mRNA_M-pyrifera_M_contig14015.6136.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14015.6136.1
Unique NamemRNA_M-pyrifera_M_contig14015.6136.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig14015.6136.1 vs. uniprot
Match: A0A6C0C8W8_9ZZZZ (zf-His_Me_endon domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0C8W8_9ZZZZ)

HSP 1 Score: 202 bits (515), Expect = 1.650e-57
Identity = 125/383 (32.64%), Postives = 201/383 (52.48%), Query Frame = 1 
Query:    4 EIVKTCKKSRCLHLDHFSLVVKNKTADFDHVWGNIVAKTTVDE----DG--CLILNGKSE---YGLSILDGVTMMTHRVVFIIKNNSG---NPIPEFDSDGEPLVIRHICNKPNCVNPICLKLGTRSENSHDDRIVAGTMLYGKQNPNIVVTEDVAREIKLSKRKRKGSEYMTQQQRATLYGVTKGIVNAIDSNTSWSHLPDVNGILESTNTRRKTARKRARVRRLRAWTDQDFVEAGEKIRENIIESNEGKRGEMPPGFCWLWQLSRTRQDYGNVVFKNRSGRSHILSCEVKNRRRARKGEVVRHVCGNNPCCNPGHLVFGYRKDNSADLLLHGTS--KNFRFEPDSVRLV-RDPTKTNAELAKEYRVTQRAIYNIRTRRTW 1107
            ++++TC +  C+ ++H  +  + K    +  W  +     +DE    DG  CL+  G      YG S ++      HR+ F I ++     + IP+ D DG+ LV+RH+C + +C     L++GT S NS++D+I AGTM  G+++ N  ++E++A++IK SK  R    YMT ++RA  +GV+  IV+ ID+N +WSH+PD NGI+ ST  +R+  R      + R WT++ F +A  K+         G++ +    FC LW        Y   +   +    HIL+C +K R     G  V H CG   C NP HL FG   +N+AD  +HGTS  K    + + +RL+ +       +L K+Y V++  I NI   RT+
Sbjct:   63 KLIRTCGEPLCIQIEHIDVKPRAKLVSKEEKWNKLFKCGKIDETSEYDGKKCLVWQGYKSVGGYGESSVNHKKYYVHRIAFWISHDEYETIDDIPDVDDDGQRLVVRHLCGQSSCFESSHLQIGTDSVNSYEDKINAGTMQRGEKHHNCSISEELAKKIKWSKLDRSDKNYMTAKERAVHFGVSFRIVDKIDNNETWSHIPDKNGIILSTARKRERERNAKIKAKNRKWTEKMFKQARWKLDARSKIDRNGRKYKN--SFCRLWTGKCAPDGYARTMIHGKQIFVHILACHIKYRTTNSGGLQVLHKCGRRLCVNPKHLSFGSAIENAADKKMHGTSGRKLTMEQANEIRLLYKSGDYKQIDLTKKYNVSKDTIQNIIHNRTY 443
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BLAST of mRNA_M-pyrifera_M_contig14015.6136.1 vs. uniprot
Match: A0A3G5AB24_9VIRU (HNHc domain-containing protein (Fragment) n=1 Tax=Hyperionvirus sp. TaxID=2487770 RepID=A0A3G5AB24_9VIRU)

HSP 1 Score: 65.1 bits (157), Expect = 1.860e-8
Identity = 43/132 (32.58%), Postives = 71/132 (53.79%), Query Frame = 1 
Query:  166 YGLSILDGVTMMTHRVVFIIKNNSGNPIPEFDSDGEPLVIRHICNKPNCVNPICLKLGTRSENSHDDRIVAGTMLYGKQNPNIVVTEDVAREIKLSKRKRKGSEYMTQQQRATLYGVTKGIVNAIDSNTSWS 561
            YG +   G+ M+ HR+ F+  N    P          L++RH+CN+ +CVNP  L  G   +NS D RI++GT L+G++ P+  +T   A+ I +S+        +  + R+ L+  + GIV+ ID   SW+
Sbjct:   68 YGETKFLGIGMLAHRLSFMAFNQKFIPTD--------LLMRHMCNRKDCVNPDHLATGDAKQNSAD-RIISGTALFGEKCPSAKITASTAKMIFISQ-----ILGLQTKIRSELFNASCGIVSYIDHLKSWT 185
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BLAST of mRNA_M-pyrifera_M_contig14015.6136.1 vs. uniprot
Match: A0A6C0CJF3_9ZZZZ (HNHc domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CJF3_9ZZZZ)

HSP 1 Score: 60.5 bits (145), Expect = 2.190e-6
Identity = 45/155 (29.03%), Postives = 70/155 (45.16%), Query Frame = 1 
Query:  655 TDQDFVEAGEKIRENIIESNEGKRGEMPPGFCWLWQLSR-TRQDYGNVVFKNRSGRSHILSCEVKNRRRARKGEVVRHVCGNNPCCNPGHLVFGYRKDNSADLLLHGTSKNFRFEPDS-------VRLV--RDPTKTNAELAKEYRVTQRAIYNI 1089
            T ++F     K +  I++S    + E P   CW+    + T+  Y       +S   H  S  V       + +VVRH+C N  CCNP HL  G  K NS D+L HGT       P+S       ++++  +D   T  E ++ + V+ R+I  I
Sbjct:   90 TRKEFAWVRFKNKLEILKS----KVEDPIKDCWVDNTKQPTKDGYIRTSINCKSLGLHRASYMVYKNMNLCRSKVVRHMCNNKKCCNPNHLEEGTVKQNSEDMLKHGTRLLGEKHPNSKISRELALKIIASKDNGMTRKEKSEHFGVSARSIQRI 240
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BLAST of mRNA_M-pyrifera_M_contig14015.6136.1 vs. uniprot
Match: A0A4V2ZZL4_9BURK (HNH endonuclease n=1 Tax=Paraburkholderia silviterrae TaxID=2528715 RepID=A0A4V2ZZL4_9BURK)

HSP 1 Score: 57.0 bits (136), Expect = 2.830e-6
Identity = 41/142 (28.87%), Postives = 64/142 (45.07%), Query Frame = 1 
Query:  724 RGEMPPGFCWLWQLSRTRQDYGNVVFKNRSGRSHILSCEVKNRRRARKGEVVRHVCGNNPCCNPGHLVFGYRKDNSADLLLHGTSK--------NFRFEPDSVRLVR------DPTKTNAELAKEYRVTQRAIYNIRTRRTW 1107
            R  +  G C  +     +  YG V  + ++  +H +S E+ N       +V+ H C N  C NP HL  G R DN  D++  G  +        N +  P+ V  +R        T  +  LA+EY ++Q A++ I  RRTW
Sbjct:    9 RRTVTVGECLEFAGYICKAGYGLVWHEGKNRLAHRVSFELHNSPITGTQDVM-HSCDNRKCINPAHLSLGTRLDNMHDMIAKGRDRHPKGLHAGNVKATPEIVAEIRRRFKPYSRTDGSMALAREYGLSQGAVWAILERRTW 149
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BLAST of mRNA_M-pyrifera_M_contig14015.6136.1 vs. uniprot
Match: A0A6J5NL52_9CAUD (Uncharacterized protein n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J5NL52_9CAUD)

HSP 1 Score: 54.7 bits (130), Expect = 2.090e-5
Identity = 38/132 (28.79%), Postives = 58/132 (43.94%), Query Frame = 1 
Query:  748 CWLWQLSRTRQDYGNVVFKNRSGRSHILSCEVKNRR-RARKGEVVRHV-CGNNPCCNPGHLVFGYRKDNSADLLLHGTSK----------NFRFEPDSVRLVRDPTKTNAELAKEYRVTQRAIYNIRTRRTW 1107
            CW+W     R  +G      +   +H L+  +      A  G+   H  C N  CCNP HL +G + +NSAD    G             N +   ++V+L+R    +   +A++  V+QR I  IR R TW
Sbjct:   23 CWIWTGWANRFGHGRFDVGVKKYLAHRLALVLGGFPVPAAPGDCALHGDCSNPACCNPRHLRWGTKAENSADRDRLGRGDWSNALGEGNCNAKLTAEAVQLIRRSELSQRAMARQLGVSQRTICQIRRRETW 154
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BLAST of mRNA_M-pyrifera_M_contig14015.6136.1 vs. uniprot
Match: A0A2D2W2R4_9CAUD (HNH endonuclease n=1 Tax=Escherichia phage PGT2 TaxID=2047782 RepID=A0A2D2W2R4_9CAUD)

HSP 1 Score: 52.4 bits (124), Expect = 8.200e-5
Identity = 27/77 (35.06%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:  871 EVVRHVCGNNPCCNPGHLVFGYRKDNSADLLLHGT-SKNF--RFEPDSVRLVRDPTKTNAELAKEYRVTQRAIYNIR 1092
            EVV H+C N  C NP HLV G + DN  D +  G   +NF  +   D+VR +R    TN ++A+++ +    +  I+
Sbjct:   48 EVVLHLCDNQRCINPEHLVGGTQADNIRDAVEKGRWVRNFPNKLSADTVRAIRSAVGTNKQIAQQFNIDPAHVSRIK 124
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14015.6136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6C0C8W8_9ZZZZ1.650e-5732.64zf-His_Me_endon domain-containing protein n=1 Tax=... [more]
A0A3G5AB24_9VIRU1.860e-832.58HNHc domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6C0CJF3_9ZZZZ2.190e-629.03HNHc domain-containing protein n=1 Tax=viral metag... [more]
A0A4V2ZZL4_9BURK2.830e-628.87HNH endonuclease n=1 Tax=Paraburkholderia silviter... [more]
A0A6J5NL52_9CAUD2.090e-528.79Uncharacterized protein n=1 Tax=uncultured Caudovi... [more]
A0A2D2W2R4_9CAUD8.200e-535.06HNH endonuclease n=1 Tax=Escherichia phage PGT2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14015contigM-pyrifera_M_contig14015:191..1312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score79.7
Seed ortholog evalue3.2e-12
Seed eggNOG ortholog10760.Y28_BPT7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.HNH endonuclease
EggNOG OGs4QAIU@10239,4QNBQ@10744,4QPDE@28883
COG Functional cat.S
Best tax levelPodoviridae
Best eggNOG OGNA|NA|NA
Exons1
Model size1122
Cds size1122
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.6774654-CDS-M-pyrifera_M_contig14015:190..13121622815832.6774654-CDS-M-pyrifera_M_contig14015:190..1312Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14015 191..1312 +
1692277595.6275382-CDS-M-pyrifera_M_contig14015:190..13121692277595.6275382-CDS-M-pyrifera_M_contig14015:190..1312Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14015 191..1312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14015.6136.1prot_M-pyrifera_M_contig14015.6136.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14015 191..1312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14015.6136.1

>prot_M-pyrifera_M_contig14015.6136.1 ID=prot_M-pyrifera_M_contig14015.6136.1|Name=mRNA_M-pyrifera_M_contig14015.6136.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=374bp
MEIVKTCKKSRCLHLDHFSLVVKNKTADFDHVWGNIVAKTTVDEDGCLIL
NGKSEYGLSILDGVTMMTHRVVFIIKNNSGNPIPEFDSDGEPLVIRHICN
KPNCVNPICLKLGTRSENSHDDRIVAGTMLYGKQNPNIVVTEDVAREIKL
SKRKRKGSEYMTQQQRATLYGVTKGIVNAIDSNTSWSHLPDVNGILESTN
TRRKTARKRARVRRLRAWTDQDFVEAGEKIRENIIESNEGKRGEMPPGFC
WLWQLSRTRQDYGNVVFKNRSGRSHILSCEVKNRRRARKGEVVRHVCGNN
PCCNPGHLVFGYRKDNSADLLLHGTSKNFRFEPDSVRLVRDPTKTNAELA
KEYRVTQRAIYNIRTRRTWDCVL*
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mRNA from alignment at M-pyrifera_M_contig14015:191..1312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14015.6136.1 ID=mRNA_M-pyrifera_M_contig14015.6136.1|Name=mRNA_M-pyrifera_M_contig14015.6136.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig14015:191..1312+ (Macrocystis pyrifera P11B4 male)
ATGGAAATTGTGAAAACATGCAAGAAATCACGATGTCTTCATCTGGACCA
TTTTAGTCTCGTGGTCAAGAACAAAACAGCCGATTTCGACCATGTATGGG
GAAATATTGTGGCGAAAACGACTGTCGACGAAGACGGGTGTCTTATTTTA
AATGGAAAGAGTGAATACGGCCTTTCAATACTCGATGGTGTCACCATGAT
GACACACAGGGTCGTGTTCATCATAAAAAATAATTCTGGAAACCCAATTC
CAGAGTTTGATTCAGATGGAGAACCACTGGTCATTAGGCACATTTGCAAC
AAGCCTAATTGCGTGAATCCGATTTGTTTGAAGTTGGGAACACGATCTGA
AAACTCACACGATGATAGAATCGTCGCGGGCACAATGTTGTATGGTAAAC
AAAACCCCAACATCGTCGTGACAGAGGATGTCGCCCGAGAAATCAAACTT
TCCAAGAGAAAAAGAAAAGGTTCGGAGTATATGACTCAGCAACAAAGAGC
CACTCTATACGGAGTAACGAAAGGTATTGTCAATGCCATCGATTCCAATA
CGTCGTGGTCGCATTTGCCAGATGTAAATGGTATTCTTGAGTCGACCAAT
ACACGTAGGAAAACGGCAAGGAAGCGGGCTCGGGTAAGAAGACTTCGGGC
GTGGACAGACCAGGATTTTGTCGAAGCGGGAGAAAAGATTCGGGAGAATA
TCATCGAGAGTAACGAAGGCAAGCGTGGTGAGATGCCACCAGGATTTTGC
TGGCTGTGGCAACTAAGTAGGACTCGACAGGATTATGGCAACGTCGTATT
CAAAAACAGGTCTGGTCGGTCTCACATTCTGTCGTGCGAGGTGAAGAATA
GAAGACGTGCACGCAAGGGGGAAGTTGTGCGTCATGTGTGCGGAAACAAT
CCCTGTTGTAATCCAGGGCACCTTGTGTTTGGATATCGTAAGGATAACTC
GGCCGATCTTTTGCTTCACGGGACCTCAAAAAACTTTAGATTCGAACCCG
ACTCTGTCCGTCTTGTTCGAGATCCGACAAAAACAAACGCCGAGTTGGCA
AAAGAGTATCGTGTAACCCAAAGAGCCATTTACAACATCCGCACGCGTCG
CACATGGGACTGTGTTCTATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14015:191..1312+

>mRNA_M-pyrifera_M_contig14015.6136.1 ID=mRNA_M-pyrifera_M_contig14015.6136.1|Name=mRNA_M-pyrifera_M_contig14015.6136.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2244bp|location=Sequence derived from alignment at M-pyrifera_M_contig14015:191..1312+ (Macrocystis pyrifera P11B4 male)
ATGGAAATTGTGAAAACATGCAAGAAATCACGATGTCTTCATCTGGACCA
TTTTAGTCTCGTGGTCAAGAACAAAACAGCCGATTTCGACCATGTATGGG
GAAATATTGTGGCGAAAACGACTGTCGACGAAGACGGGTGTCTTATTTTA
AATGGAAAGAGTGAATACGGCCTTTCAATACTCGATGGTGTCACCATGAT
GACACACAGGGTCGTGTTCATCATAAAAAATAATTCTGGAAACCCAATTC
CAGAGTTTGATTCAGATGGAGAACCACTGGTCATTAGGCACATTTGCAAC
AAGCCTAATTGCGTGAATCCGATTTGTTTGAAGTTGGGAACACGATCTGA
AAACTCACACGATGATAGAATCGTCGCGGGCACAATGTTGTATGGTAAAC
AAAACCCCAACATCGTCGTGACAGAGGATGTCGCCCGAGAAATCAAACTT
TCCAAGAGAAAAAGAAAAGGTTCGGAGTATATGACTCAGCAACAAAGAGC
CACTCTATACGGAGTAACGAAAGGTATTGTCAATGCCATCGATTCCAATA
CGTCGTGGTCGCATTTGCCAGATGTAAATGGTATTCTTGAGTCGACCAAT
ACACGTAGGAAAACGGCAAGGAAGCGGGCTCGGGTAAGAAGACTTCGGGC
GTGGACAGACCAGGATTTTGTCGAAGCGGGAGAAAAGATTCGGGAGAATA
TCATCGAGAGTAACGAAGGCAAGCGTGGTGAGATGCCACCAGGATTTTGC
TGGCTGTGGCAACTAAGTAGGACTCGACAGGATTATGGCAACGTCGTATT
CAAAAACAGGTCTGGTCGGTCTCACATTCTGTCGTGCGAGGTGAAGAATA
GAAGACGTGCACGCAAGGGGGAAGTTGTGCGTCATGTGTGCGGAAACAAT
CCCTGTTGTAATCCAGGGCACCTTGTGTTTGGATATCGTAAGGATAACTC
GGCCGATCTTTTGCTTCACGGGACCTCAAAAAACTTTAGATTCGAACCCG
ACTCTGTCCGTCTTGTTCGAGATCCGACAAAAACAAACGCCGAGTTGGCA
AAAGAGTATCGTGTAACCCAAAGAGCCATTTACAACATCCGCACGCGTCG
CACATGGGACTGTGTTCTATAAATGGAAATTGTGAAAACATGCAAGAAAT
CACGATGTCTTCATCTGGACCATTTTAGTCTCGTGGTCAAGAACAAAACA
GCCGATTTCGACCATGTATGGGGAAATATTGTGGCGAAAACGACTGTCGA
CGAAGACGGGTGTCTTATTTTAAATGGAAAGAGTGAATACGGCCTTTCAA
TACTCGATGGTGTCACCATGATGACACACAGGGTCGTGTTCATCATAAAA
AATAATTCTGGAAACCCAATTCCAGAGTTTGATTCAGATGGAGAACCACT
GGTCATTAGGCACATTTGCAACAAGCCTAATTGCGTGAATCCGATTTGTT
TGAAGTTGGGAACACGATCTGAAAACTCACACGATGATAGAATCGTCGCG
GGCACAATGTTGTATGGTAAACAAAACCCCAACATCGTCGTGACAGAGGA
TGTCGCCCGAGAAATCAAACTTTCCAAGAGAAAAAGAAAAGGTTCGGAGT
ATATGACTCAGCAACAAAGAGCCACTCTATACGGAGTAACGAAAGGTATT
GTCAATGCCATCGATTCCAATACGTCGTGGTCGCATTTGCCAGATGTAAA
TGGTATTCTTGAGTCGACCAATACACGTAGGAAAACGGCAAGGAAGCGGG
CTCGGGTAAGAAGACTTCGGGCGTGGACAGACCAGGATTTTGTCGAAGCG
GGAGAAAAGATTCGGGAGAATATCATCGAGAGTAACGAAGGCAAGCGTGG
TGAGATGCCACCAGGATTTTGCTGGCTGTGGCAACTAAGTAGGACTCGAC
AGGATTATGGCAACGTCGTATTCAAAAACAGGTCTGGTCGGTCTCACATT
CTGTCGTGCGAGGTGAAGAATAGAAGACGTGCACGCAAGGGGGAAGTTGT
GCGTCATGTGTGCGGAAACAATCCCTGTTGTAATCCAGGGCACCTTGTGT
TTGGATATCGTAAGGATAACTCGGCCGATCTTTTGCTTCACGGGACCTCA
AAAAACTTTAGATTCGAACCCGACTCTGTCCGTCTTGTTCGAGATCCGAC
AAAAACAAACGCCGAGTTGGCAAAAGAGTATCGTGTAACCCAAAGAGCCA
TTTACAACATCCGCACGCGTCGCACATGGGACTGTGTTCTATAA
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