTCCGGGCTCAACAAATCAAGCCATCAACCAATCAATCGACA
AATCAACCACCCAACAAATCAAGCAATCAAGCAATCAACGAAATCAATCA
CCAACCAACCAACCAACCAACTAATCATTCATGATGAAACGAGACTCCAC
GCACCAGCCTCCGCCAACAACGCCCGCTCCTGAATGGTGGTTTTGGAGAT
ATTTCGTCGAGAAAATTCCATGTATTTAGACGCATCCCTCGGTGTTTGTA
TTTCTCGCCGTTGTCGAGATCGTCGGCTTGGACCTTCGTTCGAGGGGATA
TGGCGTTATCCAACACCGTCATTGCCGGTACACACTCCAGACTCCGGGCT
CAACAAATCAAGCCATCAACCAATCAATCGACAAATCAACCACCCAACAA
ATCAAGCAATCAAGCAATCAACGAAATCAATCACCAACCAACCAACCAAC
CAACTAATCATTCATGATGAAACGAGACTCCACGCACCAGCCTCCGCCAA
CAACGCCCGCTCCTGA
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