mRNA_M-pyrifera_M_contig14016.6139.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14016.6139.1
Unique NamemRNA_M-pyrifera_M_contig14016.6139.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig14016.6139.1 vs. uniprot
Match: A0A6H5L2H1_9PHAE (Acylphosphatase-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2H1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.400e-27
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1
Query:    1 GGYFRAQARNEAHFNRKLCGALKELGNGKTEIIVEGKTSAIRSFTRWCKKGPG 159
            GGYFRA ARNEAHFNRKLCGALKELG G+TEIIVEGKTSAIRSF RWCK+GPG
Sbjct:  106 GGYFRAHARNEAHFNRKLCGALKELGQGQTEIIVEGKTSAIRSFLRWCKRGPG 158          
BLAST of mRNA_M-pyrifera_M_contig14016.6139.1 vs. uniprot
Match: A0A835YRR3_9STRA (Acylphosphatase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRR3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.210e-17
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 GGYFRAQARNEAHFNRKLCGALKELGNGKTEIIVEGKTSAIRSFTRWCKKGPGECRAVN 177
            GGYFRA ARNEAH+ R+L GAL+E  + +TEIIVEGK SAI SF RWC+KGPG  + ++
Sbjct:   73 GGYFRAHARNEAHYMRRLSGALQEYPD-RTEIIVEGKRSAIDSFVRWCRKGPGLSQQIS 130          
BLAST of mRNA_M-pyrifera_M_contig14016.6139.1 vs. uniprot
Match: A0A7S2XVC5_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.980e-14
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 GGYFRAQARNEAHFNRKLCGALKELGNGKTEIIVEGKTSAIRSFTRWCKKGPGECRAVN 177
            GGYFRAQ +NEA   R L GAL+EL +G T+++VEG    I SF +WCK+GPG  + V+
Sbjct:   77 GGYFRAQCKNEAFRFRGLLGALRELPDGSTKVVVEGPEQKILSFLKWCKRGPGLTQIVD 135          
BLAST of mRNA_M-pyrifera_M_contig14016.6139.1 vs. uniprot
Match: A0A6V2T9H1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2T9H1_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 2.840e-12
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 GGYFRAQARNEAHFNRKLCGALKELGNGKTEIIVEGKTSAIRSFTRWCKKGPGECRAVN 177
            GG++RA A+ EA F+R+L G +++L  G  EI+VEG    + SF  WCK+GPG  +A++
Sbjct:  120 GGFYRAMAKKEASFHRRLVGGIRDLRCGSVEIVVEGPRKKLESFIGWCKRGPGLTQAIS 178          
BLAST of mRNA_M-pyrifera_M_contig14016.6139.1 vs. uniprot
Match: A0A522VBH3_9GAMM (Acylphosphatase n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A522VBH3_9GAMM)

HSP 1 Score: 51.2 bits (121), Expect = 5.840e-7
Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   10 FRAQARNEAHFNRKLCGALKELGNGKTEIIVEGKTSAIRSFTRWCKKGPGECRAVN 177
            +RA A  +A  +R L G +K L +G+ EI+ EG  +A+ +F  WC++GP   R  N
Sbjct:   17 YRATACEQAQ-SRSLTGWVKNLADGRVEIVAEGNANAVAAFLDWCRRGPSHARVDN 71          
BLAST of mRNA_M-pyrifera_M_contig14016.6139.1 vs. uniprot
Match: UPI001ED9C887 (acylphosphatase n=1 Tax=Dissulfurimicrobium hydrothermale TaxID=1750598 RepID=UPI001ED9C887)

HSP 1 Score: 49.3 bits (116), Expect = 3.640e-6
Identity = 22/59 (37.29%), Postives = 34/59 (57.63%), Query Frame = 1
Query:    1 GGYFRAQARNEAHFNRKLCGALKELGNGKTEIIVEGKTSAIRSFTRWCKKGPGECRAVN 177
            G ++RA A ++A     L G +K L +G+ E++ EG + AI +F  WC+KGP      N
Sbjct:   17 GVFYRASAMDKA-MQLDLTGWVKNLADGRVELVAEGSSEAIDAFISWCRKGPPYAHVTN 74          
BLAST of mRNA_M-pyrifera_M_contig14016.6139.1 vs. uniprot
Match: A0A0S8FUN7_9BACT (Acylphosphatase n=1 Tax=candidate division WOR_3 bacterium SM23_42 TaxID=1703779 RepID=A0A0S8FUN7_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 3.800e-6
Identity = 24/59 (40.68%), Postives = 31/59 (52.54%), Query Frame = 1
Query:    1 GGYFRAQARNEAHFNRKLCGALKELGNGKTEIIVEGKTSAIRSFTRWCKKGPGECRAVN 177
            G +FRA  RN A  +  L G ++ L +G+ E+I EG    I  F RWC KGP      N
Sbjct:   17 GVFFRAHTRNVAQAS-DLTGWVRNLPDGRVEVIAEGGRDRIAEFIRWCHKGPAMASVAN 74          
BLAST of mRNA_M-pyrifera_M_contig14016.6139.1 vs. uniprot
Match: A0A2S5QMF9_9GAMM (Acylphosphatase n=2 Tax=Methylococcaceae TaxID=403 RepID=A0A2S5QMF9_9GAMM)

HSP 1 Score: 47.8 bits (112), Expect = 1.340e-5
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 1
Query:    1 GGYFRAQARNEA-HFNRKLCGALKELGNGKTEIIVEGKTSAIRSFTRWCKKGPGECRAVN 177
            G YFR   +N+A HF   + G+++ L +G+ EII E +   I  F +WC KGP   R  N
Sbjct:   14 GVYFRVFTQNKAKHFG--IYGSVRNLPDGRVEIIAEAEHPVIEKFIKWCHKGPVTARVDN 71          
BLAST of mRNA_M-pyrifera_M_contig14016.6139.1 vs. uniprot
Match: G3J184_METTV (Acylphosphatase n=5 Tax=Methylobacter tundripaludum TaxID=173365 RepID=G3J184_METTV)

HSP 1 Score: 47.4 bits (111), Expect = 1.900e-5
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 1
Query:    1 GGYFRAQARNEA-HFNRKLCGALKELGNGKTEIIVEGKTSAIRSFTRWCKKGP 156
            G YFR   +N+A HF  K  G++K L +G+ EII E  + AI  F +WC KGP
Sbjct:   14 GVYFRLFTQNKAKHFAIK--GSVKNLPDGRVEIIAEAGSMAIEKFIKWCHKGP 64          
BLAST of mRNA_M-pyrifera_M_contig14016.6139.1 vs. uniprot
Match: A0A6N9TQV7_9DELT (Acylphosphatase n=1 Tax=Dissulfurirhabdus thermomarina TaxID=1765737 RepID=A0A6N9TQV7_9DELT)

HSP 1 Score: 47.4 bits (111), Expect = 2.030e-5
Identity = 21/56 (37.50%), Postives = 34/56 (60.71%), Query Frame = 1
Query:    1 GGYFRAQARNEAHFNRKLCGALKELGNGKTEIIVEGKTSAIRSFTRWCKKGPGECR 168
            G +FRA  R+EA     L G ++ L +G+ E++ EG  +A+R+   WC++GP   R
Sbjct:   16 GVFFRASTRDEAR-RLGLSGWVRNLPDGRVELVAEGPEAAVRALEAWCRQGPPYAR 70          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14016.6139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5L2H1_9PHAE1.400e-2790.57Acylphosphatase-like domain-containing protein n=2... [more]
A0A835YRR3_9STRA1.210e-1764.41Acylphosphatase-like domain-containing protein n=1... [more]
A0A7S2XVC5_9STRA3.980e-1454.24Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A6V2T9H1_HETAK2.840e-1245.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A522VBH3_9GAMM5.840e-739.29Acylphosphatase n=1 Tax=Methylococcaceae bacterium... [more]
UPI001ED9C8873.640e-637.29acylphosphatase n=1 Tax=Dissulfurimicrobium hydrot... [more]
A0A0S8FUN7_9BACT3.800e-640.68Acylphosphatase n=1 Tax=candidate division WOR_3 b... [more]
A0A2S5QMF9_9GAMM1.340e-540.00Acylphosphatase n=2 Tax=Methylococcaceae TaxID=403... [more]
G3J184_METTV1.900e-547.17Acylphosphatase n=5 Tax=Methylobacter tundripaludu... [more]
A0A6N9TQV7_9DELT2.030e-537.50Acylphosphatase n=1 Tax=Dissulfurirhabdus thermoma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14016contigM-pyrifera_M_contig14016:8058..8234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue5e-21
Seed eggNOG ortholog2880.D8LR73
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Acylphosphatase
EggNOG OGs2C3YV@1,2SES2@2759
Ec32 ortholog descriptionAcylphosphatase-like domain
Ec32 orthologEc-06_004110.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.7922256-CDS-M-pyrifera_M_contig14016:8057..82341622815832.7922256-CDS-M-pyrifera_M_contig14016:8057..8234Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14016 8058..8234 +
1692277595.6851304-CDS-M-pyrifera_M_contig14016:8057..82341692277595.6851304-CDS-M-pyrifera_M_contig14016:8057..8234Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14016 8058..8234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14016.6139.1prot_M-pyrifera_M_contig14016.6139.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14016 8058..8234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14016.6139.1

>prot_M-pyrifera_M_contig14016.6139.1 ID=prot_M-pyrifera_M_contig14016.6139.1|Name=mRNA_M-pyrifera_M_contig14016.6139.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
GGYFRAQARNEAHFNRKLCGALKELGNGKTEIIVEGKTSAIRSFTRWCKK
GPGECRAVN
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mRNA from alignment at M-pyrifera_M_contig14016:8058..8234+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14016.6139.1 ID=mRNA_M-pyrifera_M_contig14016.6139.1|Name=mRNA_M-pyrifera_M_contig14016.6139.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig14016:8058..8234+ (Macrocystis pyrifera P11B4 male)
GGCGGTTACTTCCGAGCGCAGGCCAGGAACGAGGCCCACTTCAACCGCAA GCTGTGCGGGGCGCTAAAGGAGCTGGGGAATGGAAAGACGGAGATTATCG TAGAGGGCAAGACGAGCGCCATCCGCAGCTTCACGCGGTGGTGCAAGAAA GGTCCCGGTGAGTGCCGTGCCGTCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14016:8058..8234+

>mRNA_M-pyrifera_M_contig14016.6139.1 ID=mRNA_M-pyrifera_M_contig14016.6139.1|Name=mRNA_M-pyrifera_M_contig14016.6139.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig14016:8058..8234+ (Macrocystis pyrifera P11B4 male)
GGCGGTTACTTCCGAGCGCAGGCCAGGAACGAGGCCCACTTCAACCGCAA
GCTGTGCGGGGCGCTAAAGGAGCTGGGGAATGGAAAGACGGAGATTATCG
TAGAGGGCAAGACGAGCGCCATCCGCAGCTTCACGCGGTGGTGCAAGAAA
GGTCCCGGTGAGTGCCGTGCCGTCAATGGCGGTTACTTCCGAGCGCAGGC
CAGGAACGAGGCCCACTTCAACCGCAAGCTGTGCGGGGCGCTAAAGGAGC
TGGGGAATGGAAAGACGGAGATTATCGTAGAGGGCAAGACGAGCGCCATC
CGCAGCTTCACGCGGTGGTGCAAGAAAGGTCCCGGTGAGTGCCGTGCCGT
CAAT
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