mRNA_M-pyrifera_M_contig1403.6146.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1403.6146.1
Unique NamemRNA_M-pyrifera_M_contig1403.6146.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig1403.6146.1 vs. uniprot
Match: A0A835YSG5_9STRA (U2 snRNP protein Rds3p n=2 Tax=Eukaryota TaxID=2759 RepID=A0A835YSG5_9STRA)

HSP 1 Score: 241 bits (614), Expect = 2.990e-78
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 1 
Query:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 330
            MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRC ICGG GISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFK+R
Sbjct:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRCVICGGVGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKQR 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig1403.6146.1 vs. uniprot
Match: A0A7S0HIU9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HIU9_9EUKA)

HSP 1 Score: 241 bits (615), Expect = 5.880e-78
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 1 
Query:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 330
            MAKHHPDL+MCRKQPGIA+GRLCEKCDGKC +CDSYVRPCTLVRICDECNYGSYEGRC ICGGPGISDAYYC+ECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:   32 MAKHHPDLIMCRKQPGIAVGRLCEKCDGKCPICDSYVRPCTLVRICDECNYGSYEGRCVICGGPGISDAYYCKECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig1403.6146.1 vs. uniprot
Match: A0A022QQC9_ERYGU (Uncharacterized protein n=5 Tax=Eukaryota TaxID=2759 RepID=A0A022QQC9_ERYGU)

HSP 1 Score: 239 bits (611), Expect = 8.540e-78
Identity = 102/110 (92.73%), Postives = 109/110 (99.09%), Query Frame = 1 
Query:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 330
            MAKHHPDL+MCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGS++GRC ICGGPGISDAYYC+ECTQQEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGPGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig1403.6146.1 vs. uniprot
Match: B3S8G1_TRIAD (Uncharacterized protein n=44 Tax=Eumetazoa TaxID=6072 RepID=B3S8G1_TRIAD)

HSP 1 Score: 239 bits (610), Expect = 1.210e-77
Identity = 103/110 (93.64%), Postives = 108/110 (98.18%), Query Frame = 1 
Query:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 330
            MAKHHPDL+MCRKQPG+AIGRLCEKCDGKCV+CDSYVRPCTLVRICDECNYGSY+GRC ICGGPGISDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIMCRKQPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGISDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig1403.6146.1 vs. uniprot
Match: A7SWK0_NEMVE (Predicted protein n=5 Tax=Eumetazoa TaxID=6072 RepID=A7SWK0_NEMVE)

HSP 1 Score: 239 bits (610), Expect = 1.210e-77
Identity = 102/110 (92.73%), Postives = 108/110 (98.18%), Query Frame = 1 
Query:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 330
            MAKHHPDL+MCRKQPG+AIGRLCEKCDGKCV+CDSYVRPCTLVRICDECNYGSY+GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIMCRKQPGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTVQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig1403.6146.1 vs. uniprot
Match: A0A7S2RJG3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJG3_9STRA)

HSP 1 Score: 239 bits (610), Expect = 1.210e-77
Identity = 105/110 (95.45%), Postives = 107/110 (97.27%), Query Frame = 1 
Query:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 330
            MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCV+CDSYVRP TLVRICDECNYGSYEGRC ICGGPGISDAYYCREC QQEKDRDGCPKI+NLGSSKTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPATLVRICDECNYGSYEGRCVICGGPGISDAYYCRECCQQEKDRDGCPKIINLGSSKTDLFYERKKYGFKKR 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig1403.6146.1 vs. uniprot
Match: M4E1W9_BRARP (Uncharacterized protein n=15 Tax=Eukaryota TaxID=2759 RepID=M4E1W9_BRARP)

HSP 1 Score: 239 bits (609), Expect = 3.920e-77
Identity = 104/110 (94.55%), Postives = 109/110 (99.09%), Query Frame = 1 
Query:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 330
            MAKHHPDL+MCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGS++GRCTICGG GISDAYYC+ECTQQEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:   26 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFQGRCTICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 135
[Close]
BLAST of mRNA_M-pyrifera_M_contig1403.6146.1 vs. uniprot
Match: A0A6A4WXY4_AMPAM (PHD finger-like domain-containing protein 5A n=7 Tax=Opisthokonta TaxID=33154 RepID=A0A6A4WXY4_AMPAM)

HSP 1 Score: 237 bits (605), Expect = 6.960e-77
Identity = 103/110 (93.64%), Postives = 107/110 (97.27%), Query Frame = 1 
Query:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 330
            MAKHHPDL+ CRKQPG+AIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSY+GRC ICGGPGISDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIFCRKQPGVAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYQGRCVICGGPGISDAYYCQECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig1403.6146.1 vs. uniprot
Match: A0A7S2HSQ3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HSQ3_9STRA)

HSP 1 Score: 237 bits (605), Expect = 6.960e-77
Identity = 105/110 (95.45%), Postives = 107/110 (97.27%), Query Frame = 1 
Query:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 330
            MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCV+CDSYVRP  LVRICDECNYGSYEGRC ICGGPGISDAY+CRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPNVLVRICDECNYGSYEGRCVICGGPGISDAYFCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig1403.6146.1 vs. uniprot
Match: M4DYK5_BRARP (Uncharacterized protein n=11 Tax=Brassicaceae TaxID=3700 RepID=M4DYK5_BRARP)

HSP 1 Score: 237 bits (604), Expect = 9.880e-77
Identity = 103/110 (93.64%), Postives = 108/110 (98.18%), Query Frame = 1 
Query:    1 MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 330
            MAKHHPDL+MCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGS++GRC ICGG GISDAYYC+ECTQQEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1403.6146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSG5_9STRA2.990e-7897.27U2 snRNP protein Rds3p n=2 Tax=Eukaryota TaxID=275... [more]
A0A7S0HIU9_9EUKA5.880e-7894.55Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A022QQC9_ERYGU8.540e-7892.73Uncharacterized protein n=5 Tax=Eukaryota TaxID=27... [more]
B3S8G1_TRIAD1.210e-7793.64Uncharacterized protein n=44 Tax=Eumetazoa TaxID=6... [more]
A7SWK0_NEMVE1.210e-7792.73Predicted protein n=5 Tax=Eumetazoa TaxID=6072 Rep... [more]
A0A7S2RJG3_9STRA1.210e-7795.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
M4E1W9_BRARP3.920e-7794.55Uncharacterized protein n=15 Tax=Eukaryota TaxID=2... [more]
A0A6A4WXY4_AMPAM6.960e-7793.64PHD finger-like domain-containing protein 5A n=7 T... [more]
A0A7S2HSQ3_9STRA6.960e-7795.45Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
M4DYK5_BRARP9.880e-7793.64Uncharacterized protein n=11 Tax=Brassicaceae TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1403contigM-pyrifera_M_contig1403:14365..19089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.8
Seed ortholog evalue3.7e-62
Seed eggNOG ortholog2880.D7G4T7
Preferred namePHF5A
KEGG koko:K12834
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005689,GO:0005737,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009410,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1705@1,KOG1705@2759
Ec32 ortholog descriptionU2 snRNP protein Rds3p
Ec32 orthologEc-20_000410.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons5
Model size806
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1403.6146.1prot_M-pyrifera_M_contig1403.6146.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1403 14838..19089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.3083622-UTR-M-pyrifera_M_contig1403:14364..148371622815833.3083622-UTR-M-pyrifera_M_contig1403:14364..14837Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1403 14365..14837 -
1692277595.9641411-UTR-M-pyrifera_M_contig1403:14364..148371692277595.9641411-UTR-M-pyrifera_M_contig1403:14364..14837Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1403 14365..14837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.3219476-CDS-M-pyrifera_M_contig1403:14837..148821622815833.3219476-CDS-M-pyrifera_M_contig1403:14837..14882Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1403 14838..14882 -
1692277595.977399-CDS-M-pyrifera_M_contig1403:14837..148821692277595.977399-CDS-M-pyrifera_M_contig1403:14837..14882Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1403 14838..14882 -
1622815833.3360782-CDS-M-pyrifera_M_contig1403:15684..158071622815833.3360782-CDS-M-pyrifera_M_contig1403:15684..15807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1403 15685..15807 -
1692277595.9874725-CDS-M-pyrifera_M_contig1403:15684..158071692277595.9874725-CDS-M-pyrifera_M_contig1403:15684..15807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1403 15685..15807 -
1622815833.3527253-CDS-M-pyrifera_M_contig1403:16996..170851622815833.3527253-CDS-M-pyrifera_M_contig1403:16996..17085Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1403 16997..17085 -
1692277595.9976912-CDS-M-pyrifera_M_contig1403:16996..170851692277595.9976912-CDS-M-pyrifera_M_contig1403:16996..17085Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1403 16997..17085 -
1622815833.3653238-CDS-M-pyrifera_M_contig1403:18087..181111622815833.3653238-CDS-M-pyrifera_M_contig1403:18087..18111Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1403 18088..18111 -
1692277596.0092275-CDS-M-pyrifera_M_contig1403:18087..181111692277596.0092275-CDS-M-pyrifera_M_contig1403:18087..18111Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1403 18088..18111 -
1622815833.3804395-CDS-M-pyrifera_M_contig1403:19037..190891622815833.3804395-CDS-M-pyrifera_M_contig1403:19037..19089Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1403 19038..19089 -
1692277596.0195482-CDS-M-pyrifera_M_contig1403:19037..190891692277596.0195482-CDS-M-pyrifera_M_contig1403:19037..19089Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1403 19038..19089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1403.6146.1

>prot_M-pyrifera_M_contig1403.6146.1 ID=prot_M-pyrifera_M_contig1403.6146.1|Name=mRNA_M-pyrifera_M_contig1403.6146.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MAKHHPDLVMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECN
YGSYEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFY
ERKKYGFKKR*
back to top

mRNA from alignment at M-pyrifera_M_contig1403:14365..19089-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1403.6146.1 ID=mRNA_M-pyrifera_M_contig1403.6146.1|Name=mRNA_M-pyrifera_M_contig1403.6146.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4725bp|location=Sequence derived from alignment at M-pyrifera_M_contig1403:14365..19089- (Macrocystis pyrifera P11B4 male)
ATGGCGAAGCATCACCCGGATTTGGTTATGTGCCGCAAGCAACCTGGCAT
CGGTGGGTCGATACCTAGATAATTTCGCCTCGCACCCTTCTCTACCGTTC
TCTACGGGGAGCATATATGCGGGCTGGTAGGTTAGCTCGTGCGCTCGGCT
GGTGCCCGTGTCCGCGGAGCTCCAGTACCCGCGGCATCCGCACCTCCTCT
CTGCTTGCCTGCTTTATTTTACAACACTCGTTGCGTTTCCACAGCAGTTG
TTCCAACGAGCCCAGCGCGACAACAGCAGTAATGGTCCAATAAAGTCGCA
ACACAGCTGCTGCTTCGGTTGTTGCTGTGATCGCGTCGTCCATCGCACCT
ACGGACGGTGCTGAGGGGTGGGCCCTGCTAGCCGTTGTCGCTGTTGTTCT
CGTATTTTTTTTTCTTCGCACGCAGTCGCCTCCCTTGTGCAATGTATCGC
TGAGTTCTTGCCTTGTTTTTATTTATTTCGCGGAACTGCTGAGCTGAGGG
CATGGTGACTGACTGACGCAAAGTGCCGTGTGCACTGGCAGGCATGATGC
GCGATGCGCCGTGCCCACTCCCACGAAGTGAGGTAGCCCAGGGCAAGATA
GGTACCAGGTACCAGTATGACAATTACACTTTACTTTAGTAGGAGCACTT
GGGGTTGTCGCCACGACCGGATGTGATGATATGTATCATTCGAGCATGAT
GAGCATTCCTTGACTCGCGCCTCGTGCACTCGTATTGCTTTTGTGGTGGG
TTCATAGCTGGTGTGGCCGCGTGCAGTGTGGTGATGATGGCCGCAGAGCA
TTCGCGGGTATTAACACGAATGGTTCTTGTCCCGTGAACCCGCCTCCCTC
GTCCCACGACAACCAGGCGTAACCTCCCGCCGTCCGTCCCTTGTGTGCGT
GCGCCCGCGTTTTCGCCTCGAATTGCTTGCCGCCGACGGTGTACGTACTG
CCTTTCCCGCTGTGCGGTTCCTGTGCAGCGATCGGCCGACTGTGCGAGAA
ATGTGAGTGCTCAGACGAGTATCTTGTACGTACGATATGGGTTCGTGAAG
GATATGATACTATTAATATCAATACTGTAGGTTGGTGAGCCCCCACGCCC
CCACGCCCCCACGTACGAGTAGTATTAATAGTGATGCCTCATACAGCAGT
GGTCCTGGCACAAAATACACCGGTACAGCAGTATTGATAGTATCATGCGT
ACCTGGTACCCTGGCAGGGTTATTGATTTTTGATCTTTAGGCCTTTTGAG
TTCGTCTCCCTTCACAAGCAGTAGAGTCCAGCAGCACTTGTACCTTGTTT
TGTTTAAATTGTGCATCCTTGCGAGAGGTTTGAGCGTGTCCCCGAGTTTG
TGCTGATACGTACCAGCTCTTACTTTTTTTTTGCCTTTGCCATGCTTATA
TTATACTCGCTCAAGTCGCAAGTACCACGACCACAGAACGAAAACTCGAG
CACTAGCAGGTCGACCTTGCCGGATAGCAAGCACCCCATCGCTCTTAGTT
CTCCGACTGCCGCTTCATGATGCATGAGGCTTACAGGCACGGTAGATATA
AAGAGTACAGCATTGTTGATAGAGTAGTTCTTCCTCACACATCAGCTGCC
TGAGGTTGACCTATATAGATACCGGTATTGTCGTTGAGAGCAACCACAGC
CAGCCTTGGGTGCATAGCATTGTATGATGGAATGATAGCATCAGCATGAT
AGCCCTCCCTCCCTGCACAGCAGTGATGCCAGGAGACGGCAGTTTAGACC
TGTGACGGACGGCCGTCTAGACGTACTATACTATTTTCATCGCGGGAGAT
CCTAAGGGTGGCCGCCTAGACATAAGTGATCCTACCAGGTAGGTTGTAGC
GTGGGAGCTCCTAAAAGAGGTGTGTTCTCGACGCCCGCAACTGCCTTTTA
TTATGACGTATTTGCTACCTACAGTGCACCGCTGATCGTGCTCGTCCCTC
TATTTCGTCTCGCCCTGCTGTCGTCGGCATGTACGGCAATCGCCCACTCC
CTAGGTGACGGCAAGTGTGTCGTCTGCGACTCTTACGTGCGCCCCTGTAC
TCTGGTCCGCATCTGCGACGAGTGCAATTACGGCTCCTATGAGGTCAGTG
ATCCCTCCCTCTGCCTGCCTGCCGTCGACCCATTTGTTTTTGGACAAACT
ACTTGGAATTTCACTGATTTGTCCCCAAAACGGGACTGCAGTCCTAAAAG
GGTTTAAGCCACCCTGTACTTTCCACAATTCCGGGCAATCATAGTAATTA
GAACCAAGTATGTTTTGTGAACGTGGGAGGATACTACGTTTTCGCGGGTC
CGTCGTGGTTTCTGATTACTATCCCCCCCCTCCGTATTATTGATGGTACT
GCTGTATGTAGACCAGTGTGTTGGGGCTTCCACCCGTATGTACTGCTGTA
GGCGTGATCGTGCTTGGCTTGTTATTTTCGTCGAACGTGAGCGTGCGTGC
CTTGGAGGTAAATAATTATTTATGCTTGACCTTGCTTATGTTACGTGATT
TTCCGCGCTATCCATAGGCTTGATCGTGTTTGACTCCTTTTGTGTGCAAC
TGTAAGCTCTGCGCGCGGTTTTCATGGTCTTCCGAAGCACCGATATCCGA
TTGAGCTTGGTGAGTATGGCTGTACATGCCACCGCTTTGGGCGGGAATAT
AAGAACCGGTGGGCTATAAGTATGAAGAACAAACGGTCGTTATATTTTCG
CCCAGATTGGTACTATTTTAGGCCCCACGCACAGCAACCCGGCCCTGAGA
GTCGAACCTAGTGAGCGGAAGCTTGCGCGCCAAAATGTAAATGTTCGACG
GGGAAAGTGGCGAGAGACGGATTAGATTGGTCACGTTTGTCACACGGAAC
GTGCAGTAGCAACACGCGGTTCGCCCGTCAAACGGGATTTGTGCACCCCG
TCCGAGCCTTGCTGCATTGATGTGCCGCCACCTGAGTAGGCAATCCTATT
GTGCTGTGCCAATGAAGACCCTACACCATATGATCACGTCGGTTGGCTTT
CCTGGGACAAGCCCAACACCTCACACGTTTTCCATGCACCACGGCGGTGG
TCATTTCTATGTTTTTTTTTCTCGATGGGACTTCCTTTGGCCACCTTCGC
CTTACTGCTTGCTGTGCCTCTCCTCATCCTGAGGGGGCAATGAGGGGTCA
ACGCCGTTGTACTACACCGATGTACACCCTTATATACGTTGGTTGACTTC
CTTGAGACAAAACTAACACCCCGCGCGTGTTGCCTTCGCCACGTTGGTAT
TTTCTTTTTTTCTTTCTGCGACGCAAAATTAGGGGAGGTGCACGATCTGC
GGTGGGCCAGGCATCTCGGACGCTTACTACTGCCGAGAGTGCACTCAGCA
GGAGAAGGACCGCGATGGTTGTCCGAAGATTGTCAACCTGGGAAGCTCCA
AGACGGTGAGCGTTTTTTTTCGTGTGTTGGTGTGGTTTTGTTGCCCACGT
GATACACGATAAAATGTAGTAATGTTCGCGGCATGTCGACAAAGTGTTAC
ATGTCGGACAGATCATGCACAGATAGATTGTAGATAGATCATATTTCGTG
TACAGATAATCATCTAGATCCCACCCACGTAAGCTGCCGGTATGAGATGT
GGTGCAGGATCTGCGTAGTACGGGTACGGTTCCAACCCAGGAAACCTGAC
GTAGAGACCCTCGTATGCACAGATTAGACGGCTCCGACGCGGTCACATGA
GCTAGATCATGTAGATCATACCCATCAGGAATCTATGTGCCCTAAAACAT
TTAGGTCGTCAAGTGGGAATTATCTATCTGATCTGTCCGATGTGTGTCAC
AAAATTGGGAGTGCGGATTGAGCCATGCGTTCGGCGTTGGGCAAGAGAAC
GCTTGGAAACAAATGTACGTAGCGCGTTGCTTTCGACCCGACAGCGATGC
GTGTTTTTCGAATGGGCGTCGACTGGCGTGGTTAAAACGGGAAATGGTGG
TTATTTATCCGTGCCATGCTTGTCCGGGTCAGCATCTTGGGGTAATTATT
TTGTCAGTCTGTTGATTCAATACCGAAAAATTCACCGTATGGGACTGGAA
CCCCTGAAGAGGCGTGTTTCCTCCGTACTCGTTGCGCGTTTCACTTTGCG
TTCAGGTCGACGCTGTGTGAATTGAATATCGAAAACAATCGACCAACACG
GTGCCCGCCCCCGCTTGCATTGTTGACTGCTGTTTGCCGTTTTGCAAATG
CTCTCAGGATTTGTTCTACGAACGGAAGAAGTACGGCTTCAAAAAGAGAT
GATGCTGGTGGCCTGCGCCGAAACGACTGAACTGATCAGTTTGTTGTGGG
CGTCGGCCGGGGAGGACAAGGATATGCCCTATCGAAGTACAGCACAGCAT
GTCTACTACAGTACGTAACAGTAGTAGCCCTGTGTTGGAAATGTAAGGTG
TTGGGAGGTTTATGGATGGAAGTGTGACTTTCATTTAGGGAGATGAGTAT
AGCACAGCACGTCTACTGTAAGCAGTGTGTTTATGTTGGAAAATCAAAGG
TGTTGGAAGGATAAGTTTTCAGACGCGAAGAAGTATATTAGTAGATGGAT
CTCTGGCTTTCGTTGATGCAGTCTTCTAGTGCGCGGAGTCGTGGGGATCT
GTGGGAGGGTGTTCGAGCGTTGAAGGCGGTACTTGCGCGCACGAATGGGT
GGGGGAAAAACATGACGTAAGGGAATATTGGAAAGGACAAACAGGTGGCG
AGCGGGGGGGCGGCCGCTTGATACC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1403:14365..19089-

>mRNA_M-pyrifera_M_contig1403.6146.1 ID=mRNA_M-pyrifera_M_contig1403.6146.1|Name=mRNA_M-pyrifera_M_contig1403.6146.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig1403:14365..19089- (Macrocystis pyrifera P11B4 male)
ATGGCGAAGCATCACCCGGATTTGGTTATGTGCCGCAAGCAACCTGGCAT
CGATGGCGAAGCATCACCCGGATTTGGTTATGTGCCGCAAGCAACCTGGC
ATCGCGATCGGCCGACTGTGCGAGAAATCGATCGGCCGACTGTGCGAGAA
ATGTGACGGCAAGTGTGTCGTCTGCGACTCTTACGTGCGCCCCTGTACTC
TGGTCCGCATCTGCGACGAGTGCAATTACGGCTCCTATGAGGTGACGGCA
AGTGTGTCGTCTGCGACTCTTACGTGCGCCCCTGTACTCTGGTCCGCATC
TGCGACGAGTGCAATTACGGCTCCTATGAGGGGAGGTGCACGATCTGCGG
TGGGCCAGGCATCTCGGACGCTTACTACTGCCGAGAGTGCACTCAGCAGG
AGAAGGACCGCGATGGTTGTCCGAAGATTGTCAACCTGGGAAGCTCCAAG
ACGGGGAGGTGCACGATCTGCGGTGGGCCAGGCATCTCGGACGCTTACTA
CTGCCGAGAGTGCACTCAGCAGGAGAAGGACCGCGATGGTTGTCCGAAGA
TTGTCAACCTGGGAAGCTCCAAGACGGATTTGTTCTACGAACGGAAGAAG
TACGGCTTCAAAAAGAGATGAGATTTGTTCTACGAACGGAAGAAGTACGG
CTTCAAAAAGAGATGA
back to top