mRNA_M-pyrifera_M_contig14015.6138.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14015.6138.1
Unique NamemRNA_M-pyrifera_M_contig14015.6138.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig14015.6138.1 vs. uniprot
Match: Q8QNB2_ESV1K (EsV-1-175 n=2 Tax=root TaxID=1 RepID=Q8QNB2_ESV1K)

HSP 1 Score: 399 bits (1025), Expect = 7.730e-136
Identity = 183/258 (70.93%), Postives = 223/258 (86.43%), Query Frame = 3 
Query:  267 YIKDDMILQMKKWRAAKSPGGFSGNARIDELICKVPLIPDYMKEYRLTETDRTSSSNLAKKSVETRSMDCVDIPDANALLDRCIERIKENKDSVFVIAACLSLVCGRRSIELLKTGSFSEAGEPHAPYNCFFSGAAKKKVPCEDRCEIPLLIKYKYLKPALRRVRETIPCESLSNSQINSRYSHKLGDAAKIITNDMKVRFHDLRCIYGVLSHRMFENNCSINVWLKKALCHEALDTSIFYSRCKIGKCDKKYGKWLF 1040
            Y+KDDMI+QMKKWRAAKSP G +G+ ++D+L+CKV L+PDYMKEYRLTETDRTSSS L+KKS+ETRSMDCV+IPDA+ L++RCIE+IK N +  FV+AAC+SLVCGRRSIE+LKTG FSE  +    Y+CFF+GAAKKKV C+D+CEIPLLIKYKYLK +L+RVRE IPCE+L+N  INS+YSHKLGDAAKI+T +M+VRFHDLR +YG++SHR F+NNCSIN+WL K L HEALDTSIFYSR +I KC    G+W F
Sbjct:   93 YMKDDMIMQMKKWRAAKSPAGLTGDEKLDDLVCKVQLLPDYMKEYRLTETDRTSSSELSKKSLETRSMDCVEIPDADELVERCIEKIKANTECPFVLAACISLVCGRRSIEILKTGEFSEGTDARGHYSCFFTGAAKKKVVCKDKCEIPLLIKYKYLKHSLKRVRENIPCENLTNQAINSKYSHKLGDAAKILTGNMRVRFHDLRGLYGMISHRTFKNNCSINIWLTKTLLHEALDTSIFYSRFRIDKCSTNRGEWAF 350
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BLAST of mRNA_M-pyrifera_M_contig14015.6138.1 vs. uniprot
Match: B5LWE9_9PHYC (Putative protelomerase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE9_9PHYC)

HSP 1 Score: 232 bits (591), Expect = 2.490e-70
Identity = 117/261 (44.83%), Postives = 172/261 (65.90%), Query Frame = 3 
Query:  267 YIKDDMILQMKKWRAAKSPGGFSGNARIDELICKVPLIPDYMKEYRLTETDRTSSSNLAKKSVETRSMDCVDIPDANALLDRCIERIKENKDSVFVIAACLSLVCGRRSIELLKTGSFSEAGEPHAPYNCFFSGAAKKKVPCEDRC--EIPLLIKYKYLKPALRRVRETIPC-ESLSNSQINSRYSHKLGDAAKIITNDMKVRFHDLRCIYGVLSHRMFENNCSINVWLKKALCHEALDTSIFYSRCKIGKCDKKYGKWLF 1040
            + +D M  Q+ K + A +    +G+ R D  I  + ++PDYM  YRLT+ D   + +L+   +E R+M CVD+ DA+AL+ +C + +   +D + V+ A L++V GRR+IE+LK G F ++     PY   F+GAAK++    +    ++PLL+K+KY+K AL  +R  IP     SN+ IN+R+SHKLGDAAKIITN +  RFHDLR IYG ++H  FEN CSIN+WLK+ L H+++DTS+FYSRCK+ KC  + G W F
Sbjct:   83 FQEDKMKEQLLKVKEAAA-NRLTGSKRTDAAIASIKIMPDYMAGYRLTKADIAKNKSLSTDGLEKRAMQCVDVDDADALVSQCTKILVSLEDDIHVVVAALAVVTGRRAIEILKVGEFRKS-VGKGPYAMSFNGAAKRREKNSESTSQDVPLLVKFKYVKRALDLIRSRIPIGPDDSNAVINARFSHKLGDAAKIITNSVSTRFHDLRAIYGCVTHVAFENKCSINIWLKRVLLHDSIDTSVFYSRCKVSKCLLRLGDWDF 341
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BLAST of mRNA_M-pyrifera_M_contig14015.6138.1 vs. uniprot
Match: Q6XLY5_9PHYC (FirrV-1-B51 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLY5_9PHYC)

HSP 1 Score: 223 bits (567), Expect = 3.020e-66
Identity = 110/257 (42.80%), Postives = 164/257 (63.81%), Query Frame = 3 
Query:  267 YIKDDMILQMKKWRAAKSPGGFSGNARIDELICKVPLIPDYMKEYRLTETDRTSSSNLAKKSVETRSMDCVDIPDANALLDRCIERIKENKDSVFVIAACLSLVCGRRSIELLKTGSFSEA-GEPHAPYNCFFSGAAKKKVPCEDRCEIPLLIKYKYLKPALRRVRETIPCESLSNSQINSRYSHKLGDAAKIITNDMKVRFHDLRCIYGVLSHRMFENNCSINVWLKKALCHEALDTSIFYSRCKIGKCDKKYGKW 1034
            +  D M  Q+ K + A S G  +G+ R D +I  + ++P+YM++YRLT+ D   +   +   +E R+M+C+++ DA+ L+  CI  +K+ ++ V +I A L++V GRR IE+ KTG F         PY   F G AKK+       ++PLL KYKY++ A+  VR  I   +L N+ IN++ SH++GDAAKI+T  +  RFHDLR IYG ++H +FEN CSIN+WLK  L H+ +DTS++YSRCKI KC  K G+W
Sbjct:  118 FHNDTMKEQLHKIQQA-SAGKLTGSRRTDAIIAGIKIMPEYMRDYRLTKEDLNRNKESSSAFLELRAMNCIEVDDADQLVSACIPILKDLEEDVHMIMAALAVVTGRRCIEIAKTGHFMPTPSNARWPYAMRFDGVAKKRGTDFQPRDVPLLAKYKYVRRAVDHVRAKICVSNLPNNIINAKLSHRVGDAAKILTGRLSTRFHDLRAIYGCVTHMVFENTCSINIWLKHVLLHDNIDTSVYYSRCKIAKCTLKMGRW 373
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BLAST of mRNA_M-pyrifera_M_contig14015.6138.1 vs. uniprot
Match: A0A835Z4K7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 7.750e-32
Identity = 83/237 (35.02%), Postives = 134/237 (56.54%), Query Frame = 3 
Query:  297 KKWRAAKSPGGFSGNARIDELICKVPLIPDYMKEYRLTETDRTSSSNLAKKSVETRSMDCVDIPDANALLDRCIERIKENKDSVFVIAACLSLVCGRRSIELLKTGSFSEAGEPHAPYNCFFSGAAKKKVPCEDRCEIPLLIKYKYLKPALRRVRETIPCESLSNSQINSRYSHKLGDAAKIITNDMKVRFHDLRCIYGVLSHRM-FENNCSINVWLKKALCHEALDTSIFYSRCKI 1004
            K  RAA+    F+G ARID +IC + L PDYMKE RLT+ +R +     + +++ +S    ++ DA  L+D+    I+++  + F IA  L+L+ GRR IEL KTGSFS   +  +     FSG AK     +    IPLL  ++ ++ AL R+R   PC  +SN+ +NS+YS +   AA+      + +FHD R  YGV+ + +   +  S+N+++ + L H  L+ S+ Y+   +
Sbjct:  101 KAQRAARRIA-FTGEARIDAIICDIRLFPDYMKELRLTDGERIALKKRGEDALDKKSSSAWEL-DAGVLVDKARGVIEDDISAPFDIACALALLTGRRMIELFKTGSFSAGADATS---AVFSGQAKTGSAEDHPYRIPLLCPFRSVEVALSRLRRMKPCGDMSNAAVNSKYSGRCNVAARQWLGPGR-KFHDFREGYGVVCYNLCLPHKWSLNLFVSRVLGHSGLENSLHYTAIHV 331
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14015.6138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNB2_ESV1K7.730e-13670.93EsV-1-175 n=2 Tax=root TaxID=1 RepID=Q8QNB2_ESV1K[more]
B5LWE9_9PHYC2.490e-7044.83Putative protelomerase n=1 Tax=Feldmannia species ... [more]
Q6XLY5_9PHYC3.020e-6642.80FirrV-1-B51 n=1 Tax=Feldmannia irregularis virus a... [more]
A0A835Z4K7_9STRA7.750e-3235.02Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14015contigM-pyrifera_M_contig14015:2399..3441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score67.4
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog1283337.B0ZSI2_BPHA1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pfam:Telomere_res
EggNOG OGs4QASF@10239,4QJR7@10662,4QT38@28883,4QZZT@35237
COG Functional cat.S
Best tax levelMyoviridae
Best eggNOG OGNA|NA|NA
Exons1
Model size1043
Cds size762
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.74204-CDS-M-pyrifera_M_contig14015:2398..31601622815832.74204-CDS-M-pyrifera_M_contig14015:2398..3160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14015 2399..3160 -
1692277595.653193-CDS-M-pyrifera_M_contig14015:2398..31601692277595.653193-CDS-M-pyrifera_M_contig14015:2398..3160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14015 2399..3160 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.7560248-UTR-M-pyrifera_M_contig14015:3160..34411622815832.7560248-UTR-M-pyrifera_M_contig14015:3160..3441Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14015 3161..3441 -
1692277595.6678948-UTR-M-pyrifera_M_contig14015:3160..34411692277595.6678948-UTR-M-pyrifera_M_contig14015:3160..3441Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14015 3161..3441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14015.6138.1prot_M-pyrifera_M_contig14015.6138.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14015 2399..3160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14015.6138.1

>prot_M-pyrifera_M_contig14015.6138.1 ID=prot_M-pyrifera_M_contig14015.6138.1|Name=mRNA_M-pyrifera_M_contig14015.6138.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp
MILQMKKWRAAKSPGGFSGNARIDELICKVPLIPDYMKEYRLTETDRTSS
SNLAKKSVETRSMDCVDIPDANALLDRCIERIKENKDSVFVIAACLSLVC
GRRSIELLKTGSFSEAGEPHAPYNCFFSGAAKKKVPCEDRCEIPLLIKYK
YLKPALRRVRETIPCESLSNSQINSRYSHKLGDAAKIITNDMKVRFHDLR
CIYGVLSHRMFENNCSINVWLKKALCHEALDTSIFYSRCKIGKCDKKYGK
WLF*
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mRNA from alignment at M-pyrifera_M_contig14015:2399..3441-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14015.6138.1 ID=mRNA_M-pyrifera_M_contig14015.6138.1|Name=mRNA_M-pyrifera_M_contig14015.6138.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1043bp|location=Sequence derived from alignment at M-pyrifera_M_contig14015:2399..3441- (Macrocystis pyrifera P11B4 male)
AAGAAGGATTCCATGCCTTCCAAATTCATCCTTGACCAGGCGGAGCTGCT
CTACCATACGAAAAATGCGAAGCCCGTGCTCGACAACTTGAGGCAGAAGT
ATGCCCTCTCCTCGTTTCCGTCGCAGATGAGCCGCGTGAAAGTTGAGTGG
TGCAAGTTCGGAGAGCGCCACGAAGACTTTTTCACGTCCATGGACACGGT
CTATGCCGCGGCGTGCTCGCCGGAAAGCGGGTGCTCCAAGCGGGCGGTGA
AAGAATTGAAGCAGTATATATCAAAGACGACATGATACTTCAGATGAAGA
AGTGGAGGGCGGCAAAGTCTCCTGGCGGCTTTTCCGGCAACGCCAGAATT
GATGAGCTTATTTGCAAGGTCCCGCTGATCCCTGACTACATGAAGGAGTA
CCGACTGACGGAGACGGACAGAACCAGCAGCTCCAACCTTGCCAAGAAAA
GCGTGGAGACGAGGTCGATGGACTGCGTAGACATACCCGACGCTAACGCC
TTGCTGGACCGGTGCATCGAAAGAATAAAAGAAAACAAGGACAGCGTGTT
TGTTATTGCCGCCTGTCTGAGTCTAGTGTGTGGCCGTCGGTCCATTGAGC
TCTTGAAAACCGGTAGCTTCTCCGAAGCAGGAGAACCGCACGCGCCGTAC
AACTGCTTCTTTTCCGGCGCAGCAAAAAAGAAGGTGCCGTGCGAGGACCG
CTGTGAGATTCCGCTCTTGATCAAGTATAAATATTTGAAACCTGCGCTGA
GACGGGTGAGAGAAACCATCCCGTGCGAAAGCCTAAGCAACTCGCAAATC
AATTCCAGGTATAGCCACAAGCTCGGTGATGCCGCCAAGATTATCACCAA
TGACATGAAAGTTCGCTTTCACGACCTTCGGTGCATCTATGGGGTGTTGT
CGCACCGAATGTTTGAGAACAATTGCTCCATTAATGTTTGGTTGAAGAAA
GCTCTGTGCCACGAGGCGCTAGATACCTCAATCTTTTATTCTAGATGCAA
AATTGGGAAATGCGACAAGAAGTACGGTAAGTGGTTGTTTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14015:2399..3441-

>mRNA_M-pyrifera_M_contig14015.6138.1 ID=mRNA_M-pyrifera_M_contig14015.6138.1|Name=mRNA_M-pyrifera_M_contig14015.6138.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1524bp|location=Sequence derived from alignment at M-pyrifera_M_contig14015:2399..3441- (Macrocystis pyrifera P11B4 male)
ATGATACTTCAGATGAAGAAGTGGAGGGCGGCAAAGTCTCCTGGCGGCTT
TTCCGGCAACGCCAGAATTGATGAGCTTATTTGCAAGGTCCCGCTGATCC
CTGACTACATGAAGGAGTACCGACTGACGGAGACGGACAGAACCAGCAGC
TCCAACCTTGCCAAGAAAAGCGTGGAGACGAGGTCGATGGACTGCGTAGA
CATACCCGACGCTAACGCCTTGCTGGACCGGTGCATCGAAAGAATAAAAG
AAAACAAGGACAGCGTGTTTGTTATTGCCGCCTGTCTGAGTCTAGTGTGT
GGCCGTCGGTCCATTGAGCTCTTGAAAACCGGTAGCTTCTCCGAAGCAGG
AGAACCGCACGCGCCGTACAACTGCTTCTTTTCCGGCGCAGCAAAAAAGA
AGGTGCCGTGCGAGGACCGCTGTGAGATTCCGCTCTTGATCAAGTATAAA
TATTTGAAACCTGCGCTGAGACGGGTGAGAGAAACCATCCCGTGCGAAAG
CCTAAGCAACTCGCAAATCAATTCCAGGTATAGCCACAAGCTCGGTGATG
CCGCCAAGATTATCACCAATGACATGAAAGTTCGCTTTCACGACCTTCGG
TGCATCTATGGGGTGTTGTCGCACCGAATGTTTGAGAACAATTGCTCCAT
TAATGTTTGGTTGAAGAAAGCTCTGTGCCACGAGGCGCTAGATACCTCAA
TCTTTTATTCTAGATGCAAAATTGGGAAATGCGACAAGAAGTACGGTAAG
TGGTTGTTTTAGATGATACTTCAGATGAAGAAGTGGAGGGCGGCAAAGTC
TCCTGGCGGCTTTTCCGGCAACGCCAGAATTGATGAGCTTATTTGCAAGG
TCCCGCTGATCCCTGACTACATGAAGGAGTACCGACTGACGGAGACGGAC
AGAACCAGCAGCTCCAACCTTGCCAAGAAAAGCGTGGAGACGAGGTCGAT
GGACTGCGTAGACATACCCGACGCTAACGCCTTGCTGGACCGGTGCATCG
AAAGAATAAAAGAAAACAAGGACAGCGTGTTTGTTATTGCCGCCTGTCTG
AGTCTAGTGTGTGGCCGTCGGTCCATTGAGCTCTTGAAAACCGGTAGCTT
CTCCGAAGCAGGAGAACCGCACGCGCCGTACAACTGCTTCTTTTCCGGCG
CAGCAAAAAAGAAGGTGCCGTGCGAGGACCGCTGTGAGATTCCGCTCTTG
ATCAAGTATAAATATTTGAAACCTGCGCTGAGACGGGTGAGAGAAACCAT
CCCGTGCGAAAGCCTAAGCAACTCGCAAATCAATTCCAGGTATAGCCACA
AGCTCGGTGATGCCGCCAAGATTATCACCAATGACATGAAAGTTCGCTTT
CACGACCTTCGGTGCATCTATGGGGTGTTGTCGCACCGAATGTTTGAGAA
CAATTGCTCCATTAATGTTTGGTTGAAGAAAGCTCTGTGCCACGAGGCGC
TAGATACCTCAATCTTTTATTCTAGATGCAAAATTGGGAAATGCGACAAG
AAGTACGGTAAGTGGTTGTTTTAG
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