mRNA_M-pyrifera_M_contig14005.6134.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14005.6134.1
Unique NamemRNA_M-pyrifera_M_contig14005.6134.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14005.6134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14005contigM-pyrifera_M_contig14005:5788..6158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size373
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.560802-CDS-M-pyrifera_M_contig14005:5787..60901622815832.560802-CDS-M-pyrifera_M_contig14005:5787..6090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14005 5788..6090 +
1692277595.5598598-CDS-M-pyrifera_M_contig14005:5787..60901692277595.5598598-CDS-M-pyrifera_M_contig14005:5787..6090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14005 5788..6090 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.5718436-UTR-M-pyrifera_M_contig14005:6090..61581622815832.5718436-UTR-M-pyrifera_M_contig14005:6090..6158Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14005 6091..6158 +
1692277595.570564-UTR-M-pyrifera_M_contig14005:6090..61581692277595.570564-UTR-M-pyrifera_M_contig14005:6090..6158Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig14005 6091..6158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14005.6134.1prot_M-pyrifera_M_contig14005.6134.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14005 5788..6090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14005.6134.1

>prot_M-pyrifera_M_contig14005.6134.1 ID=prot_M-pyrifera_M_contig14005.6134.1|Name=mRNA_M-pyrifera_M_contig14005.6134.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
REYNTSIHGFLDKVVERVKIRHQRAQTGTDRTTPPAKCSSELKHILPQNQ
PISRSLLRASAPFLNFLDTLPITRSRRGHATRHPKQKGEYAHKQQQVSAG
*
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mRNA from alignment at M-pyrifera_M_contig14005:5788..6158+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14005.6134.1 ID=mRNA_M-pyrifera_M_contig14005.6134.1|Name=mRNA_M-pyrifera_M_contig14005.6134.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=371bp|location=Sequence derived from alignment at M-pyrifera_M_contig14005:5788..6158+ (Macrocystis pyrifera P11B4 male)
CGTGAATACAACACAAGCATTCATGGTTTTCTTGATAAAGTTGTAGAGAG
GGTGAAAATACGCCACCAACGAGCCCAAACGGGTACCGACCGGACTACGC
CACCAGCGAAGTGTTCATCAGAACTAAAACACATTCTACCGCAAAACCAA
CCCATCTCACGATCCCTGCTACGTGCTTCCGCTCCTTTCCTTAATTTTCT
CGACACCCTACCCATCACACGCTCTCGCCGCGGGCACGCCACACGCCATC
CAAAACAAAAGGGAGAATACGCACATAAGCAGCAACAGGTCTCGGCTGGG
TGACCCCATGAAAAAAAAATCACACAAAAAAACCCCCAACTTGCCCGTGC
CGCTACGTGTACTCGTACAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14005:5788..6158+

>mRNA_M-pyrifera_M_contig14005.6134.1 ID=mRNA_M-pyrifera_M_contig14005.6134.1|Name=mRNA_M-pyrifera_M_contig14005.6134.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig14005:5788..6158+ (Macrocystis pyrifera P11B4 male)
CGTGAATACAACACAAGCATTCATGGTTTTCTTGATAAAGTTGTAGAGAG
GGTGAAAATACGCCACCAACGAGCCCAAACGGGTACCGACCGGACTACGC
CACCAGCGAAGTGTTCATCAGAACTAAAACACATTCTACCGCAAAACCAA
CCCATCTCACGATCCCTGCTACGTGCTTCCGCTCCTTTCCTTAATTTTCT
CGACACCCTACCCATCACACGCTCTCGCCGCGGGCACGCCACACGCCATC
CAAAACAAAAGGGAGAATACGCACATAAGCAGCAACAGGTCTCGGCTGGG
TGACGTGAATACAACACAAGCATTCATGGTTTTCTTGATAAAGTTGTAGA
GAGGGTGAAAATACGCCACCAACGAGCCCAAACGGGTACCGACCGGACTA
CGCCACCAGCGAAGTGTTCATCAGAACTAAAACACATTCTACCGCAAAAC
CAACCCATCTCACGATCCCTGCTACGTGCTTCCGCTCCTTTCCTTAATTT
TCTCGACACCCTACCCATCACACGCTCTCGCCGCGGGCACGCCACACGCC
ATCCAAAACAAAAGGGAGAATACGCACATAAGCAGCAACAGGTCTCGGCT
GGGTGA
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