mRNA_M-pyrifera_M_contig14008.6135.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14008.6135.1
Unique NamemRNA_M-pyrifera_M_contig14008.6135.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig14008.6135.1 vs. uniprot
Match: A0A6H5JEG6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEG6_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.960e-47
Identity = 95/128 (74.22%), Postives = 105/128 (82.03%), Query Frame = 2 
Query:    5 DFIRDSMLAAMLAKNQIFPSLNLLVVPVDMGV-SDGDGGKG----FGKPLSYEEEGYVAAPADEDKWRAVMREEFEAAERQGAAKTSASGDGIVLVVSQKGKVLRRGVGIPIWKTIRDDVDPPLKKKK 373
            +F+RDS+LAAMLAKNQIFPSLNLLVVPV+M V SDG G KG    FG  LSYEE+GYVAAP DED WRA+MREEFEAAERQG    S+  DGIVL+VS+KGKVLRRGVGIP+W  IRDDVDPP  K K
Sbjct:  278 EFVRDSILAAMLAKNQIFPSLNLLVVPVEMEVASDGKGAKGLAKGFGTSLSYEEQGYVAAPVDEDGWRALMREEFEAAERQGVVAQSSGKDGIVLLVSKKGKVLRRGVGIPMWNIIRDDVDPPPDKTK 405
[Close]
BLAST of mRNA_M-pyrifera_M_contig14008.6135.1 vs. uniprot
Match: A0A835Z880_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z880_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-18
Identity = 58/128 (45.31%), Postives = 84/128 (65.62%), Query Frame = 2 
Query:    5 DFIRDSMLAAMLAKNQIFPSLNLLVVPVDMG--------VSDGDGGKGFGKPLSYEEEGYVAAPADEDKWRAVMREEFEAAERQGAAKTSASGDGIVLVVSQKGKVLRRGVGIPIWKTIRDDVDPPLK 364
            + +RD+ML A + + +IF + NLL+VPV +         V+D    KGFG   +Y ++G+V  PA+ED+WRA++ EE   A+RQG +K  A+  G+VLVVS+ GKVLRRG+G+P W  IR D+ P  K
Sbjct:  194 EMLRDAMLRATVNR-EIFTANNLLIVPVQVADPSDPTAAVTD----KGFGAKPAYFKQGFVGEPAEEDEWRALVAEEIRDADRQGNSK--AAKQGVVLVVSRDGKVLRRGLGMPKWDMIRQDLYPNAK 314
[Close]
BLAST of mRNA_M-pyrifera_M_contig14008.6135.1 vs. uniprot
Match: A0A7S0CA06_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CA06_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.240e-6
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 2 
Query:   11 IRDSMLAAMLAKNQIFPSLNLLVVP--VDMGVSDGDGGK----GFGKPLSYEEEGYVAAPADEDKWRAVMREEFEAAERQGAAKTSASGDGIVLVVSQKGKVLRRGVGIPIWK 331
            IRD++L A L K + F   N+L+VP  +D G+   D  +    GFG    +E + YVA P +   W +   +E + A  Q   +     +GIV+VVS +GKV+RRGVG   WK
Sbjct:  242 IRDALLGASLMKMEKFALSNVLIVPYDIDRGLRKTDVEQKPSGGFGDTPRWESKAYVAQP-EGIGWDSYAEDEMKDAIEQSGKRVK--NEGIVVVVSNEGKVIRRGVGTVPWK 351
[Close]
BLAST of mRNA_M-pyrifera_M_contig14008.6135.1 vs. uniprot
Match: A0A7S2S088_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S088_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.700e-5
Identity = 40/130 (30.77%), Postives = 65/130 (50.00%), Query Frame = 2 
Query:   11 IRDSMLAAMLAKNQIFPSLNLLVVPVDMGVSDGDG-GKGFGKPLSYEEEGYVAAPADED-------KWRAVMREEFEAAERQ--GAAKTSASGDGIVLVVSQKGKVLRRGVGIPIWKTIRDDVDPPLKKK 370
            +R+S++ A +   + F   N+LVVP      D +G  KGF K     +      P   D        W + ++ E + A  Q  GA       +GIV+V+++ GK++RRG+G+P+W T+ DD+ P    K
Sbjct:  177 VRESLIKAQILGER-FARQNVLVVPYYF---DSNGPSKGFAKDTLISKPYIARIPETSDVSANPVEDWASYIQRELDTAVSQSPGATTVDLKAEGIVVVLNRDGKIVRRGLGVPLWATVIDDLAPAQASK 302
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14008.6135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JEG6_9PHAE1.960e-4774.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z880_9STRA1.200e-1845.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0CA06_9STRA7.240e-638.05Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A7S2S088_9STRA1.700e-530.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14008contigM-pyrifera_M_contig14008:1808..4068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue1.4e-38
Seed eggNOG ortholog2880.D7FLE8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF3493)
EggNOG OGs2DEZ3@1,2S5R7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1288
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14008.6135.1prot_M-pyrifera_M_contig14008.6135.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14008 1830..3168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.6019936-UTR-M-pyrifera_M_contig14008:1807..18291622815832.6019936-UTR-M-pyrifera_M_contig14008:1807..1829Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14008 1808..1829 +
1692277595.580224-UTR-M-pyrifera_M_contig14008:1807..18291692277595.580224-UTR-M-pyrifera_M_contig14008:1807..1829Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14008 1808..1829 +
1622815832.6365035-UTR-M-pyrifera_M_contig14008:3168..40681622815832.6365035-UTR-M-pyrifera_M_contig14008:3168..4068Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14008 3169..4068 +
1692277595.6176956-UTR-M-pyrifera_M_contig14008:3168..40681692277595.6176956-UTR-M-pyrifera_M_contig14008:3168..4068Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14008 3169..4068 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.6161277-CDS-M-pyrifera_M_contig14008:1829..19851622815832.6161277-CDS-M-pyrifera_M_contig14008:1829..1985Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14008 1830..1985 +
1692277595.600703-CDS-M-pyrifera_M_contig14008:1829..19851692277595.600703-CDS-M-pyrifera_M_contig14008:1829..1985Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14008 1830..1985 +
1622815832.6254907-CDS-M-pyrifera_M_contig14008:2958..31681622815832.6254907-CDS-M-pyrifera_M_contig14008:2958..3168Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14008 2959..3168 +
1692277595.6089718-CDS-M-pyrifera_M_contig14008:2958..31681692277595.6089718-CDS-M-pyrifera_M_contig14008:2958..3168Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14008 2959..3168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14008.6135.1

>prot_M-pyrifera_M_contig14008.6135.1 ID=prot_M-pyrifera_M_contig14008.6135.1|Name=mRNA_M-pyrifera_M_contig14008.6135.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MLAAMLAKNQIFPSLNLLVVPVDMGVSDGDGGKGFGKPLSYEEEGYVAAP
ADEDKWRAVMREEFEAAERQGAAKTSASGDGIVLVVSQKGKVLRRGVGIP
IWKTIRDDVDPPLKKKKKDDK*
back to top

mRNA from alignment at M-pyrifera_M_contig14008:1808..4068+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14008.6135.1 ID=mRNA_M-pyrifera_M_contig14008.6135.1|Name=mRNA_M-pyrifera_M_contig14008.6135.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2261bp|location=Sequence derived from alignment at M-pyrifera_M_contig14008:1808..4068+ (Macrocystis pyrifera P11B4 male)
GGGCGACTTCATCCGCGACAGCATGCTGGCCGCCATGCTCGCCAAGAATC
AGATCTTCCCTAGCCTGAACCTGCTCGTGGTCCCGGTAGACATGGGCGTC
AGCGACGGCGACGGGGGCAAAGGGTTCGGCAAGCCGCTGTCGTACGAGGA
GGAAGGTTATGTCGCTGCTCCCGCTGATGTGAGTTTGTGTGTGTTTTTTA
TATTTTGTGGTATCTCTGGAGTGTTCTCCTTTCAGTACTGGGTGTTCGCG
GCTTGGCCCAGCTTCGAAAAATGTGGCAGATATTCAGTCCACACCAACTC
CTCATTACATCTTCGTTCCGCGAAATTCGGTGGTGGTTAGGGTTAGTATT
TTTGTTTGAATTTAGTCAATTGAATTCCCTGCCGCTACGACCGCTCGCTG
TCTCTTATGGTCTTGCTTGGTCATGGCTTGGGTCGTCGCTTGCAACCCGC
ACCCCCCCCCCCTAACCCCCGGCCACGTGTCTGATGAGAGACTTAGTGTG
CTTAGCCGTATCGGGATCTCGCTCAACCAGGTCGCTGCTAGCGCCGACGT
GAGTTTCTTGTCTTTTTTTCGTGTTTGTTCCACAAGTAGTTCTGTCTCTC
TGCTGTGGCCGGCCGAACGTCTTAATGCTGCTACCGTCGCCACCGGCGCT
TCTCTTCGTCTCGTGGCGCTGTTTTGGAGCCGTGGCGCAGGTTCCTCGCT
TGAAATCTCTCACGTTAACCTCCACCCCCTCCTTAACACTCGGGAGTAGT
CGCATCCCCCGCTCGCTGTATTCCTGTCCTTCAGCCCGGTGCCTTGAATA
GTGGCCGCCCGACTGGCGGTTGTGTAGCCCAGTAGGTGCATTACACTTGG
CCCAGCTTGAACAAGATGGCTGATAATCCAAACCTTTGAAACTCCTTGTT
GCATCTCTATCCCGAGACATTTCTGAGATATTCCCTAGACAATCGGGGTT
AGGATTAGTGTTTAAAGTCAAGTATGTTTCCACTAGTTTATGACAGCTGG
GCTGAGGTCTACTTAGTATATACCTACTGTAGTACCTTGTCTATCTTGAC
ACCTGACACCGTTATGATCGAAAGCGGTGGCTGAATGGCTTGACTATTGC
CGTTTGCGCGATTTTTTTTTCCCCACGCCCGGCGTCTCGCGGGTTTCCCA
GGAGGACAAATGGCGTGCCGTAATGCGGGAAGAATTTGAGGCGGCGGAGA
GGCAAGGTGCCGCAAAAACATCTGCCAGCGGGGACGGCATCGTATTGGTA
GTGAGCCAGAAGGGGAAGGTGCTGAGGCGGGGGGTGGGGATTCCCATCTG
GAAAACCATCCGCGATGATGTGGACCCGCCCCTCAAGAAGAAGAAGAAGG
ACGACAAGTAATCGTTGACCTTGAACGGCAACCGTTGACGTTGAATAGTA
ACGGCTGACGTTGCACGGTAACCGGTAACCGTTAACCTTCAATGGTAACC
GCTAACCTTCGACGGTGACCGTTGGCATTCGACGGTAACCGTTGACCTTA
AACGATAGCCGTTGACTTGAAGGGTAACCGTTGGCCTTCATTGGGAAGCG
TTGACCTTGCACGGTAACCGTTGATCTTAGACGGTGCTGCTTTTTCGTTT
AGAATGGTTGGTTTGGCACAGTCTCAACTCTAGAGCGACTCTAAGGAGAC
CTTCCTTATTGCTTTCGTTTCTGCCCCGTTGGAAAAAGTACTTCCAGCCC
CCCGTTTTCAGTCTCTCTTTTTTTTTTGTCCTTCCCTCTTTTCCGTTCTT
GTTGAAACCGTTGGTTCTTTACAGCAGTACACGGCGTTTTCTTTGGCCGA
CTCGAGGAATGCCACCGCTCCTTTTCGGTGCTTAGGCGTCCCCGTTGAGT
TTCTTTCAGAATGGCACCCACGTTTTTTTTATTAAACTTGAGTACCTGAA
ATTAGTGTCGAGACATTTGTGCATTGGGTCCTAGATCTGTATTATTTAGA
TACGAAGCAGGAGGGTTAAAGCCGCTGCGCTGGAAAAATTCTTCACCTCG
GACAGATCGTCGGTTCCCACAGTTTATGATCTAGATTTTTCAAGGCAGAT
CTATGGCCGACATTGTATGGTTTGGCTCATTTGGCCGGGTGAGACCCGTG
TAACCCGCATGGTCTAGCGCACGTTTCTTGGGTTGTATCTGTACTATGCA
GTTCCTGCATAACCTCTCATGATCTATCTGAATTGCCCGAGATGTGAACC
TTTTATAGATGGACTCCGTGGTCGCGACCAAAGAAGAGCGGAGAGCGATG
TCAAACGCTTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig14008:1808..4068+

>mRNA_M-pyrifera_M_contig14008.6135.1 ID=mRNA_M-pyrifera_M_contig14008.6135.1|Name=mRNA_M-pyrifera_M_contig14008.6135.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig14008:1808..4068+ (Macrocystis pyrifera P11B4 male)
ATGCTGGCCGCCATGCTCGCCAAGAATCAGATCTTCCCTAGCCTGAACCT
GCTCGTGGTCCCGGTAGACATGGGCGTCAGCGACGGCGACGGGGGCAAAG
GGTTCGGCAAGCCGCTGTCGTACGAGGAGGAAGGTTATGTCGCTGCTCCC
GCTGATATGCTGGCCGCCATGCTCGCCAAGAATCAGATCTTCCCTAGCCT
GAACCTGCTCGTGGTCCCGGTAGACATGGGCGTCAGCGACGGCGACGGGG
GCAAAGGGTTCGGCAAGCCGCTGTCGTACGAGGAGGAAGGTTATGTCGCT
GCTCCCGCTGATGAGGACAAATGGCGTGCCGTAATGCGGGAAGAATTTGA
GGCGGCGGAGAGGCAAGGTGCCGCAAAAACATCTGCCAGCGGGGACGGCA
TCGTATTGGTAGTGAGCCAGAAGGGGAAGGTGCTGAGGCGGGGGGTGGGG
ATTCCCATCTGGAAAACCATCCGCGATGATGTGGACCCGCCCCTCAAGAA
GAAGAAGAAGGACGACAAGTAAGAGGACAAATGGCGTGCCGTAATGCGGG
AAGAATTTGAGGCGGCGGAGAGGCAAGGTGCCGCAAAAACATCTGCCAGC
GGGGACGGCATCGTATTGGTAGTGAGCCAGAAGGGGAAGGTGCTGAGGCG
GGGGGTGGGGATTCCCATCTGGAAAACCATCCGCGATGATGTGGACCCGC
CCCTCAAGAAGAAGAAGAAGGACGACAAGTAA
back to top