mRNA_M-pyrifera_M_contig14003.6133.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig14003.6133.1
Unique NamemRNA_M-pyrifera_M_contig14003.6133.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig14003.6133.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 3.560e-91
Identity = 212/309 (68.61%), Postives = 237/309 (76.70%), Query Frame = 1 
Query:   10 SKGRFRRGG--KD-GEAEEEDDTDNGPILPRHRTWEEAQAAVDEADRAWDEDHRRRMARVAELQVRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDGAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDVVLHPRGA-VEKTEEDEEAEDEFEALLSKTMSESVERTKIARATTQVLGHMAVPMVLKNTNIKVATRQSPLTGGSGVAFKLLKRGNKGKMEAQEMVVPASTSLAAQVSRNEEASREESSIIKARVLAYEANIEAAVLAQDSGTVPPPEDYTHFIPKVHNAPLHPDGNRACGKGG 924
            +KGR +R G  KD G A EE++ D+GPILPR+RTWEEAQAAV+E D+ W EDH+RRM+RVAELQ R+               XXXXXXXXXXXXXXXX   A                XXXXXXXX        +VVL+  G  VE+TEED EAEDEFEALLSKTMSESVE+TKIARATTQV+GHMAVP VLKNTN++ AT Q+PLTGGSGVAFKLLKRGNKGKMEAQE+VVP STSLAAQV+RNEEASREES IIKARVLAYEANIEAAV AQD+G +P PEDYT FIPKVHNAPLHP+G +A  K G
Sbjct: 1337 AKGRGQRDGGKKDKGAAAEEEEKDDGPILPRYRTWEEAQAAVEEMDKVWAEDHKRRMSRVAELQGRRDAEGEDTPEEIGTDDXXXXXXXXXXXXXXXXXXEAEEDGNDVDSQRQRDDVXXXXXXXXEQ------EVVLNGWGVGVERTEEDGEAEDEFEALLSKTMSESVEKTKIARATTQVMGHMAVPRVLKNTNVRTATHQAPLTGGSGVAFKLLKRGNKGKMEAQEVVVPESTSLAAQVNRNEEASREESFIIKARVLAYEANIEAAVFAQDAGEIPLPEDYTQFIPKVHNAPLHPEGGKASTKSG 1639
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BLAST of mRNA_M-pyrifera_M_contig14003.6133.1 vs. uniprot
Match: A0A4D9D616_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D616_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.380e-14
Identity = 57/142 (40.14%), Postives = 85/142 (59.86%), Query Frame = 1 
Query:  406 VVLHPRGAVEKTEEDEEAEDEFEALLSKTMSESVERTKI---ARATTQVLGHMAVPMVLKNTNIKVATRQSPLTGGSGVAFKLLKRGNKGKMEAQEMVVPASTSLAAQVSRNEEASREESSIIKARVLAYEANIEAAVLAQD 822
            V +HPR  + KTEED E E  FE   +  +  SVE  K    A AT+  + +M +P  L   + +   +     GGSG+ F +LKRGN+GK+EA+E++VPA TSLA Q+  +++A++EE   +K RVL YE+ +E     +D
Sbjct: 1073 VAVHPRVPL-KTEEDLETEAAFEKAFASMVMHSVEERKTSVRAGATSVSVDNMVLPTTLPKLSHQEQGKGGK-EGGSGLRFCMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKRRVLQYESMVEGGEGGED 1212
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BLAST of mRNA_M-pyrifera_M_contig14003.6133.1 vs. uniprot
Match: W7TWK6_9STRA (Regulator of nonsense transcripts 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWK6_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.100e-14
Identity = 57/142 (40.14%), Postives = 85/142 (59.86%), Query Frame = 1 
Query:  406 VVLHPRGAVEKTEEDEEAEDEFEALLSKTMSESVERTKI---ARATTQVLGHMAVPMVLKNTNIKVATRQSPLTGGSGVAFKLLKRGNKGKMEAQEMVVPASTSLAAQVSRNEEASREESSIIKARVLAYEANIEAAVLAQD 822
            V +HPR  + KTEED E E  FE   +  +  SVE  K    A AT+  + +M +P  L   + +   +     GGSG+ F +LKRGN+GK+EA+E++VPA TSLA Q+  +++A++EE   +K RVL YE+ +E     +D
Sbjct:  544 VAVHPRVPL-KTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTLPKLSHQEQGKGGK-EGGSGLRFCMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGED 683
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BLAST of mRNA_M-pyrifera_M_contig14003.6133.1 vs. uniprot
Match: A0A835YRH9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.400e-12
Identity = 62/171 (36.26%), Postives = 87/171 (50.88%), Query Frame = 1 
Query:  445 EDEEAEDEFEALLSKTMSESVERTKIARATTQVLGHMAVPMVLKNTNIKV--ATRQSPLTGGSGVAFKLLKRGNKGKMEAQEMVVPASTSLAAQVSRNEEASREESSIIKARVLAYEANIEAAVLAQDSGTVPPPEDYTHFIPKVHNAPLHPD---------GNRACGKGG 924
            E  EA+ EFE +L K   E+++++K++  T+    +M  P VL   ++    A+  +   G S VAFKLLKRG KGK E   + +PA T+LA Q  R      +E  IIKARVL YE         QD  T+   E     +P +HNAP+  +         G R  G+GG
Sbjct: 1037 EKSEADYEFELMLGKMQQENLDKSKVSARTSVKADNMDTPSVLSRLSVAEPHASLSAAAAGDSVVAFKLLKRGAKGKSEGVAVHIPADTNLAVQALRASTRESDEREIIKARVLQYE---------QDQRTL---EGSFSPLPSMHNAPISAEAARRASSRTGTRPRGRGG 1195
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BLAST of mRNA_M-pyrifera_M_contig14003.6133.1 vs. uniprot
Match: A0A1V9ZN47_9STRA (Regulator of nonsense transcripts 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZN47_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.940e-10
Identity = 54/134 (40.30%), Postives = 77/134 (57.46%), Query Frame = 1 
Query:  439 TEEDEEAEDEFEALLSKTMSESVERTKIARATTQVLGHMAVPMVLKNTNIKVATRQSPLTGGSGVAFKLLKRGNKGKMEAQEMVVPASTSLAAQVSRNEEASREESSIIKARVLAYEANIEAAVLAQDSGTVPP 840
            T EDEE E  F++L+ +  +E+  R   AR     +  MA+P VLK T+     R       + V F+LLKRGNKGK+EA+E++VP +TSLA    R E+A ++E S +K  VL    N+E   LA++ G   P
Sbjct:  936 TVEDEEFEKAFKSLVMQASNEA--RKHPARVN---VDKMAIPTVLKTTHHLEQPRDE-----NSVVFRLLKRGNKGKLEAREILVPQATSLAQHSQRQEDAGKKEQSELKRLVL---QNVEREELAEEGGVASP 1056
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BLAST of mRNA_M-pyrifera_M_contig14003.6133.1 vs. uniprot
Match: A0A8K1CPI5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPI5_PYTOL)

HSP 1 Score: 67.4 bits (163), Expect = 1.470e-8
Identity = 56/174 (32.18%), Postives = 89/174 (51.15%), Query Frame = 1 
Query:  406 VVLHPRGAVEKTEEDEEAEDEFEALLSKTMSESVERTKIARATTQVLGHMAVPMVLKNTN----IKVATRQSPLTGGSGVAFKLLKRGNKGKMEAQEMVVPASTSLAAQVSRNEEASREESSIIKARVL----------AYEANIEAAVLAQDSGTVPPPEDYTHFIP-KVHNA 882
            +++H R  V+KTEEDE+ E  F+A++S T   S  R  + R     +  MA+P ++K++            +P    +GV F++L+RGNKGK+EA+ ++VP  TSLA    R E A +++ S +K  VL          +    +E    A  S +  P    TH +  +VH A
Sbjct: 1079 LIIHDR--VQKTEEDEDFEKAFKAMMSNT---SEPRKLLGRVG---VDKMAIPTMIKSSTQPPPALAMMTSNPSDNPNGVVFRMLRRGNKGKVEARHLLVPQDTSLAQHSFRQEHAGKQQMSELKRLVLQNVEREDFLISPNTGVEMLSTAPTSSSARPAIQQTHRVQSEVHRA 1244
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BLAST of mRNA_M-pyrifera_M_contig14003.6133.1 vs. uniprot
Match: A0A3F2RQJ9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQJ9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.950e-8
Identity = 61/179 (34.08%), Postives = 98/179 (54.75%), Query Frame = 1 
Query:  406 VVLHPRGAVEKTEEDEEAEDEFEALL--SKTMSESVERTKIARATTQVLGHMAVPMVLKNT-NIKVATRQSPLT---GGS--GVAFKLLKRGNKGKMEAQEMVVPASTSLAAQVSRNEEASREESSIIKARVLAYEANIEAAVLAQDSGTVPPPEDYTHFIPKVHNAPLHPDGNRACGK 918
            +++H R  ++K+EED+E E  F++++  S    + V+R  + +        MA+P V+K+T ++  A     L+    GS  GV F++L+RGNKGK+EA+++VVP  +SLA    R E A ++E S +K  VL    N+E      D+   PP E    F P   +A     GN+A G+
Sbjct: 1041 LIIHDR--IQKSEEDDEFEKAFKSMMHGSSDTRKPVQRVNVDK--------MAIPTVVKSTTSLAPAAPHGMLSLNANGSPDGVVFRILRRGNKGKVEARQLVVPEKSSLAQHSHRQENAGKKEQSELKRLVL---QNMERDEFMNDA---PPMESIPSFGPSRMSANY---GNQAVGQ 1200
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BLAST of mRNA_M-pyrifera_M_contig14003.6133.1 vs. uniprot
Match: B8C0R2_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0R2_THAPS)

HSP 1 Score: 66.2 bits (160), Expect = 3.410e-8
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:  469 FEALLSKTMSESVERTKIARATT---QVLGHM-AVPMVLKNTNIKVATRQS-------PLTGGSGVAFKLLKRGNKGKMEAQEMVVPASTSLAAQVSRNEEASREESSIIKARVLAYEA 792
            FE+ L K   +++ER K++  T    +V   M A P   K   +    ++S       P  G  G++FKLLK+GNKGKME ++ +VP ST+LA + ++ ++ + +E  +IKARVL YEA
Sbjct:  965 FESELRKLTMDALERGKMSARTGAGGKVSSQMPAAPQFAKKPGVAEPKQESEVDPTTNPFGGSEGMSFKLLKKGNKGKMEEKQFLVPTSTNLARRATKVDDEAVKEKEMIKARVLQYEA 1083
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BLAST of mRNA_M-pyrifera_M_contig14003.6133.1 vs. uniprot
Match: A0A7S2RH63_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RH63_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.670e-8
Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:  598 TRQSPLTGGSGVAFKLLKRGNKGKMEAQEMVVPASTSLAAQVSRNEEASREESSIIKARVLAYEANIEAAVLAQDSGTVPPPEDYTHFIPKVHNAPL 888
            +++  L G SG++FKLLKRG+KG++EA+E VVP  T+LA   ++ ++ + +E  ++KARVL YEA  E+A  +   G V   +     +P V N PL
Sbjct:   11 SKKIALGGASGMSFKLLKRGHKGRVEAKEFVVPTQTNLAKLATKQDDEAEKERHMLKARVLQYEA--ESAEQSFSGGNVYMEQAK---LPVVRNRPL 102
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BLAST of mRNA_M-pyrifera_M_contig14003.6133.1 vs. uniprot
Match: A0A1V9YEF4_9STRA (Regulator of nonsense transcripts 2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEF4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.600e-8
Identity = 54/126 (42.86%), Postives = 70/126 (55.56%), Query Frame = 1 
Query:  439 TEEDEEAEDEFEALLSKTMSESVERTKIARATTQVLGHMAVPMVLKNTNIKVATRQSPLTGGSGVAFKLLKRGNKGKMEAQEMVVPASTSLAAQVSRNEEASREESSIIKARVLAYEANIEAAVLA 816
            T EDEE E  F A+    M  S E  K+A         MA+P V+K T+   A R       S V F+LLKRGNKGK+EA+E++VP +TSLA    R E+A ++E S +K  VL    N+E   LA
Sbjct: 1022 TAEDEEFEKAFRAV----MLSSAEARKLAPRGNA--DKMAIPTVVKTTHHLEAPRDE-----SSVVFRLLKRGNKGKLEAREILVPQATSLAQHSQRQEDAGKKEQSELKRLVL---LNVERDELA 1133
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig14003.6133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF3_ECTSI3.560e-9168.61Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A4D9D616_9STRA5.380e-1440.14Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TWK6_9STRA6.100e-1440.14Regulator of nonsense transcripts 2 n=2 Tax=Nannoc... [more]
A0A835YRH9_9STRA2.400e-1236.26Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A1V9ZN47_9STRA5.940e-1040.30Regulator of nonsense transcripts 2 n=1 Tax=Thraus... [more]
A0A8K1CPI5_PYTOL1.470e-832.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RQJ9_9STRA1.950e-834.08Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
B8C0R2_THAPS3.410e-837.82Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2RH63_9STRA3.670e-841.24Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1V9YEF4_9STRA4.600e-842.86Regulator of nonsense transcripts 2 n=1 Tax=Achlya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig14003contigM-pyrifera_M_contig14003:1963..8087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.8
Seed ortholog evalue2.4e-83
Seed eggNOG ortholog2880.D8LEF3
Preferred nameUPF2
KEGG koko:K14327
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007274,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009751,GO:0009753,GO:0009755,GO:0009863,GO:0009867,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019899,GO:0023052,GO:0031503,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0034427,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035690,GO:0035770,GO:0036464,GO:0042162,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0048571,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070727,GO:0070887,GO:0071166,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0098542,GO:0098916,GO:0099536,GO:0099537,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1901701,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsKOG2051@1,KOG2051@2759
Ec32 ortholog descriptionMIF4-like, type 1/2/3
Ec32 orthologEc-00_002070.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons9
Model size1017
Cds size1017
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815832.422483-CDS-M-pyrifera_M_contig14003:1962..20511622815832.422483-CDS-M-pyrifera_M_contig14003:1962..2051Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 1963..2051 -
1692277595.4721422-CDS-M-pyrifera_M_contig14003:1962..20511692277595.4721422-CDS-M-pyrifera_M_contig14003:1962..2051Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 1963..2051 -
1622815832.4321873-CDS-M-pyrifera_M_contig14003:2117..21751622815832.4321873-CDS-M-pyrifera_M_contig14003:2117..2175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 2118..2175 -
1692277595.484285-CDS-M-pyrifera_M_contig14003:2117..21751692277595.484285-CDS-M-pyrifera_M_contig14003:2117..2175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 2118..2175 -
1622815832.4420733-CDS-M-pyrifera_M_contig14003:2738..28341622815832.4420733-CDS-M-pyrifera_M_contig14003:2738..2834Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 2739..2834 -
1692277595.494576-CDS-M-pyrifera_M_contig14003:2738..28341692277595.494576-CDS-M-pyrifera_M_contig14003:2738..2834Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 2739..2834 -
1622815832.4530542-CDS-M-pyrifera_M_contig14003:4602..47571622815832.4530542-CDS-M-pyrifera_M_contig14003:4602..4757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 4603..4757 -
1692277595.5052123-CDS-M-pyrifera_M_contig14003:4602..47571692277595.5052123-CDS-M-pyrifera_M_contig14003:4602..4757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 4603..4757 -
1622815832.466073-CDS-M-pyrifera_M_contig14003:5492..55711622815832.466073-CDS-M-pyrifera_M_contig14003:5492..5571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 5493..5571 -
1692277595.5134895-CDS-M-pyrifera_M_contig14003:5492..55711692277595.5134895-CDS-M-pyrifera_M_contig14003:5492..5571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 5493..5571 -
1622815832.4821243-CDS-M-pyrifera_M_contig14003:6364..65501622815832.4821243-CDS-M-pyrifera_M_contig14003:6364..6550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 6365..6550 -
1692277595.5218885-CDS-M-pyrifera_M_contig14003:6364..65501692277595.5218885-CDS-M-pyrifera_M_contig14003:6364..6550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 6365..6550 -
1622815832.497298-CDS-M-pyrifera_M_contig14003:6981..70221622815832.497298-CDS-M-pyrifera_M_contig14003:6981..7022Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 6982..7022 -
1692277595.5309963-CDS-M-pyrifera_M_contig14003:6981..70221692277595.5309963-CDS-M-pyrifera_M_contig14003:6981..7022Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 6982..7022 -
1622815832.5115721-CDS-M-pyrifera_M_contig14003:7531..77041622815832.5115721-CDS-M-pyrifera_M_contig14003:7531..7704Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 7532..7704 -
1692277595.5403302-CDS-M-pyrifera_M_contig14003:7531..77041692277595.5403302-CDS-M-pyrifera_M_contig14003:7531..7704Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 7532..7704 -
1622815832.5242198-CDS-M-pyrifera_M_contig14003:7947..80871622815832.5242198-CDS-M-pyrifera_M_contig14003:7947..8087Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 7948..8087 -
1692277595.5500255-CDS-M-pyrifera_M_contig14003:7947..80871692277595.5500255-CDS-M-pyrifera_M_contig14003:7947..8087Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig14003 7948..8087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig14003.6133.1prot_M-pyrifera_M_contig14003.6133.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig14003 1963..8087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig14003.6133.1

>prot_M-pyrifera_M_contig14003.6133.1 ID=prot_M-pyrifera_M_contig14003.6133.1|Name=mRNA_M-pyrifera_M_contig14003.6133.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=339bp
KGKSKGRFRRGGKDGEAEEEDDTDNGPILPRHRTWEEAQAAVDEADRAWD
EDHRRRMARVAELQVRQGKQAGDTGGEGGTDEEGQEDDEEEDEEDEDDDD
GAGSGSEQEDGVDGDEKEQEEEEEEGRGMSEGGDDVVLHPRGAVEKTEED
EEAEDEFEALLSKTMSESVERTKIARATTQVLGHMAVPMVLKNTNIKVAT
RQSPLTGGSGVAFKLLKRGNKGKMEAQEMVVPASTSLAAQVSRNEEASRE
ESSIIKARVLAYEANIEAAVLAQDSGTVPPPEDYTHFIPKVHNAPLHPDG
NRACGKGGAGGGGGGVGGGGGRGGGGGGGGGGGGSRKR*
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mRNA from alignment at M-pyrifera_M_contig14003:1963..8087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig14003.6133.1 ID=mRNA_M-pyrifera_M_contig14003.6133.1|Name=mRNA_M-pyrifera_M_contig14003.6133.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6125bp|location=Sequence derived from alignment at M-pyrifera_M_contig14003:1963..8087- (Macrocystis pyrifera P11B4 male)
AAGGGTAAGAGCAAGGGCCGCTTCCGCCGCGGGGGAAAGGACGGCGAAGC
AGAAGAAGAAGACGACACCGACAACGGTCCCATCCTGCCCAGGCATCGCA
CGTGGGAGGAGGCTCAGGCCGCAGTGGATGAGGCGGACAGGTAGGCGAAG
GTGGTGGCGGTGATGGTGATGGGTGGGAATGGTATTGGTCGAGATTGATG
ATGATGGTACTTACGATCGGTTTTTGGTGAGATGAGGATGGTGATGATGG
TAGTGCTGATGCTGGTCATGATCATGATATTGACGATGTTACGATAGTGA
ATATGATGCTGATGACGAACCAGGCCATTTAAAAAACACATACGCTCGTT
GTCCGGTGGAACGTCGACGGCGATGCCTGGCAGAGCCTGGGACGAAGACC
ACAGGCGGCGGATGGCGAGGGTGGCAGAGCTGCAGGTGAGGCAGGGCAAG
CAGGCGGGAGACACTGGGGGGGAAGGGGGGACGGACGAAGAGGGGCAGGA
GGATGACGAGGAGGAAGACGAGGAAGACGAGGACGACGACGACGGAGCGG
GGTCGGGTATGTCCTTACTATATGACATGCTACGTACTGCTACTATATGA
CATGCTACGTACTGCTGTTATATTTTTTGGTGTTGGCTTTGGCTTTCGGT
CTGTTTTTTTGTTTTTTGGGCTGGGTTTGACCTTTTGTGTTTGACTGGGG
TACCGTTTGGCTTTGACTTTTGGGTTTGGCCTGGCATCGTTTGGTAAGGT
TTTGGTGTTGGTTGTATCTTGTGTCAGATCGTTGTGGTTTTGGGTTGGGT
TTCGATTCGATTTGGTTTGGGTTGGTTTTGGTGTCGGATTCGTTGCATGT
ACGTGCCACCAGGTACCGACACATAACTTTGTGTTACGTACCGGTTTGTA
TCAGTGGTTCTATAATGTTTGATTTGTTACTTGTTCTCTTTCGTTTTATT
TTATTTTGGTGCGCTTGTACGTCTCTATTTATTGATTTGCTCGCAGCTTT
TAGGTCCACGTTTGATGTTGTCGTCGTCGTTGTCTTCGTGGTGTGTTGCT
GTTGCTGTGGAGCAGGTTCCGAACAAGAGGATGGCGTCGACGGAGACGAG
AAGGAGGTGAGATAGCTTAGGGTAGGGTAGGTTGGGGTAGAGTGGGTTAG
GGTAGGGCAGGGCAGGGTAGCGTGGGTAGGGTAGGGCAGGGTAGGGTAGG
GTAGGGTAGGGTAGCGCGTGATTTTATCGGTTGACACGGATGGAAGCTAA
GGGGGGAGGCAGGGAGGTACGCTTGGCTGAGGGGAGAAGACTGGATGGCT
GTGTGTTTTTGACTATTTATTTGTCCGTGTTGTTGCTGATGGTGTTGTTG
CTGTTGTTTGATGTTTGGTGATGTTCGTGTCATGTGTTGGTGTTCACATT
TTGTTATTGATATCGTATTCTGAAGAGCAATTGTGTACCCTTTTATATCC
GTCGTATACATGTATGCGTTCGCGTTGATATCGGCTGTTGTCGTCGTTGT
TGTTCATGATATCCTCGTTATTTTTGTTGTTGTCGAGCAGGAGGAGGAGG
AGGAGGAGGGAAGAGGCATGTCTGAGGGAGGGGACGACGTCGTGCTGCAC
CCCCGGGGGGCAGTGGAGAAGACGGAGGAAGACGAGGAGGCGGAAGACGA
ATTTGAGGCACTGCTGAGTAAGACCATGTCAGAGAGCGTAGAGAGAACCA
AGATCGCCAGGGCTACGACGCAGGTGGGGTGTTGCTCATTCGCTGTCTCC
CCCGCCCCTCTTTCCTCCAGCCTCCGCAGGGTTTTACAGAGGCTGGCAGC
GCTGCTGTGGTGTTATTGGCTGTAGACGCCATGATTGCGGTTTTTTTTAC
ATGGGGCGTTCTTTGTTCCGACTGGATTTTTTGTTTGGTCGTTTCGTAGT
GCCGTCGTATAAGCCAGTTGAATTTCAGATAAGATACGATACTTGGGTTC
AGAGATGAGATAGTTGGCGTTCAGACGAGATAAGGCAGTTGAAGTTCAAA
TAACATGAGATGTTTTGAAGTTCAGATAGAAGCTTCAAAGTCCGGATACG
ATTGTTGGGGCTCGAGAGAAGATAACAGTATTTAGGCCAAGACACGGGAA
GGCAGTGCCATATTGTTGAGGGTTAGATAACATACCGATGGGCACGATGA
TAAAAAAAATGAGAAACTGGGAGATAATGTCACAGAAGCCGAGACAAACA
ACTTGATCTTCAGATGAGATAAGACAATCGAAGTTCAGATACGGGCATTG
AAGTCCAGATTTTGATAGTTGAGGTTCAGAGAAGATAACCTAACGTAAAG
CAAGGCAAGGCACAGTAAGGAAATGTAATATCATTGAATTTCAGACAATA
TATCGAACGTTACGATAAGAAAAATGAGCAATTGAAGATAACATCACGTA
AGCTAAAGACAAGGAAAGACGAGACGAGACGAGACGAGATGAGACGAAAA
AATTGAAGATGATAAATATGTGGTGTACAAAATAAGATTCGACGGGGCAC
ATGTGACGCGCTGCAGGTATTGGGGCACATGGCGGTGCCGATGGTGCTCA
AGAACACTAACATCAAGGTGGCAACTCGACAATCGCCGCTCACGGGTGAG
GACGGGTGTCTCTGTTGTGCTGTAGTGTGTTGTGTGCTGGGTTGGATTGG
GTTGGGTTGAGTTGTGCTTTGGTTTGGTGTGCTGTGCTGTGCTGTGCTCT
GCTCTGCTATGTTGTGTTGTTTGTTGTGTTTTGTGTTGTTTGGTGTTGTT
CTTTATTGTGTCGTGTCGTGTTACGTGTTTTGTGCTGCGATGTTGTGGGC
TGTGCTGTTGTGTGTTGTTGGTTGTGTTTTGTGTTGTGTTGTGGTGTTGT
GTTGTGTTGTGCTGTGCTGTTCTGTCACGTGTTGTGCTGGACTGTTGTGT
TTCGCGTGCCGAATTCACACTCATCTAGCTGTTGACCTTGGGGACGAAAA
GAGGGAACACGAGAAATGCCTGGAGGGGCAGAGAAAGCTAGGGTACAAAG
GGAAAGAGAGATGGAGATATGGAAAGCGAGGGAATGTGAGCGAAAGAGAT
AATCACCCCCTTCTCCCCCAAAAACAAATTACAGTTCCACTCCTCCACCT
CTTCTGTCGGATGATCGCTGTCCACCAATCTATTCGTCAAGCTCCTGCCG
ATTGAGACGATTGGCGACGTGAAATCCTTTGTGGGTGGTTTGCCATGGTG
AAGGAAGGGATGGAGGCGGCGGATAACATGTAAACGTCAGTATCCGGTGT
GAATCGCTGTCGACTAAAGCGCAGTCTGACAATCGCTATCGACCGCCATC
GTCGTTGCCCTTTTTTTCTGTTTTTTTCAGGAGGTTCGGGCGTAGCGTTC
AAGCTGCTGAAGCGCGGCAACAAGGGCAAGATGGAAGCGCAGGAGATGGT
GGTGCCTGCTTCCACGTCGCTCGCAGCGCAAGTCAGCCGCAACGAGGAGG
CCAGCCGAGAGGAGAGCTCCATCATCAAGGCCAGGGTGCGTTGTCTTGTG
CGCGTGTTTATCTGTGTGTGCGTGTCTGTCTGTTTGTCAGGATGCCGGGA
TGCTGGCTCTGCGTGCTTGTCTCTTCTGTATGCCTTCACGCATGCCCGTC
GATTTCAGTGTGTCTATCTGTCTGTCCATCTGTCTTGCCTGTCTGTATGT
TTAGATACGTCTACCTGGTATATCTGTATTATCTGCAGTGTTACGTCTAG
CGATAGGCCAGTCTGTCGGTACCTGGTATGTCGATCAGTCGGTGTAGCTG
TCGGTCTGGCGGCCCGACTGCCCGCTGGTCGTGATGTTTGTTCCAGAAGG
TTGCGATGGCTTGGGGTCGGTGCTTGTCTCTTCATGATTGCGCGGGCAGT
ACTACGGTAGGATGACAACATCACGCTCTTCATATGTCACACCTCGGACA
GGTCACCTTTGACGGGGGACCGTAGTAGATAGGAGCAAATATTGTTGGTA
AAAATAGGTGAATATACAGGTTTTTGTGTGAATCGTAGGTCCTTTTTACT
CCGGTCCCCCGCAATAGAGATAACTCCTACTGTACTTTAGATCTTTCATG
CCAGATAGATCATCCCTGATCTGTATGATCTAGCTCATCTTGCCGCGTGG
GAGCCGTTTAGTCTGCATGACCGAGCACCAGTACACCTATTTTTTTTTTC
CTGGGTTGGATCTGTACTGTACAGGTCCTGCACGACGTCTCGTAACGGCA
GGCTAGGAACTACGGTAGGTGATCTGTAGATAGATTATGATTTGTACAAC
CCGTGCACTACTTGAAGCGCAAGTGTCTTGTCGCCAGTCCACGGTGAAGG
AAAGACCGGCGCGGACAACGAAGGACCTCTTTTTCGCGCCGAAAAAAAAT
AAATAGCATGGTACATACGTACGTACTACGTACAGTGTTAGTACCTGACT
GCTGTTGCGGGGGAATCCTGACGGCGTGATATGTATCGGAAAGCTTAAGC
TTGCGACAAAACCCCTTGCCCACTAGTTGGCTGTAAGGAAAGAGACAGTA
TCTCCGGCGAGAGGATGTTTTTTGTTTTTGTTTTTGGTGGACGGGGTTGT
ACGACGCGTGACTGCTTGTAGCACCTCGAATAACCAATTGACCAGCCAAC
CCACGAACTAACCAATCAGCCGACGAACCTGATCCGTCGTGGGCAGCCGT
GGAACGTTTTTCTGTATTATTTTTTTGCGGAGAAGGCCGTTGTTCGGGAT
CTCAAATATGTTTCTGTATCAACCAACCCGCCCATCCACCCACCAACCCA
ATTAACTATCTGACCAACTACCCAACGAAGCTGACCCGTCTAAGGCAGCC
GAAAAGTGCGATCCATTTGTGTTAATAGTACAGTGGCTCTATTTAAGAAT
ATTTTTTGCAGGGCTGTTCACGGGTCGAGTCAAACCTGGCGGATCAGGTC
GGGTCGGGTCGAGCGAGGATGCCCGACCGATCCGTGAGAGTTTAAAAATC
TCCTGAACCGACCCGACCCGACCCGACCCGACCCGATCGGTTAAAAAAAA
CTTCCTGACCCAACCCGCTGGTCGGGTCATGATCCGTGAAGAGCATTGAT
CTTCTTTCCTTGCTATACCCTGTAGACCCCCCCGCGCTTGCGTTTATAAC
CCTTTGTACTATTAATACTGCGAACATTGTCCCACGCTAACTCCAAGTTA
TTTTCTCTCCAACAACGTGGATGCCTACTTATCTAAAAATGATTATAAAG
TTTTTATTTGTATTTATTTATATGCCGCGTGTTGGTTGTGTGGTTGCCTG
CAGGTGCTAGCGTACGAGGCGAACATCGAGGCGGCCGTGCTGGCGCAGGA
CTCCGGGACGGTGCCGCCCCCGGAGGACTACACCCATTTCATCCCAAAGG
TGGGTAGCCTTGGTATAGTTTAACCAAGGTTTCCCCCCCCCCCCCCTCCC
TCCGTGCAGCATACCCCTGGGAATGTTTTCGCTGGATTCGGTGTCGAGTT
GACCACGTTTTGTTTTTTTGCGGTCAAGCGGCTGAAATAGGTGTTGAGAG
TGATCACGGCGTTCCTCGTGTTTCATCGTGGACGCATTTACGTCGGCCCG
CTCATCCACTAGTCGCCGCGTGCGATAGCTGCCCCCCGGTCTCTCTCTCT
CTGCCTCTGTCTCCCTCCCCCCCCCCTCCCTCTTTCCCTCCTTCTCTTTT
TCTCTGCCCCAACTATCACGATACACTGGTGTTGATACTGGTACCGATAC
CGATACTGGTACTGGATGGAGCGGCTTCCGCATCACCGCGGGCTATTGAC
CGCGGAAACGCCGGCTGCTACCACCCTTTGGTCGATTAGGAATCGTTAGA
GCCATAACACAAAACCGTACCACGTACAGCAGTAGTACTCGTACCTGTTC
TTTCCTTCATTGGCAAACGTTCTCCCCTTGGGATGTGCCCGGTGTCATTT
CACCACTACCAGGTGCACAACGCCCCTCTTCACCCGGACGGAAACAGGGC
TTGCGGAAAGGGCGGTGCCGGTCGAGGCCGCGGGGGCGGTCGAGACATTT
TGTCGCTCGCAGGGGTAGGGGTGGGAGGGCGGCTAGGCGGAGGCGGCGGC
GGTGTAGGTGGGGGTGGTGGTAGAGGGGGCGGGGGTGGCGGGGGCGGCGG
GGGGGGAGGGAGCAGGAAGCGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig14003:1963..8087-

>mRNA_M-pyrifera_M_contig14003.6133.1 ID=mRNA_M-pyrifera_M_contig14003.6133.1|Name=mRNA_M-pyrifera_M_contig14003.6133.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2034bp|location=Sequence derived from alignment at M-pyrifera_M_contig14003:1963..8087- (Macrocystis pyrifera P11B4 male)
AAGGGTAAGAGCAAGGGCCGCTTCCGCCGCGGGGGAAAGGACGGCGAAGC
AGAAGAAGAAGACGACACCGACAACGGTCCCATCCTGCCCAGGCATCGCA
CGTGGGAGGAGGCTCAGGCCGCAGTGGATGAGGCGGACAGAAGGGTAAGA
GCAAGGGCCGCTTCCGCCGCGGGGGAAAGGACGGCGAAGCAGAAGAAGAA
GACGACACCGACAACGGTCCCATCCTGCCCAGGCATCGCACGTGGGAGGA
GGCTCAGGCCGCAGTGGATGAGGCGGACAGAGCCTGGGACGAAGACCACA
GGCGGCGGATGGCGAGGGTGGCAGAGCTGCAGGTGAGGCAGGGCAAGCAG
GCGGGAGACACTGGGGGGGAAGGGGGGACGGACGAAGAGGGGCAGGAGGA
TGACGAGGAGGAAGACGAGGAAGACGAGGACGACGACGACGGAGCGGGGT
CGGAGCCTGGGACGAAGACCACAGGCGGCGGATGGCGAGGGTGGCAGAGC
TGCAGGTGAGGCAGGGCAAGCAGGCGGGAGACACTGGGGGGGAAGGGGGG
ACGGACGAAGAGGGGCAGGAGGATGACGAGGAGGAAGACGAGGAAGACGA
GGACGACGACGACGGAGCGGGGTCGGGTTCCGAACAAGAGGATGGCGTCG
ACGGAGACGAGAAGGAGGTTCCGAACAAGAGGATGGCGTCGACGGAGACG
AGAAGGAGCAGGAGGAGGAGGAGGAGGAGGGAAGAGGCATGTCTGAGGGA
GGGGACGACGTCGTGCTGCACCCCCGGGGGGCAGTGGAGAAGACGGAGGA
AGACGAGGAGGCGGAAGACGAATTTGAGGCACTGCTGAGTAAGACCATGT
CAGAGAGCGTAGAGAGAACCAAGATCGCCAGGGCTACGACGCAGCAGGAG
GAGGAGGAGGAGGAGGGAAGAGGCATGTCTGAGGGAGGGGACGACGTCGT
GCTGCACCCCCGGGGGGCAGTGGAGAAGACGGAGGAAGACGAGGAGGCGG
AAGACGAATTTGAGGCACTGCTGAGTAAGACCATGTCAGAGAGCGTAGAG
AGAACCAAGATCGCCAGGGCTACGACGCAGGTATTGGGGCACATGGCGGT
GCCGATGGTGCTCAAGAACACTAACATCAAGGTGGCAACTCGACAATCGC
CGCTCACGGGTATTGGGGCACATGGCGGTGCCGATGGTGCTCAAGAACAC
TAACATCAAGGTGGCAACTCGACAATCGCCGCTCACGGGAGGTTCGGGCG
TAGCGTTCAAGCTGCTGAAGCGCGGCAACAAGGGCAAGATGGAAGCGCAG
GAGATGGTGGTGCCTGCTTCCACGTCGCTCGCAGCGCAAGTCAGCCGCAA
CGAGGAGGCCAGCCGAGAGGAGAGCTCCATCATCAAGGCCAGGGAGGTTC
GGGCGTAGCGTTCAAGCTGCTGAAGCGCGGCAACAAGGGCAAGATGGAAG
CGCAGGAGATGGTGGTGCCTGCTTCCACGTCGCTCGCAGCGCAAGTCAGC
CGCAACGAGGAGGCCAGCCGAGAGGAGAGCTCCATCATCAAGGCCAGGGT
GCTAGCGTACGAGGCGAACATCGAGGCGGCCGTGCTGGCGCAGGACTCCG
GGACGGTGCCGCCCCCGGAGGACTACACCCATTTCATCCCAAAGGTGCTA
GCGTACGAGGCGAACATCGAGGCGGCCGTGCTGGCGCAGGACTCCGGGAC
GGTGCCGCCCCCGGAGGACTACACCCATTTCATCCCAAAGGTGCACAACG
CCCCTCTTCACCCGGACGGAAACAGGGCTTGCGGAAAGGGCGGTGCCGGT
GCACAACGCCCCTCTTCACCCGGACGGAAACAGGGCTTGCGGAAAGGGCG
GTGCCGGCGGAGGCGGCGGCGGTGTAGGTGGGGGTGGTGGTAGAGGGGGC
GGGGGTGGCGGGGGCGGCGGGGGGGGAGGGAGCAGGAAGCGGTGAGCGGA
GGCGGCGGCGGTGTAGGTGGGGGTGGTGGTAGAGGGGGCGGGGGTGGCGG
GGGCGGCGGGGGGGGAGGGAGCAGGAAGCGGTGA
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