mRNA_M-pyrifera_M_contig1403.6145.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1403.6145.1
Unique NamemRNA_M-pyrifera_M_contig1403.6145.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1403.6145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1403contigM-pyrifera_M_contig1403:13703..14450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size750
Cds size420
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.126814-UTR-M-pyrifera_M_contig1403:13702..140301622815833.126814-UTR-M-pyrifera_M_contig1403:13702..14030Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1403 13703..14030 +
1692277595.8543968-UTR-M-pyrifera_M_contig1403:13702..140301692277595.8543968-UTR-M-pyrifera_M_contig1403:13702..14030Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1403 13703..14030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.1393855-CDS-M-pyrifera_M_contig1403:14030..144501622815833.1393855-CDS-M-pyrifera_M_contig1403:14030..14450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1403 14031..14450 +
1692277595.8657556-CDS-M-pyrifera_M_contig1403:14030..144501692277595.8657556-CDS-M-pyrifera_M_contig1403:14030..14450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1403 14031..14450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1403.6145.1prot_M-pyrifera_M_contig1403.6145.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1403 14031..14450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1403.6145.1

>prot_M-pyrifera_M_contig1403.6145.1 ID=prot_M-pyrifera_M_contig1403.6145.1|Name=mRNA_M-pyrifera_M_contig1403.6145.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
MTAWPLQVARSCLVPSRILDTFLPFSHLISAGVTANATVLPLCKQKQPHP
ETGFDSIVGECHTSFHRSSCLVKLQCKNHEHDPMQLYFPTHQQGVIRASD
IPHYIVVARNTWYQAAAPPLATCLSFPIFPYVMFFPHPFV
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mRNA from alignment at M-pyrifera_M_contig1403:13703..14450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1403.6145.1 ID=mRNA_M-pyrifera_M_contig1403.6145.1|Name=mRNA_M-pyrifera_M_contig1403.6145.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=748bp|location=Sequence derived from alignment at M-pyrifera_M_contig1403:13703..14450+ (Macrocystis pyrifera P11B4 male)
GTTCAGCAAAGCTTGATTTTCGCGCACACACCGACATGGAATATTGTAAT
ATTGTCGCCCACGGCGGCCAAATAGATGACAGCATGACAGCACATTTCCG
ACGCCTGTATCGCGAGATCAACACCGCCATCGACCGCACTATGATACTAC
ATGTAACAGCGCGCACTCCTTGTGCTAGCCTGGCGTGTCAAAGGCGGATG
TCGAGCACTGAGTACAACAAGGCAATATCGCACCCGGCCCTCGACACCTT
TGTTTCCCGATACTAGTGGCTTCCTTGTCGTGAGCAGAAGTTTTGTGTTT
AGACCTATCCATGTGAAACAAAAACGTAATGACTGCCTGGCCGCTGCAGG
TCGCGCGCAGCTGTCTCGTACCCTCGAGGATCCTGGACACGTTTTTGCCT
TTTTCCCATCTCATATCTGCTGGAGTCACCGCCAATGCTACTGTACTTCC
TCTATGTAAGCAAAAACAACCACACCCGGAAACAGGCTTCGATTCCATAG
TAGGCGAATGCCACACAAGTTTCCATCGATCCAGCTGTTTGGTCAAGCTA
CAGTGCAAAAACCATGAGCATGACCCCATGCAACTCTACTTCCCAACGCA
CCAACAAGGTGTAATACGCGCGTCTGACATCCCGCACTACATCGTTGTGG
CGCGAAATACCTGGTATCAAGCGGCCGCCCCCCCGCTCGCCACCTGTTTG
TCCTTTCCAATATTCCCTTACGTCATGTTTTTCCCCCACCCATTCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1403:13703..14450+

>mRNA_M-pyrifera_M_contig1403.6145.1 ID=mRNA_M-pyrifera_M_contig1403.6145.1|Name=mRNA_M-pyrifera_M_contig1403.6145.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig1403:13703..14450+ (Macrocystis pyrifera P11B4 male)
ATGACTGCCTGGCCGCTGCAGGTCGCGCGCAGCTGTCTCGTACCCTCGAG
GATCCTGGACACGTTTTTGCCTTTTTCCCATCTCATATCTGCTGGAGTCA
CCGCCAATGCTACTGTACTTCCTCTATGTAAGCAAAAACAACCACACCCG
GAAACAGGCTTCGATTCCATAGTAGGCGAATGCCACACAAGTTTCCATCG
ATCCAGCTGTTTGGTCAAGCTACAGTGCAAAAACCATGAGCATGACCCCA
TGCAACTCTACTTCCCAACGCACCAACAAGGTGTAATACGCGCGTCTGAC
ATCCCGCACTACATCGTTGTGGCGCGAAATACCTGGTATCAAGCGGCCGC
CCCCCCGCTCGCCACCTGTTTGTCCTTTCCAATATTCCCTTACGTCATGT
TTTTCCCCCACCCATTCGTGATGACTGCCTGGCCGCTGCAGGTCGCGCGC
AGCTGTCTCGTACCCTCGAGGATCCTGGACACGTTTTTGCCTTTTTCCCA
TCTCATATCTGCTGGAGTCACCGCCAATGCTACTGTACTTCCTCTATGTA
AGCAAAAACAACCACACCCGGAAACAGGCTTCGATTCCATAGTAGGCGAA
TGCCACACAAGTTTCCATCGATCCAGCTGTTTGGTCAAGCTACAGTGCAA
AAACCATGAGCATGACCCCATGCAACTCTACTTCCCAACGCACCAACAAG
GTGTAATACGCGCGTCTGACATCCCGCACTACATCGTTGTGGCGCGAAAT
ACCTGGTATCAAGCGGCCGCCCCCCCGCTCGCCACCTGTTTGTCCTTTCC
AATATTCCCTTACGTCATGTTTTTCCCCCACCCATTCGTG
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