mRNA_M-pyrifera_M_contig14027.6143.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14027.6143.1
Unique NamemRNA_M-pyrifera_M_contig14027.6143.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig14027.6143.1 vs. uniprot
Match: D7G7N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N8_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 2.770e-67
Identity = 123/210 (58.57%), Postives = 140/210 (66.67%), Query Frame = 1 
Query:    4 DLAELRILGLHRGLRHPSLLLALTEVVTDNSVGSDAQRAAASALVAFCDRSPTLWKELAKLIRGDAKLLKDFLGQVSTLTSITDHRTQEIAFEAVYRMWKVWKKQPGGPPALPSSTRSEVREGLSGISTTDFESQVRSMLATINTGGVCDS----------DDGGCGGPPFSFPVETVCQVTDWAGLGCEQRLGEVRWLDVGGDSISIQV 603
            DL +     LHRGLR P+LLLAL  +V DN  GS AQRAA SALVAFCD SP LWKELAK +R    LL+ FL   S L SI DHRTQE+ FEA+YR+WKVWKKQ GGPP LP STR E+ EG S I+  DFE Q R+MLA +N+    D           D+ G   PP SFPVE + QVT+W GLG   RLGE   LD+GGDSISIQV
Sbjct:   11 DLPDTASAELHRGLRRPALLLALVGIVQDNKAGSGAQRAAGSALVAFCDSSPGLWKELAKEVRSSKTLLQGFLKPASMLASIADHRTQELVFEALYRLWKVWKKQRGGPPQLPPSTRREIAEGFSSITIDDFEGQTRAMLAAVNSRPNGDDGEDGEYDPEEDEKGWLSPPSSFPVEALLQVTEWRGLGLRDRLGEAHHLDIGGDSISIQV 220
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BLAST of mRNA_M-pyrifera_M_contig14027.6143.1 vs. uniprot
Match: A0A6H5LAM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAM6_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.600e-39
Identity = 91/218 (41.74%), Postives = 105/218 (48.17%), Query Frame = 1 
Query:  154 SPTLWKELAKLIRGDAKLLKDFLGQVSTLTSITDHRTQEIAFEAVYRMWK----------------------------------------------------------VWKKQPGGPPALPSSTRSEVREGLSGISTTDFESQVRSMLATINTGGVCDSDDG----------GCGGPPFSFPVETVCQVTDWAGLGCEQRLGEVRWLDVGGDSISIQV 603
            SP LWKELAK +R    LL+ FL   STL SI DHRTQE+ FEA+YR+WK                                                          VWKKQ GGPP L  STR E+ EG S I+  DFE Q R+MLA +N+    + DD           G   PP SFPVE + QVT+W GLG   RLGE   LD+GGDSISIQV
Sbjct:   23 SPGLWKELAKEVRSSKTLLQGFLKSASTLASIADHRTQELVFEALYRLWKASLLRRGTCASDRAPRFPKVQRQQARKYRQGEKEDAKLSPICSTVECAPDNPERILPKVWKKQRGGPPQLLPSTRREIAEGFSSITIDDFEGQTRAMLAAVNSRPNKNDDDDAEYDPQEGEKGWLSPPSSFPVEALLQVTEWRGLGLRDRLGEAHHLDIGGDSISIQV 240
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14027.6143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7N8_ECTSI2.770e-6758.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LAM6_9PHAE1.600e-3941.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14027contigM-pyrifera_M_contig14027:5337..8290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_001630.1
Exons4
Model size603
Cds size603
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14027.6143.1prot_M-pyrifera_M_contig14027.6143.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14027 5337..8290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815833.0440962-CDS-M-pyrifera_M_contig14027:5336..54861622815833.0440962-CDS-M-pyrifera_M_contig14027:5336..5486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14027 5337..5486 +
1692277595.8091996-CDS-M-pyrifera_M_contig14027:5336..54861692277595.8091996-CDS-M-pyrifera_M_contig14027:5336..5486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14027 5337..5486 +
1622815833.0579987-CDS-M-pyrifera_M_contig14027:6300..64531622815833.0579987-CDS-M-pyrifera_M_contig14027:6300..6453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14027 6301..6453 +
1692277595.817726-CDS-M-pyrifera_M_contig14027:6300..64531692277595.817726-CDS-M-pyrifera_M_contig14027:6300..6453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14027 6301..6453 +
1622815833.075835-CDS-M-pyrifera_M_contig14027:7402..76121622815833.075835-CDS-M-pyrifera_M_contig14027:7402..7612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14027 7403..7612 +
1692277595.8255424-CDS-M-pyrifera_M_contig14027:7402..76121692277595.8255424-CDS-M-pyrifera_M_contig14027:7402..7612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14027 7403..7612 +
1622815833.0932872-CDS-M-pyrifera_M_contig14027:8200..82901622815833.0932872-CDS-M-pyrifera_M_contig14027:8200..8290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14027 8201..8290 +
1692277595.8376145-CDS-M-pyrifera_M_contig14027:8200..82901692277595.8376145-CDS-M-pyrifera_M_contig14027:8200..8290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14027 8201..8290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14027.6143.1

>prot_M-pyrifera_M_contig14027.6143.1 ID=prot_M-pyrifera_M_contig14027.6143.1|Name=mRNA_M-pyrifera_M_contig14027.6143.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=201bp
SDLAELRILGLHRGLRHPSLLLALTEVVTDNSVGSDAQRAAASALVAFCD
RSPTLWKELAKLIRGDAKLLKDFLGQVSTLTSITDHRTQEIAFEAVYRMW
KVWKKQPGGPPALPSSTRSEVREGLSGISTTDFESQVRSMLATINTGGVC
DSDDGGCGGPPFSFPVETVCQVTDWAGLGCEQRLGEVRWLDVGGDSISIQ
V
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mRNA from alignment at M-pyrifera_M_contig14027:5337..8290+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14027.6143.1 ID=mRNA_M-pyrifera_M_contig14027.6143.1|Name=mRNA_M-pyrifera_M_contig14027.6143.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2954bp|location=Sequence derived from alignment at M-pyrifera_M_contig14027:5337..8290+ (Macrocystis pyrifera P11B4 male)
TCAGACCTGGCGGAGCTGAGGATCCTTGGGCTGCACCGTGGTCTCCGGCA
CCCTTCATTGCTCCTCGCTCTGACCGAAGTCGTGACGGACAACAGCGTGG
GCTCCGACGCGCAACGAGCGGCGGCGTCCGCCCTTGTGGCGTTTTGCGAC
GTGAGCTTGTGCAAGTTTCAATATTGGGAGTTAATACATTTGGAGTTAAT
ACATTTTCGCTCGATCTCTGTACGAAACGAAACATACCAAGACAACTACT
TACGCTGAAATTAGCGTGATGCAGGGTACATTCAACCCCACGTGAGAAGT
TTGGCCTGACCCAAAATCAGAGTGCCCTGTCGTTTGTAGAAGCTCGGAGT
CCCCGGACGTCGACTTTTCAGTGCGAAAGGGTGGTAAAACGCTAGCCTCT
CTTGGTGAACGTACCACTGGGAATTAGAGTTGTTTGCTCTTTGTGGCAGT
GGACCGATTGATTTAGTACTTGCTATATTGCTCTGGATTTAGAACCCCAT
CATAATCCCTGACGCATTTCCTTGAGTACTCCTTCAAAACTTGACTGGAC
CTTTAGCATTTTGCTTTGATTGCAGCAGCCAGCATTGACATGTGTGGCGT
TTTGATCACTCGGTATTTTCGTACATAGGCCTCGTACAGTGGTTGCTCGA
AGCCCTCCTACCGATTGGAAATCGGATTCGATGTCGACGGCGCAATAAAG
GTCGAAAACAATATTGAAATCAAGATTGAAACCAAGATAGAAACCAAGAT
AGAAACCAAGATAGAAACCAAGATTGAAATCAATTTTAAAACCGAGACTA
AAATCGAGATCGGTATCAATGTTGAAATCAAGATCGAAATCAAGTTCAAA
GTCAAGATCGAAATCAAGATCGAAGTCAAGGTCAAAGTCAAGACTGAAAT
CAAGATCGAAATCAATATCGAAATCAACATCGAAATCAGCTTGCTGTGCT
TACTTCAACAACAGAGGTCGCCAACGCTGTGGAAAGAGCTTGCCAAGCTG
ATTCGAGGTGATGCGAAACTTCTCAAAGACTTTCTGGGGCAGGTTTCGAC
CCTGACCTCGATTACGGACCACCGCACCCAGGAGATCGCCTTCGAGGCTG
TCTATCGCATGTGGAAGGTGACTTATTTGACTCCCTAACGTCTTCGCTCG
AATGGATGTTTTTCTTGCAGAGGAGGACGGAAAACGACGGTTACTGTTTC
ATCCATGAAGATATGGTAGCTCTAGCTAGGATCTCACGTTCTAGGCGGCT
GTTTTAACCGTCGTCAACTAACGTGTTCGCTGGTGGAAGGATATGGCGAA
AACAAATAACAGTGAAGCTTTTCGGTCGGGCTTATCCCTATTCCGATACA
AAATCAATCCCACTTTACGTCCACGTAGAGTCGACGAAGGAAGAGAGGGC
GAAAGTCTTTTCTGTTGCGATAAATAGCCGTAGTGGGGATGGGGAGGGCA
GAGGAAAGCCTGCTGTGTGACCGCGGGTCTGAGTTACGGCTAGGAGGGAG
AGAGAAAGCAAGTGGAACGGGGAAAAATAGGGATTTCTCCGCCCCCGTTG
TAGGCTATTGGGTACCTACCGTCCACTGCACCCGTCGTCGGACGTTGGTA
CTCATTCCCCTTTTAGAGCTACTGTGTGGATGAAAAGGATCCCTGATACA
TACTGGTACCAGACAGAGTCTCTGTGAAACCGTTGCGGTGTGCTAGATGG
ATCAGTGGGTGGTCTTAGTCGTTGCTCTTCATTGGCACAATAAGAAAGGG
ACCCCACACTATTTTGGTTCATGTTGAACACGCGGACGCCCTTGGCGGCT
GCTCCATCTACAACCAGTAAGGTGGTTCTAACCTGGACACCCATGAACAG
GTATCCGAATCGAGATGAAATCGATACACAAAATACGACCAATGAGAAAA
AACGGGCATGGACCCTCCTTCTCACCGACAATAGGGGCAACACATCAAAG
CAAGTTTGGGCATGCAGTTCGTACCCACAACCATAATATTTGCAACAAAC
ACGGCACAAAACGAGTTTCGTGTGTTCCGTGTATTCTATTTTGGGGTAAA
TGCTGGGCCTAACAAGGTGTGGAAGAAGCAGCCGGGCGGTCCCCCGGCCT
TGCCATCCTCGACTCGCAGCGAAGTTAGGGAGGGGCTGTCGGGCATCTCC
ACTACCGACTTTGAGAGCCAGGTCCGGTCCATGCTTGCCACTATCAACAC
AGGCGGCGTCTGTGACAGCGATGATGGCGGATGCGGTGGGCCCCCCTTCT
CGTTTCCTGTGGAGACGGTGTGCCAGGTGGGAGAGGAAAGCGACGAACCG
GCTTCTGAAATATCCTACAGTTGCTAAACGCATACGTGGCCGGTTATTTA
CGCCGCTTGTTGTGCACACCTTCTTATTCTGAGCTTGGAGAAAGAGATGC
GCTTGCTATTGGAGGCCTTCATTTTCTTGAATTTCGATCTTCCGTCACCA
GACCTCACGCACGATGCCTTCACTTAACACTTGATCCACAGGAAATCGTG
GCAGCCGACAAGGACAACATGATGCTCATCGGACGCATGCTTGCCCTTAT
TGTGGTAGCGCCTAACGCTTTCTTTTAGGATCCTCACTTGAGGAGCTCTG
TACCTCACTAAAAAAGCTGATTTTGATAAAAGTTAAAAAGGCAACCAACG
AACGATCTCACAGCCTGCTATAGGTATACCACAACGAATAATATATGGAA
AGCGCGAACGAATATCCAGTAATAGGGGGTCAACGATCCCGGTCAGTAAG
AAAATGTTTGTCCGAAGAGTGCTACGCCTATCGTAGCACGCATCAGCGTC
CCTTTCGGCGACCCGCTCTGGCGATGTTTTCGTGCACGCGGGCACCGTCC
GCGATTTTCTGCAGGTTACCGATTGGGCGGGGCTAGGCTGCGAACAACGC
CTAGGGGAAGTCAGGTGGCTCGATGTAGGTGGTGACTCGATCAGCATCCA
GGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14027:5337..8290+

>mRNA_M-pyrifera_M_contig14027.6143.1 ID=mRNA_M-pyrifera_M_contig14027.6143.1|Name=mRNA_M-pyrifera_M_contig14027.6143.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1206bp|location=Sequence derived from alignment at M-pyrifera_M_contig14027:5337..8290+ (Macrocystis pyrifera P11B4 male)
TCAGACCTGGCGGAGCTGAGGATCCTTGGGCTGCACCGTGGTCTCCGGCA
CCCTTCATTGCTCCTCGCTCTGACCGAAGTCGTGACGGACAACAGCGTGG
GCTCCGACGCGCAACGAGCGGCGGCGTCCGCCCTTGTGGCGTTTTGCGAC
TCAGACCTGGCGGAGCTGAGGATCCTTGGGCTGCACCGTGGTCTCCGGCA
CCCTTCATTGCTCCTCGCTCTGACCGAAGTCGTGACGGACAACAGCGTGG
GCTCCGACGCGCAACGAGCGGCGGCGTCCGCCCTTGTGGCGTTTTGCGAC
AGGTCGCCAACGCTGTGGAAAGAGCTTGCCAAGCTGATTCGAGGTGATGC
GAAACTTCTCAAAGACTTTCTGGGGCAGGTTTCGACCCTGACCTCGATTA
CGGACCACCGCACCCAGGAGATCGCCTTCGAGGCTGTCTATCGCATGTGG
AAGAGGTCGCCAACGCTGTGGAAAGAGCTTGCCAAGCTGATTCGAGGTGA
TGCGAAACTTCTCAAAGACTTTCTGGGGCAGGTTTCGACCCTGACCTCGA
TTACGGACCACCGCACCCAGGAGATCGCCTTCGAGGCTGTCTATCGCATG
TGGAAGGTGTGGAAGAAGCAGCCGGGCGGTCCCCCGGCCTTGCCATCCTC
GACTCGCAGCGAAGTTAGGGAGGGGCTGTCGGGCATCTCCACTACCGACT
TTGAGAGCCAGGTCCGGTCCATGCTTGCCACTATCAACACAGGCGGCGTC
TGTGACAGCGATGATGGCGGATGCGGTGGGCCCCCCTTCTCGTTTCCTGT
GGAGACGGTGTGCCAGGTGTGGAAGAAGCAGCCGGGCGGTCCCCCGGCCT
TGCCATCCTCGACTCGCAGCGAAGTTAGGGAGGGGCTGTCGGGCATCTCC
ACTACCGACTTTGAGAGCCAGGTCCGGTCCATGCTTGCCACTATCAACAC
AGGCGGCGTCTGTGACAGCGATGATGGCGGATGCGGTGGGCCCCCCTTCT
CGTTTCCTGTGGAGACGGTGTGCCAGGTTACCGATTGGGCGGGGCTAGGC
TGCGAACAACGCCTAGGGGAAGTCAGGTGGCTCGATGTAGGTGGTGACTC
GATCAGCATCCAGGTGGTTACCGATTGGGCGGGGCTAGGCTGCGAACAAC
GCCTAGGGGAAGTCAGGTGGCTCGATGTAGGTGGTGACTCGATCAGCATC
CAGGTG
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