mRNA_M-pyrifera_M_contig14031.6147.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14031.6147.1
Unique NamemRNA_M-pyrifera_M_contig14031.6147.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig14031.6147.1 vs. uniprot
Match: D7FH24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH24_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.290e-20
Identity = 269/920 (29.24%), Postives = 352/920 (38.26%), Query Frame = 1 
Query:   16 SVVQQTAAAAVGALVDTDAAHALLTPLHDWLASKRRVAEAIKAEQLTADAEKAEQQRQLSE-----------EAWKSLLQEKTPRPISDTYNALAAVATAPAKLVESVGQTAEDIAATPAKVKKVAEE----------AMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGRAFADGVGVYERLVDAGKVKLAEASEAAEVLPSSRVPDLIETVADDARLLVSDLAEGTAAGVDTAGSALWGVAVEAGNSTAELLLRQALGPVHEYRTSAMRVKVALEEEQALLPSARLPLAPTGNTKGDVTATATPTPPPELPE-----------------------GTETSSMKETRGQEXXXXXXXXXXXXRRGVRGRFSAWRRRRRGPAAAV---------PAGVPVXXXXXXXXXXXXXXXXXXXTTDEGAGVGERGTSVIAASLEPKVVSSVEEAVATVRDVRKGTASTLPLPPPPLPPAADSTERGLSPAGTGKGGEEDPLAATSAMESXXXXXXXXXXXTADCRSXXXXXXXXLAPPLKDERAV---------VTSLSPAAATAGVVVEQAVAEKN---DNLVAGGVXXXXXXXXXXXXXXXXXXXATGAVMEGFGPDQKSALADEAPSRVAGVGVPRPRGDQTTA-------PPSSVIGIASPA-LADTVATAAAAAAAPDLSNSTASAXXXXXXXXXXXXXXXXASTAASAAVTTTAGDDARATV--DISAAPRSTXXEGGTTKERLSXXXXPAAVTATPAAATAAARDKVDGSGAVSAPPPXVATPAAAAVRSALGDPLVSLGDETWGDATDANVA-ENGVVVSRGSSDLSTREKKAAPKPPPSXXXXXXXXXXXXXXXXXXXXXXXADVGAADGSAGLWGVMTPAAEFLKGWVESAVPQKKKELKREEAAICWERQW 2547
            ++V QT    V  +  T AA+ALLTPLH W +S++RVAEA++A                               W +LL+   P+P+  TY  +AAV   P +L +S  Q A  ++A    +   AE           A         XXXXXXXXXXXXX     XXX                             AAE LPS R+P LIET  DDA +L  DLAEGTA G+D AG+ALW V  E G   A+ +LR  L PVHEYRTS  RV+ AL+EE+ +  +A       G  +   +A       PE                          G+            XXX           G+RGRFS+WRRR+R   A            AG                      +    A V  RG +   A LE  + +   +A              +     P+    D  + G    G G GG + P    S+ +S           + +            AP L+DE+             SL P        +EQ   E     D   AGG                    A  AV+   G  +   +A  +  R  G   P+  GD   +        P ++ G A+P+ L+ T A+ A  A            XXX   XXXXXXXX  A   + AA    A +        D+ AAP S                 P A         A +  +  GS   +  PP   + A    R   G  +    D+   DA   + + EN   V   +S L T  ++  P    +     XXXXXXXXX   XXXXXX         A  WGV  PA EFLKGWVE+AVP+KK+ELKR E A+CWERQW
Sbjct:    2 AIVSQTTEVVVATIASTGAANALLTPLHRWSSSRKRVAEAVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPWVALLRAALPQPVKKTYRTVAAV---PGQLAKSGEQAAASLSAAKDNLAAAAEVXXXAPGRARGAATQALETTRXXXXXXXXXXXXXEELVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAETLPS-RLPGLIETTTDDALVLAGDLAEGTALGLDAAGTALWEVTKELGGWAADSVLRPVLTPVHEYRTSTRRVQDALDEERVVALNAA------GKKRSLSSAEEANVGGPEXXXXXXXXXXXXXXXXXXXXXXLGEVGSAAXXXXXXXXXXXXXSDRRTPVSRLAGLRGRFSSWRRRKRSIVAVAVAFDEDGDNTAGSSQGSNATTGTREAVLDPTPTVSETVLARVESRGRAAPVAGLE--IAAGRSDAAXXXXXXXXXXEEAMATSTAPVRTVTDPPDTG----GVGVGGRQQPTLEESSTQSSVGGATAAVAPSKEAAPQSEPGAPASAPALEDEKLTRPPLAEDGGPVSLEPRPVADTGPLEQVEEEPEGGADRRAAGGGISTAIASGTLGLKPEGSATAAAAVLADDGLMRAGVVAGASAGRARGD--PKQMGDDNGSGHKAGEQDPPAIEGTATPSGLSRTSASTAVVAPXXXXXXXXXXXXXXKLAXXXXXXXXPAAGLTSDAAAEALAAEXXXXXXXXDLDAAPSSA----------------PTATAGPTPLPRARSTPRESGSDLPNTAPPQAVSGAGQEDREGRGSGVAKRNDKPRADAATGDESRENAPSVGPTASALKTSPEQQPPSKADTNPAAAXXXXXXXXXAGEXXXXXXXXXXXXXXXA--WGVQ-PAVEFLKGWVEAAVPRKKEELKRREDAVCWERQW 884
[Close]
BLAST of mRNA_M-pyrifera_M_contig14031.6147.1 vs. uniprot
Match: A0A6H5JG23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG23_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.390e-16
Identity = 104/294 (35.37%), Postives = 138/294 (46.94%), Query Frame = 1 
Query:   16 SVVQQTAAAAVGALVDTDAAHALLTPLHDWLASKRRVAEAIKAEQLTADAEKAEQQRQLSE----------EAWKSLLQEKTPRPISDTYNALAAVATAPAKLVESVGQTAEDIAATPAKVKKVAEEAMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGRAFADGVGVYERLVDAGKVKLAEASEAA---------------------EVLPSSRVPDLIETVADDARLLVSDLAEGTAAGVDTAGSALWGVAVEAGNSTAELLLRQALGPVHEYRTSAMRVKVALEEEQAL 804
            ++V QT    V  +  T AA+ALLTPLH W +S++RVAEA++A                              W + L+   P+P+  TY+ +AAV   P +L +S  Q A  ++A        A+E + XXXXXXXXXXX                  A  A  +  G  E LV A +                               E LPS R+P LIET  DDA +L  DLAEGTA G+D AG+ALW V  E G   A+ +LR  L PVHEY  SA RV+ AL++E+ +
Sbjct:  124 AIVSQTTEVVVATIASTGAANALLTPLHRWSSSRKRVAEAVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXTNPWVAHLRVVLPQPVKKTYSTVAAV---PGQLAKSGEQAAASLSA--------AKENLAXXXXXXXXXXXRARGATMQALETART---AREAITEVPGRVEELVKATQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETLPS-RLPSLIETTTDDALVLAGDLAEGTALGLDAAGTALWEVTKELGGWAADFVLRPVLTPVHEYHMSARRVQDALDDERVV 402
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14031.6147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH24_ECTSI3.290e-2029.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG23_9PHAE6.390e-1635.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14031contigM-pyrifera_M_contig14031:1920..8107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size2550
Cds size2550
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14031.6147.1prot_M-pyrifera_M_contig14031.6147.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14031 1920..8107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.4184804-CDS-M-pyrifera_M_contig14031:1919..24191622815833.4184804-CDS-M-pyrifera_M_contig14031:1919..2419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14031 1920..2419 +
1692277596.0303488-CDS-M-pyrifera_M_contig14031:1919..24191692277596.0303488-CDS-M-pyrifera_M_contig14031:1919..2419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14031 1920..2419 +
1622815833.4305553-CDS-M-pyrifera_M_contig14031:2461..25301622815833.4305553-CDS-M-pyrifera_M_contig14031:2461..2530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14031 2462..2530 +
1692277596.0413187-CDS-M-pyrifera_M_contig14031:2461..25301692277596.0413187-CDS-M-pyrifera_M_contig14031:2461..2530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14031 2462..2530 +
1622815833.44316-CDS-M-pyrifera_M_contig14031:3571..38401622815833.44316-CDS-M-pyrifera_M_contig14031:3571..3840Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14031 3572..3840 +
1692277596.053949-CDS-M-pyrifera_M_contig14031:3571..38401692277596.053949-CDS-M-pyrifera_M_contig14031:3571..3840Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14031 3572..3840 +
1622815833.4584064-CDS-M-pyrifera_M_contig14031:5996..65051622815833.4584064-CDS-M-pyrifera_M_contig14031:5996..6505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14031 5997..6505 +
1692277596.0630069-CDS-M-pyrifera_M_contig14031:5996..65051692277596.0630069-CDS-M-pyrifera_M_contig14031:5996..6505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14031 5997..6505 +
1622815833.4713974-CDS-M-pyrifera_M_contig14031:6709..71391622815833.4713974-CDS-M-pyrifera_M_contig14031:6709..7139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14031 6710..7139 +
1692277596.079707-CDS-M-pyrifera_M_contig14031:6709..71391692277596.079707-CDS-M-pyrifera_M_contig14031:6709..7139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14031 6710..7139 +
1622815833.4859054-CDS-M-pyrifera_M_contig14031:7334..81071622815833.4859054-CDS-M-pyrifera_M_contig14031:7334..8107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14031 7335..8107 +
1692277596.091165-CDS-M-pyrifera_M_contig14031:7334..81071692277596.091165-CDS-M-pyrifera_M_contig14031:7334..8107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14031 7335..8107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14031.6147.1

>prot_M-pyrifera_M_contig14031.6147.1 ID=prot_M-pyrifera_M_contig14031.6147.1|Name=mRNA_M-pyrifera_M_contig14031.6147.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=850bp
MISFTSVVQQTAAAAVGALVDTDAAHALLTPLHDWLASKRRVAEAIKAEQ
LTADAEKAEQQRQLSEEAWKSLLQEKTPRPISDTYNALAAVATAPAKLVE
SVGQTAEDIAATPAKVKKVAEEAMVAGIATVEALASLPRRAQEAAEAAEE
LSERAGRAFADGVGVYERLVDAGKVKLAEASEAAEVLPSSRVPDLIETVA
DDARLLVSDLAEGTAAGVDTAGSALWGVAVEAGNSTAELLLRQALGPVHE
YRTSAMRVKVALEEEQALLPSARLPLAPTGNTKGDVTATATPTPPPELPE
GTETSSMKETRGQEEKEEEEEEEASSRRGVRGRFSAWRRRRRGPAAAVPA
GVPVAAAPAPTAAAAALEEAAAVTTDEGAGVGERGTSVIAASLEPKVVSS
VEEAVATVRDVRKGTASTLPLPPPPLPPAADSTERGLSPAGTGKGGEEDP
LAATSAMESSSSSSTESRSETADCRSEGGGGGAGLAPPLKDERAVVTSLS
PAAATAGVVVEQAVAEKNDNLVAGGVGGVGGVGAGADAVDAVDAGATGAV
MEGFGPDQKSALADEAPSRVAGVGVPRPRGDQTTAPPSSVIGIASPALAD
TVATAAAAAAAPDLSNSTASATTASATTAPATTAPATASTAASAAVTTTA
GDDARATVDISAAPRSTAAEGGTTKERLSVTAAPAAVTATPAAATAAARD
KVDGSGAVSAPPPPVATPAAAAVRSALGDPLVSLGDETWGDATDANVAEN
GVVVSRGSSDLSTREKKAAPKPPPSAPSEAPERPSGKSRNASTAATAAAD
VGAADGSAGLWGVMTPAAEFLKGWVESAVPQKKKELKREEAAICWERQW*
back to top

mRNA from alignment at M-pyrifera_M_contig14031:1920..8107+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14031.6147.1 ID=mRNA_M-pyrifera_M_contig14031.6147.1|Name=mRNA_M-pyrifera_M_contig14031.6147.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6188bp|location=Sequence derived from alignment at M-pyrifera_M_contig14031:1920..8107+ (Macrocystis pyrifera P11B4 male)
ATGATCTCGTTCACATCCGTCGTGCAGCAGACCGCAGCGGCGGCGGTGGG
AGCCCTCGTCGACACAGACGCAGCCCACGCCCTCCTGACACCCCTGCACG
ACTGGCTGGCCTCAAAGCGCCGGGTAGCTGAGGCCATAAAAGCAGAGCAG
CTCACCGCGGATGCGGAGAAAGCGGAGCAGCAAAGGCAACTCTCCGAAGA
AGCCTGGAAATCCCTCTTGCAGGAGAAAACTCCCAGACCTATCAGCGACA
CCTACAACGCGCTTGCTGCCGTCGCGACAGCCCCGGCGAAGCTGGTCGAG
AGCGTCGGGCAGACAGCAGAAGACATCGCCGCGACCCCAGCGAAAGTCAA
GAAGGTTGCAGAGGAGGCAATGGTCGCCGGGATCGCAACCGTGGAAGCCC
TTGCGTCGTTGCCTCGCCGCGCGCAGGAGGCGGCGGAGGCGGCCGAAGAG
CTGTCGGAGAGGGCAGGGCGAGCCTTTGCAGACGGGGTCGGGGTGTACGA
GTGGTGGCGGGCCAGGGCGGAGGCGCTGCCGTCTGAGTCAAGGCGACTGG
TGGATGCTGGGAAGGTGAAGCTGGCGGAGGCGTCGGAAGCGGCAGAGGTG
CTTCCGAGCAGGTCCGTATTGGTCCATGTCCATATTTCGTACCAGGTACA
TAATAGTATGAAATATGGGACGGGACCGGACCGCGGGACCTTTTCGACGA
CGGTTTTACCGTCCCATCCCGTCTCTACCGTCCTTCCTGTCCCGTAAAGA
AATGAGCAGGTGCATATCTCCCCGTATCGTAGCTACTGTTTGAATATGGG
ATATGGAACTGTTTGAAATATGGGATGGGACGGAACCGCGGTACCATTTT
GACGACGGCTTTACCGTCCCGTTCCGTCAGTACCGTCAATCACATCCGGT
CAAGAAAGCGTTCGCGCAAAGCGTTGGAAATATTCTTGCGCAATGGCGAG
GAGGGTGGCGCTGATATTTCTTCACCGGTAAACGAGATGCGCGAGGAAAG
GCGAAGTACAATGCAGCAGTGCAACAAAATGCCGAAAGCAAGATGCAAGA
ATAATATCACTGCAAAAGGCACAAATGCAGAATGCAAAATGCAAGGTCAG
ATTCTCAAGTTGAAGCGCTCATGGGGGCCTAGTCTATGCCGCATGGTACA
TACAATACATGCCAGGTACATACCTGGTACGTACGAGTACCAATTTTTAT
GTTCGGCATTTGGTCCCGCTGAAGTGTCCCTCTGAAGTCCCACGTGGTAC
GGGGAGTTCTGCAACTGTCTCCTAAACCAACACTCCTTCTGGAACAAACG
TGCCGGAGTTTAACACTCCCCTCCGCACGACTTACCCCCTTACAGGCGGT
TCTTCGTAGGATGCAGCTCAACCTTAATGCGACTCGTCCAACACCTCCGA
CGCTTCACGCTTGGTGCAATCAGTGTCTGCCTGATGGTTGAAAACCCGAC
GTGCTCAGTCCCGGCATTGTACATAGGGATCCGACGTGCTCAGTCCCAGC
ATTGTACATAGGGATGCGAGGGTCTATGGTAATAGGACTACGGCTATGTA
TGACGTGAGCACCCCACCTCATACGACCGCGGTCATGCATGTCATGAGTA
CCCCCCCCCCCTTCCAATTTCCCCCCGTTGAAAACCCGTAATCGGGAAAA
AGCAGGGTGCCGGATCTGATCGAAACCGTCGCTGATGACGCGCGGTTGCT
CGTGAGCGACTTAGCCGAGGGGACGGCGGCTGGGGTGGACACGGCCGGGT
CGGCGCTGTGGGGGGTGGCGGTCGAGGCCGGGAACTCGACTGCAGAGCTT
CTTTTGCGACAAGCGTTAGGTCCTGTGCACGAGTACCGGACATCGGCCAT
GCGGGTAAAAGTGGCGTTGGAAGAGGAGCAGGCGTTGCTTCCCTCGGCCC
GGCTCCCCCTCGCACCTACAGGTGAGACATGAGAAACTTGAAAAAAAAAA
AAAAATCATGCATTTTTGTTTTGTATATATACAACGCACATCTTGGACAG
ATCATCGATTCCTCACTTCATGATCAAAATCGTGCAGGGCAGATATATCT
ATAGATAGACAGGTCCCTGATCTGCATGATCTGCATGATCTGTATGATAC
AGCTCATGTTCCCTGGTGGGAATCGTATAACCTGCATTCTCTACTGATAG
GACATGTTTTCCTGGGCCGGATCTGTGCTTTACAAATCCTGCCCAGCACC
TCAGAGCGGCAGGTTTGATGATGTGGATGATTTATCCGTAGATAATTTAT
CTGTAGATGATCTTTCTATAGATAATCTATCTGTTCTTAGATCGTGGTCT
GTCCGGCGTGTGTAAACGTTGAAAACCACAAATAAAAAAAACGAGAACGC
AGTGCTGCTTGTTAGAGAATGAGTCAAATCACATACGTAATATTTTGAAC
GAAGGGGTATTTGGAGTTTGTATTAGAGCTAAATTGAATCTTAATTTCTT
GGTGTCTTGATTGGGATAGGGGAAAGGGGATGTTTTTGTTGGATAGAGCG
AGCATGTAGTTGAGGTTGAGCCGAGCAAAGAAACAAGGAGCACGACGGGT
GTTCGTTCGACAAGCGAAGCAGACAGAGCGCAGAAAGCTGGTTCGGTACC
CGACTTCCATTTAGGCAGAATCTACTGCGGATGTGAGGATTGAAAGCTGC
AGGGAAGAGGACTTGGCTGGAGTTTTCGTGAACATTTTTTTTTGGATGAA
CACCACAAGCAGTGCATACCTATCTCTTTAGAATGAAGAATCGGCACGGA
CACTGGGTGTGCTGGATGTCGACGGGTACATAGAAAGAGCGGTTTAGTAT
GAAGAACACGCACACACCTGAGACACGTGCACAGACACTGCCGCCGCTTG
TTTCTTGGTGCTGCCGTCACAACGTGCCCGTGTGGCTGTGGCACTTGGGG
GGCACATTGTCTGGATGTGCTGTAGGTCAGCGTATCCCGTGAACAGGTCT
TTCGGTGGTGCGATGCGATTCTCTTGATAGCGGGGCGGGGTTAGGCGCGG
CGGGTTGGTAGATGGTAGGTGAGGACAGCAGTGAGGTGCCGATTTCTTGG
GGGGTCGAGTCCGCCGGTAGCCCTTCGTCTGGCGCCCCCCGCCTCCCGGT
TACCCTCTCCAACTTATCTCAAGTGGGCTGGCACACCACACCGCACCAAA
CCACACCACACCAAACCACACACCACACGCACCCGCGCGATATCCCGCAC
GATACCAATCATACCGCGTGCACGCTCAAGCCCGTGCTGGAAGTGGCGTG
ATATCCCAAACGATACTAGTCATGCCGCGCGTGCCCCCCCATCCCCCATG
CCGGCAGTGGCGTGATATCCCGAACGGTGTCAACTACGCCATGCGTGCCC
CCATGCCCGAAGTGGCGCAATATTCAAACGGGTACCAGTCATGCCGCGCG
TGCCCCCATGCGGGAAGTTGCGCGACATCCCAAACGATAGCGATCATGCC
GCGCGTACGAACCCCCATGCCTGAAGTGCTTCGGGCGCGTATATGTTACA
CAAAAGCTACGTAGGAGACTGCGGTTTGAACCCCTCTTTTCTCACCGCCT
CTCTACATTAAAACTAGTGTAATGAGGCCTAAAGAGGCGTTCACGTGCCC
AAAAAGCCAAATCTCATCAAGCGGGGGAATTCAATAGTCAGAACTAAATA
TGGTGTGTAATCATGCGGGCATATACTTTATACTATACAACGGTATGGTT
TTGGGTCCATCGTGGGTTCTGGTTATTACGGGGGACTATAATAAATAGGA
CCGTATATTGTTAGTAAAAGTAGGTAAATATATAGGTTTTGGTGTGTACC
ATAGGTCCTGTTTACTATGGTCCCCCGTAATATTAATGGTTTGTATTGCT
ATGGCCCCTAGTAATACGAAGCATGTTTGCGTACATACTTGTTCGTGGCG
AGCGCGCGCGGGGGATGGGGGGGTCTTCTCTACGTGGCCGCGGGAGCCGA
CTGGCGGGCGACGGACGACCGGCCCCTTGGCCCTTCCTTCTTCCCTCCGC
TCCCTTTCACGTTCTCTCTTCTGGTGCTTGGCACCTCTCCCCTCCTTTTT
TTGTGCCTCGCCGGTGTGTACTGGCAGGGAACACCAAGGGCGATGTAACC
GCCACCGCAACCCCGACACCGCCGCCAGAGCTACCCGAGGGGACAGAAAC
GTCTTCGATGAAGGAGACCAGAGGGCAGGAGGAGAAGGAGGAAGAAGAGG
AGGAGGAGGCGTCGTCGAGGCGCGGGGTACGCGGGAGGTTTTCCGCCTGG
CGTCGGAGAAGGAGGGGACCGGCAGCCGCGGTCCCAGCAGGCGTGCCAGT
CGCAGCAGCACCAGCGCCAACAGCAGCAGCAGCAGCACTAGAAGAAGCAG
CGGCAGTCACCACGGACGAAGGTGCTGGCGTCGGCGAGAGAGGTACGAGC
GTGATCGCCGCGAGCCTCGAGCCGAAGGTGGTGTCGTCGGTCGAGGAGGC
GGTGGCAACTGTGCGCGATGTGCGGAAAGGTACTGCTTCAACCTTGCCGC
TGCCCCCGCCGCCACTGCCTCCGGCTGCGGACAGCACAGAAAGAGGGTTG
AGTCCTGCAGGGACGGGAAAGGGCGGAGAAGAAGACGTGGGGGTGAAAGC
AGCGACGGGCGTGGGGAAAACCTCGGGTGGCGTTAGTGTCAAGGCCATTG
GCGGGAAGGGCCCCGTCGGAGGAGACCTGCAGGCTAGAGCTGTGGCTGCG
TCGCCGGCCGATGGGGATGCCGATGGAACCGATAGGGCCGCAGTCGACGC
TGCTTTCCAAAGCGTGGCGCTTTCTCCTGCCTCGTCCGAGCCGCTCGCCG
CGACATCAGCGATGGAATCGTCATCGTCGTCGTCGACTGAAAGCAGGTCG
GAGACGGCGGATTGTAGGTCGGAGGGAGGGGGCGGCGGCGCAGGGCTTGC
TCCACCGCTCAAGGATGAGCGGGCGGTGGTCACTTCGCTGTCCCCGGCAG
CAGCAACAGCCGGCGTCGTCGTCGAGCAGGCTGTCGCGGAAAAAAACGAC
AATCTTGTCGCTGGTGGTGTTGGTGGTGTTGGTGGTGTTGGTGCTGGTGC
TGATGCTGTTGATGCTGTTGATGCTGGTGCTACAGGGGCCGTTATGGAAG
GCTTCGGGCCTGATCAGAAGAGCGCGCTGGCAGATGAGGCTCCATCGCGC
GTAGCAGGGGTAGGGGTTCCCCGCCCACGAGGGGACCAGACGACAGCACC
TCCGTCCTCAGTCATCGGCAGTGCTATACTCGATAAAACCAACGCCGATG
TTTTGGCGGACGACGACGCGCAAGCCAGCGCAGACAAAGTGAGCGGTGCT
GGTGACGACAGCGCTGGTGACCGCGGCAGCAGGAGCGATGCGCAGAAGGG
ACATACGGCGGCGGTGGCATCCGTCGAGGTCCCTGAAGAAGTGGGATCGG
TCCCAGCTGTCTCAGTCGCTTCTCCTGCCTTGGCCGATACGGTGGCGACG
GCGGCGGCGGCGGCGGCGGCTCCTGATCTTAGTAACAGCACCGCCTCAGC
TACTACTGCTTCAGCTACTACCGCGCCAGCTACTACGGCACCAGCTACCG
CCTCCACCGCTGCTTCCGCCGCCGTTACGACTACCGCGGGAGATGATGCG
CGAGCAACAGTCGACATCTCTGCCGCGCCCCGTTCTACCGCTGCAGAGGG
AGGCACGACCAAGGAACGATTGTCGGTGACAGCGGCGCCGGCGGCGGTGA
CAGCGACTCCGGCGGCAGCAACGGCAGCGGCTAGAGACAAGGTGGACGGT
TCGGGCGCGGTCTCCGCACCACCCCCGCCCGTGGCCACGCCCGCTGCCGC
GGCTGTTCGCAGCGCACTCGGTGACCCTCTCGTGTCGCTGGGGGACGAGA
CGTGGGGTGATGCTACGGACGCTAACGTTGCGGAGAACGGTGTGGTTGTC
TCCAGAGGCAGCTCGGATCTGTCGACACGAGAGAAAAAAGCGGCCCCGAA
ACCGCCGCCGTCCGCGCCGTCGGAAGCTCCGGAGAGGCCCTCGGGAAAGA
GCCGTAACGCGTCCACCGCTGCGACCGCCGCTGCCGATGTCGGCGCCGCG
GACGGTTCTGCCGGCTTGTGGGGCGTGATGACCCCGGCGGCGGAGTTCCT
GAAAGGGTGGGTGGAGAGCGCGGTGCCGCAGAAGAAGAAGGAGCTCAAGC
GGGAGGAGGCGGCCATTTGTTGGGAGCGGCAGTGGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig14031:1920..8107+

>mRNA_M-pyrifera_M_contig14031.6147.1 ID=mRNA_M-pyrifera_M_contig14031.6147.1|Name=mRNA_M-pyrifera_M_contig14031.6147.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=5100bp|location=Sequence derived from alignment at M-pyrifera_M_contig14031:1920..8107+ (Macrocystis pyrifera P11B4 male)
ATGATCTCGTTCACATCCGTCGTGCAGCAGACCGCAGCGGCGGCGGTGGG
AGCCCTCGTCGACACAGACGCAGCCCACGCCCTCCTGACACCCCTGCACG
ACTGGCTGGCCTCAAAGCGCCGGGTAGCTGAGGCCATAAAAGCAGAGCAG
CTCACCGCGGATGCGGAGAAAGCGGAGCAGCAAAGGCAACTCTCCGAAGA
AGCCTGGAAATCCCTCTTGCAGGAGAAAACTCCCAGACCTATCAGCGACA
CCTACAACGCGCTTGCTGCCGTCGCGACAGCCCCGGCGAAGCTGGTCGAG
AGCGTCGGGCAGACAGCAGAAGACATCGCCGCGACCCCAGCGAAAGTCAA
GAAGGTTGCAGAGGAGGCAATGGTCGCCGGGATCGCAACCGTGGAAGCCC
TTGCGTCGTTGCCTCGCCGCGCGCAGGAGGCGGCGGAGGCGGCCGAAGAG
CTGTCGGAGAGGGCAGGGCGAGCCTTTGCAGACGGGGTCGGGGTGTACGA
ATGATCTCGTTCACATCCGTCGTGCAGCAGACCGCAGCGGCGGCGGTGGG
AGCCCTCGTCGACACAGACGCAGCCCACGCCCTCCTGACACCCCTGCACG
ACTGGCTGGCCTCAAAGCGCCGGGTAGCTGAGGCCATAAAAGCAGAGCAG
CTCACCGCGGATGCGGAGAAAGCGGAGCAGCAAAGGCAACTCTCCGAAGA
AGCCTGGAAATCCCTCTTGCAGGAGAAAACTCCCAGACCTATCAGCGACA
CCTACAACGCGCTTGCTGCCGTCGCGACAGCCCCGGCGAAGCTGGTCGAG
AGCGTCGGGCAGACAGCAGAAGACATCGCCGCGACCCCAGCGAAAGTCAA
GAAGGTTGCAGAGGAGGCAATGGTCGCCGGGATCGCAACCGTGGAAGCCC
TTGCGTCGTTGCCTCGCCGCGCGCAGGAGGCGGCGGAGGCGGCCGAAGAG
CTGTCGGAGAGGGCAGGGCGAGCCTTTGCAGACGGGGTCGGGGTGTACGA
GCGACTGGTGGATGCTGGGAAGGTGAAGCTGGCGGAGGCGTCGGAAGCGG
CAGAGGTGCTTCCGAGCAGGCGACTGGTGGATGCTGGGAAGGTGAAGCTG
GCGGAGGCGTCGGAAGCGGCAGAGGTGCTTCCGAGCAGCAGGGTGCCGGA
TCTGATCGAAACCGTCGCTGATGACGCGCGGTTGCTCGTGAGCGACTTAG
CCGAGGGGACGGCGGCTGGGGTGGACACGGCCGGGTCGGCGCTGTGGGGG
GTGGCGGTCGAGGCCGGGAACTCGACTGCAGAGCTTCTTTTGCGACAAGC
GTTAGGTCCTGTGCACGAGTACCGGACATCGGCCATGCGGGTAAAAGTGG
CGTTGGAAGAGGAGCAGGCGTTGCTTCCCTCGGCCCGGCTCCCCCTCGCA
CCTACAGCAGGGTGCCGGATCTGATCGAAACCGTCGCTGATGACGCGCGG
TTGCTCGTGAGCGACTTAGCCGAGGGGACGGCGGCTGGGGTGGACACGGC
CGGGTCGGCGCTGTGGGGGGTGGCGGTCGAGGCCGGGAACTCGACTGCAG
AGCTTCTTTTGCGACAAGCGTTAGGTCCTGTGCACGAGTACCGGACATCG
GCCATGCGGGTAAAAGTGGCGTTGGAAGAGGAGCAGGCGTTGCTTCCCTC
GGCCCGGCTCCCCCTCGCACCTACAGGGAACACCAAGGGCGATGTAACCG
CCACCGCAACCCCGACACCGCCGCCAGAGCTACCCGAGGGGACAGAAACG
TCTTCGATGAAGGAGACCAGAGGGCAGGAGGAGAAGGAGGAAGAAGAGGA
GGAGGAGGCGTCGTCGAGGCGCGGGGTACGCGGGAGGTTTTCCGCCTGGC
GTCGGAGAAGGAGGGGACCGGCAGCCGCGGTCCCAGCAGGCGTGCCAGTC
GCAGCAGCACCAGCGCCAACAGCAGCAGCAGCAGCACTAGAAGAAGCAGC
GGCAGTCACCACGGACGAAGGTGCTGGCGTCGGCGAGAGAGGTACGAGCG
TGATCGCCGCGAGCCTCGAGCCGAAGGTGGTGTCGTCGGTCGAGGAGGCG
GTGGCAACTGTGCGCGATGTGCGGAAAGGTACTGCTTCAACCTTGCCGCT
GCCCCCGCCGCCACTGCCTCCGGCTGCGGACAGCACAGAAAGAGGGTTGA
GTCCTGCAGGGACGGGAAAGGGCGGAGAAGAAGACGGAACACCAAGGGCG
ATGTAACCGCCACCGCAACCCCGACACCGCCGCCAGAGCTACCCGAGGGG
ACAGAAACGTCTTCGATGAAGGAGACCAGAGGGCAGGAGGAGAAGGAGGA
AGAAGAGGAGGAGGAGGCGTCGTCGAGGCGCGGGGTACGCGGGAGGTTTT
CCGCCTGGCGTCGGAGAAGGAGGGGACCGGCAGCCGCGGTCCCAGCAGGC
GTGCCAGTCGCAGCAGCACCAGCGCCAACAGCAGCAGCAGCAGCACTAGA
AGAAGCAGCGGCAGTCACCACGGACGAAGGTGCTGGCGTCGGCGAGAGAG
GTACGAGCGTGATCGCCGCGAGCCTCGAGCCGAAGGTGGTGTCGTCGGTC
GAGGAGGCGGTGGCAACTGTGCGCGATGTGCGGAAAGGTACTGCTTCAAC
CTTGCCGCTGCCCCCGCCGCCACTGCCTCCGGCTGCGGACAGCACAGAAA
GAGGGTTGAGTCCTGCAGGGACGGGAAAGGGCGGAGAAGAAGACCCGCTC
GCCGCGACATCAGCGATGGAATCGTCATCGTCGTCGTCGACTGAAAGCAG
GTCGGAGACGGCGGATTGTAGGTCGGAGGGAGGGGGCGGCGGCGCAGGGC
TTGCTCCACCGCTCAAGGATGAGCGGGCGGTGGTCACTTCGCTGTCCCCG
GCAGCAGCAACAGCCGGCGTCGTCGTCGAGCAGGCTGTCGCGGAAAAAAA
CGACAATCTTGTCGCTGGTGGTGTTGGTGGTGTTGGTGGTGTTGGTGCTG
GTGCTGATGCTGTTGATGCTGTTGATGCTGGTGCTACAGGGGCCGTTATG
GAAGGCTTCGGGCCTGATCAGAAGAGCGCGCTGGCAGATGAGGCTCCATC
GCGCGTAGCAGGGGTAGGGGTTCCCCGCCCACGAGGGGACCAGACGACAG
CACCTCCGTCCTCAGTCATCGGCACCGCTCGCCGCGACATCAGCGATGGA
ATCGTCATCGTCGTCGTCGACTGAAAGCAGGTCGGAGACGGCGGATTGTA
GGTCGGAGGGAGGGGGCGGCGGCGCAGGGCTTGCTCCACCGCTCAAGGAT
GAGCGGGCGGTGGTCACTTCGCTGTCCCCGGCAGCAGCAACAGCCGGCGT
CGTCGTCGAGCAGGCTGTCGCGGAAAAAAACGACAATCTTGTCGCTGGTG
GTGTTGGTGGTGTTGGTGGTGTTGGTGCTGGTGCTGATGCTGTTGATGCT
GTTGATGCTGGTGCTACAGGGGCCGTTATGGAAGGCTTCGGGCCTGATCA
GAAGAGCGCGCTGGCAGATGAGGCTCCATCGCGCGTAGCAGGGGTAGGGG
TTCCCCGCCCACGAGGGGACCAGACGACAGCACCTCCGTCCTCAGTCATC
GGCATCGCTTCTCCTGCCTTGGCCGATACGGTGGCGACGGCGGCGGCGGC
GGCGGCGGCTCCTGATCTTAGTAACAGCACCGCCTCAGCTACTACTGCTT
CAGCTACTACCGCGCCAGCTACTACGGCACCAGCTACCGCCTCCACCGCT
GCTTCCGCCGCCGTTACGACTACCGCGGGAGATGATGCGCGAGCAACAGT
CGACATCTCTGCCGCGCCCCGTTCTACCGCTGCAGAGGGAGGCACGACCA
AGGAACGATTGTCGGTGACAGCGGCGCCGGCGGCGGTGACAGCGACTCCG
GCGGCAGCAACGGCAGCGGCTAGAGACAAGGTGGACGGTTCGGGCGCGGT
CTCCGCACCACCCCCGCCCGTGGCCACGCCCGCTGCCGCGGCTGTTCGCA
GCGCACTCGGTGACCCTCTCGTGTCGCTGGGGGACGAGACGTGGGGTGAT
GCTACGGACGCTAACGTTGCGGAGAACGGTGTGGTTGTCTCCAGAGGCAG
CTCGGATCTGTCGACACGAGAGAAAAAAGCGGCCCCGAAACCGCCGCCGT
CCGCGCCGTCGGAAGCTCCGGAGAGGCCCTCGGGAAAGAGCCGTAACGCG
TCCACCGCTGCGACCGCCGCTGCCGATGTCGGCGCCGCGGACGGTTCTGC
CGGCTTGTGGGGCGTGATGACCCCGGCGGCGGAGTTCCTGAAAGGGTGGG
TGGAGAGCGCGGTGCCGCAGAAGAAGAAGGAGCTCAAGCGGGAGGAGGCG
GCCATTTGTTGGGAGCGGCAGTGGTAATCGCTTCTCCTGCCTTGGCCGAT
ACGGTGGCGACGGCGGCGGCGGCGGCGGCGGCTCCTGATCTTAGTAACAG
CACCGCCTCAGCTACTACTGCTTCAGCTACTACCGCGCCAGCTACTACGG
CACCAGCTACCGCCTCCACCGCTGCTTCCGCCGCCGTTACGACTACCGCG
GGAGATGATGCGCGAGCAACAGTCGACATCTCTGCCGCGCCCCGTTCTAC
CGCTGCAGAGGGAGGCACGACCAAGGAACGATTGTCGGTGACAGCGGCGC
CGGCGGCGGTGACAGCGACTCCGGCGGCAGCAACGGCAGCGGCTAGAGAC
AAGGTGGACGGTTCGGGCGCGGTCTCCGCACCACCCCCGCCCGTGGCCAC
GCCCGCTGCCGCGGCTGTTCGCAGCGCACTCGGTGACCCTCTCGTGTCGC
TGGGGGACGAGACGTGGGGTGATGCTACGGACGCTAACGTTGCGGAGAAC
GGTGTGGTTGTCTCCAGAGGCAGCTCGGATCTGTCGACACGAGAGAAAAA
AGCGGCCCCGAAACCGCCGCCGTCCGCGCCGTCGGAAGCTCCGGAGAGGC
CCTCGGGAAAGAGCCGTAACGCGTCCACCGCTGCGACCGCCGCTGCCGAT
GTCGGCGCCGCGGACGGTTCTGCCGGCTTGTGGGGCGTGATGACCCCGGC
GGCGGAGTTCCTGAAAGGGTGGGTGGAGAGCGCGGTGCCGCAGAAGAAGA
AGGAGCTCAAGCGGGAGGAGGCGGCCATTTGTTGGGAGCGGCAGTGGTAA
back to top