mRNA_M-pyrifera_M_contig13999.6130.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13999.6130.1
Unique NamemRNA_M-pyrifera_M_contig13999.6130.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13999.6130.1 vs. uniprot
Match: A0A6H5L5T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T5_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 1.050e-75
Identity = 243/460 (52.83%), Postives = 270/460 (58.70%), Query Frame = 1 
Query:  103 SWGVGDFVVLQAQTSKGMNKLGGVARVLSVCSDDTYLVKLSLGGAASTRVSADLLSSYTPPTVTASRARR----SARTVGGAKGMSQPDPSNGRIPASPLSPSSXXXXXXXXSPPSSVVPSPGRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPAG----------------------------ARLGDRARVLYDETDWYMGTVVALHRGGAVTVRFDDGSDPRVSLAEGDAETCPDHELVAPDLSAVEAKARXXXXXXXXXXXXXXXXXXXRSGGXXFGRDGRPGKGRSSVDGKRALGPGGRLLETGEGVLLTESRARALLETDPSRLVGLEYQEFHAGYGGWWKTFVTEIFNERIGGGEAGGDSGKKDGGARAGADAEALWPLFVMVGQ---GAHEKKDGEGGGXXXXXXXXXXXXEDADFVYKRKTSALLSRLRAWDKHREASWQA 1377
            SW  GD VVL+A+TSKGMNKLGGVARVL V  D TY VKLSLGG   TRV +DLL SYTP    A R RR    S R      G  + DPSNG +P+SP S SS        S   S     GRS +XXXXXXXXXXXXXXXXXXX                                                AR GDRARVLYD TDWYM TVV +HRG +VTVRFDDGS  RV+L+ GDAE C D  L AP  S       XXXXXXXXXXXXXXXX              RPG G  +V G RALG GGR+L  GEG  LTE RA+ALL+T P +LVGL YQE H GYGGWW+T VTE+  ER+G  ++GG    KDGG  A      +WP  V+VGQ      + K   G  XXXXXXXXXXXX + DFVY RKT +LLSRLR WDKHREA W+A
Sbjct:  582 SWSKGDLVVLKARTSKGMNKLGGVARVLEVFEDGTYFVKLSLGGKP-TRVGSDLLFSYTPSPEPAFRGRRRSTASRRRDTAEGGPREVDPSNGWVPSSPSSCSSSPSPKRTRSKDGS-----GRSVSXXXXXXXXXXXXXXXXXXXRRSLLRRGVKKNSGDGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARPGDRARVLYDNTDWYMATVVGVHRGSSVTVRFDDGSKARVTLSPGDAEICADDAL-APAASEPXXXXXXXXXXXXXXXXXXXXX--------------RPGSG-VAVKGVRALGAGGRVLGEGEGKALTEERAKALLDTAPQKLVGLVYQEHHRGYGGWWETVVTEVSEERMG--DSGGAGRDKDGGGNA------MWPESVVVGQMDRSGEKVKAKAGSAXXXXXXXXXXXXXEPDFVYTRKTRSLLSRLRTWDKHREAEWEA 1011
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BLAST of mRNA_M-pyrifera_M_contig13999.6130.1 vs. uniprot
Match: D8LSY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY7_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 4.650e-71
Identity = 254/465 (54.62%), Postives = 283/465 (60.86%), Query Frame = 1 
Query:  103 SWGVGDFVVLQAQTSKGMNKLGGVARVLSVCSDDTYLVKLSLGGAASTRVSADLLSSYTPPTVTASRARRSA-----RTVGGAKGMSQPDPSNGRIPASPLSPSSXXXXXXXX------SPPSSVVPSPGRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPP-------------------------AGARLGDRARVLYDETDWYMGTVVALHRGGAVTVRFDDGSDPRVSLAEGDAETCPDHELVAPDLSAVEAKARXXXXXXXXXXXXXXXXXXXRSGGXXFGRDGRPGKGRSSVDGKRALGPGGRLLETGEGVLLTESRARALLETDPSRLVGLEYQEFHAGYGGWWKTFVTEIFNERIGGGEAGGDSGKKDGGARAGADAEALWPLFVMVGQ----GAHEKKDGEGGGXXXXXXXXXXXXEDADFVYKRKTSALLSRLRAWDKHREASWQA 1377
            SW  GD VVL+A+TSKGMNKLGGVARVL V  D TY VKLSLGG   TRV +DLL SYTP    A R RR       R      G  + DP NG +P+SP + SS   XXXXX      +P    V S G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            A AR GDRARVLYD TDWYM TVV +HRG +VTVRFDDGS+ R++L+ GDAE C D  L AP  S   A   XXXXXXXXXXXXX                 RPG+G     G RALG GGR+L  GEG  LTE RA+ALL+T P +LVGL YQE H GYGGWW+T VTE+  ER+G  ++GG    +DG         A+WP  V+VGQ    G   K       XXXXXXXXXXXX + DFVY RKT  LLSRLR WDKHREA W+A
Sbjct:  546 SWSKGDLVVLKARTSKGMNKLGGVARVLEVFEDGTYFVKLSLGGKP-TRVGSDLLFSYTPSPEPAFRGRRKCTASRRRDTPEGGGGGERDPHNGGVPSSPSACSSPPSXXXXXKRTKSKNPRGPSVSSSGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAAMTKAAARPGDRARVLYDNTDWYMATVVGVHRGSSVTVRFDDGSEARLALSPGDAEICADDAL-APAASEPPAXXXXXXXXXXXXXXXXRR---------------RPGRG-VVAKGVRALGAGGRILGEGEGKALTEERAKALLDTAPEKLVGLVYQEHHRGYGGWWETVVTEVSEERMG--DSGGAGRDRDG------RGNAMWPESVVVGQIDRSGEKVKTKAGSXXXXXXXXXXXXXXXEPDFVYTRKTRWLLSRLRMWDKHREAEWEA 984
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13999.6130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5T5_9PHAE1.050e-7552.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSY7_ECTSI4.650e-7154.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13999contigM-pyrifera_M_contig13999:389..2311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001900.1
Exons2
Model size1413
Cds size1413
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815831.8255234-CDS-M-pyrifera_M_contig13999:388..15721622815831.8255234-CDS-M-pyrifera_M_contig13999:388..1572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13999 389..1572 -
1692277595.0253122-CDS-M-pyrifera_M_contig13999:388..15721692277595.0253122-CDS-M-pyrifera_M_contig13999:388..1572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13999 389..1572 -
1622815831.8385882-CDS-M-pyrifera_M_contig13999:2082..23111622815831.8385882-CDS-M-pyrifera_M_contig13999:2082..2311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13999 2083..2311 -
1692277595.0337725-CDS-M-pyrifera_M_contig13999:2082..23111692277595.0337725-CDS-M-pyrifera_M_contig13999:2082..2311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13999 2083..2311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13999.6130.1prot_M-pyrifera_M_contig13999.6130.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13999 389..2311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13999.6130.1

>prot_M-pyrifera_M_contig13999.6130.1 ID=prot_M-pyrifera_M_contig13999.6130.1|Name=mRNA_M-pyrifera_M_contig13999.6130.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=471bp
DKGEGEERAAGSVKGDGRDGERSSAAAAATGTGASWGVGDFVVLQAQTSK
GMNKLGGVARVLSVCSDDTYLVKLSLGGAASTRVSADLLSSYTPPTVTAS
RARRSARTVGGAKGMSQPDPSNGRIPASPLSPSSSSSSSVSSSPPSSVVP
SPGRSPAPARSATTRTRTPTRKASGDGGGGATPKAKATATAAPPAGARLG
DRARVLYDETDWYMGTVVALHRGGAVTVRFDDGSDPRVSLAEGDAETCPD
HELVAPDLSAVEAKARGRSGAGARASPSRSRGGGSRSGGGGFGRDGRPGK
GRSSVDGKRALGPGGRLLETGEGVLLTESRARALLETDPSRLVGLEYQEF
HAGYGGWWKTFVTEIFNERIGGGEAGGDSGKKDGGARAGADAEALWPLFV
MVGQGAHEKKDGEGGGEKGEGSQGSESSEDADFVYKRKTSALLSRLRAWD
KHREASWQAAAAAAAAAAATP
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mRNA from alignment at M-pyrifera_M_contig13999:389..2311-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13999.6130.1 ID=mRNA_M-pyrifera_M_contig13999.6130.1|Name=mRNA_M-pyrifera_M_contig13999.6130.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at M-pyrifera_M_contig13999:389..2311- (Macrocystis pyrifera P11B4 male)
GATAAGGGCGAGGGCGAGGAAAGGGCCGCGGGCAGCGTTAAGGGCGACGG
CAGGGATGGGGAGCGCTCGAGCGCTGCCGCCGCCGCTACCGGGACCGGCG
CCTCGTGGGGTGTGGGCGATTTCGTGGTGCTGCAGGCGCAGACGTCGAAG
GGGATGAACAAGCTCGGTGGTGTGGCGCGGGTGCTCTCCGTGTGCTCGGA
CGACACCTATCTCGTCAAGCTCAGCCTCGGTGAGTGGTACCCTTTTCTCC
TGTTCGCGGCGGTTTGGCAGAGGCAGCGATTGCAACGGTGCTGGTGGCGG
TGAAGGCGAAGGTGGTAGTGGTGACGGTGGCGGCGGCTGTAGCCGGGAGC
TTTTTTTTCTTCTTTTTTTTTTTCTCCCTGAAAACCGTACACCAGTACCG
CAGACGAGATGAAGCCGGCTGGCTGATACAGAGAGCAGCGCGCGCGTCCA
TGATACAAAGCAGGACCCCGACCCTGATGGAATCCTGTCAAGTATTTTCT
ACTGCTGTAGTGCATTTGACATATACTGGTATGGTGCGACGCACCTGTTT
AAGTGAAGTCCCAACCTGCCCCCCCCCCCACTCCCACAAGCCAAGCACCG
CTTTGTTTATTACACTTGGACGGACTATTAATAGCCCTTTCCCCCAAACG
CTCGCCCGCGTAGTTGACTCCCGCCTTCACTCCCTCCCCCCCTCCCCGCG
CTTCAATGTCGACTCCATGAATGCAAACATTCGGCACAGGCGGAGCGGCT
TCGACACGCGTATCGGCCGACCTCCTGTCCAGCTACACCCCGCCTACTGT
CACGGCATCCCGGGCGAGGAGGTCCGCGCGGACGGTCGGCGGCGCTAAAG
GGATGTCGCAACCCGACCCTAGCAACGGACGGATACCGGCCTCTCCCCTG
TCCCCCTCTTCGTCTTCCTCTTCTTCGGTTTCCTCTTCTCCTCCCTCTAG
CGTCGTTCCTTCTCCGGGTCGATCCCCTGCCCCTGCCCGCAGTGCTACTA
CCCGTACCCGTACCCCTACCCGCAAGGCGAGCGGCGATGGCGGCGGCGGC
GCTACCCCTAAGGCTAAGGCTACGGCTACCGCCGCTCCGCCAGCCGGGGC
TCGGCTCGGCGACCGCGCCAGGGTGCTCTACGACGAAACGGACTGGTACA
TGGGCACCGTTGTCGCGCTGCACCGCGGCGGCGCGGTCACCGTCCGCTTC
GACGACGGCAGCGACCCGCGCGTGTCCCTGGCGGAGGGGGACGCCGAGAC
GTGCCCCGACCACGAGCTCGTCGCACCCGACTTGTCGGCGGTGGAGGCAA
AGGCGCGGGGGCGGTCGGGGGCGGGAGCGAGGGCGTCCCCTTCCCGCTCT
CGCGGGGGCGGTAGCCGTAGCGGTGGTGGCGGCTTCGGGAGAGATGGCAG
ACCGGGCAAGGGTCGCTCCAGTGTAGACGGCAAGCGGGCGTTAGGGCCCG
GGGGGCGGCTTCTCGAGACGGGTGAAGGCGTTTTGCTGACGGAGAGCCGC
GCGAGGGCTCTGCTGGAGACCGACCCGAGTAGGTTAGTCGGCCTGGAGTA
CCAGGAGTTTCACGCGGGCTACGGCGGGTGGTGGAAGACTTTCGTGACGG
AGATTTTTAACGAGCGTATCGGCGGTGGTGAGGCGGGGGGGGACAGCGGC
AAAAAGGATGGGGGCGCGCGTGCGGGAGCGGACGCTGAAGCGCTGTGGCC
GCTGTTTGTGATGGTGGGGCAGGGGGCTCACGAGAAAAAGGACGGGGAGG
GGGGAGGGGAGAAAGGAGAGGGGAGCCAGGGAAGCGAAAGCAGCGAGGAT
GCCGATTTCGTCTACAAGCGGAAGACGAGCGCCCTGCTCTCTCGCCTTCG
AGCCTGGGATAAACACCGAGAGGCCTCGTGGCAGGCGGCGGCCGCTGCTG
CCGCCGCCGCCGCTGCAACACCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13999:389..2311-

>mRNA_M-pyrifera_M_contig13999.6130.1 ID=mRNA_M-pyrifera_M_contig13999.6130.1|Name=mRNA_M-pyrifera_M_contig13999.6130.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2826bp|location=Sequence derived from alignment at M-pyrifera_M_contig13999:389..2311- (Macrocystis pyrifera P11B4 male)
GATAAGGGCGAGGGCGAGGAAAGGGCCGCGGGCAGCGTTAAGGGCGACGG
CAGGGATGGGGAGCGCTCGAGCGCTGCCGCCGCCGCTACCGGGACCGGCG
CCTCGTGGGGTGTGGGCGATTTCGTGGTGCTGCAGGCGCAGACGTCGAAG
GGGATGAACAAGCTCGGTGGTGTGGCGCGGGTGCTCTCCGTGTGCTCGGA
CGACACCTATCTCGTCAAGCTCAGCCTCGGATAAGGGCGAGGGCGAGGAA
AGGGCCGCGGGCAGCGTTAAGGGCGACGGCAGGGATGGGGAGCGCTCGAG
CGCTGCCGCCGCCGCTACCGGGACCGGCGCCTCGTGGGGTGTGGGCGATT
TCGTGGTGCTGCAGGCGCAGACGTCGAAGGGGATGAACAAGCTCGGTGGT
GTGGCGCGGGTGCTCTCCGTGTGCTCGGACGACACCTATCTCGTCAAGCT
CAGCCTCGGCGGAGCGGCTTCGACACGCGTATCGGCCGACCTCCTGTCCA
GCTACACCCCGCCTACTGTCACGGCATCCCGGGCGAGGAGGTCCGCGCGG
ACGGTCGGCGGCGCTAAAGGGATGTCGCAACCCGACCCTAGCAACGGACG
GATACCGGCCTCTCCCCTGTCCCCCTCTTCGTCTTCCTCTTCTTCGGTTT
CCTCTTCTCCTCCCTCTAGCGTCGTTCCTTCTCCGGGTCGATCCCCTGCC
CCTGCCCGCAGTGCTACTACCCGTACCCGTACCCCTACCCGCAAGGCGAG
CGGCGATGGCGGCGGCGGCGCTACCCCTAAGGCTAAGGCTACGGCTACCG
CCGCTCCGCCAGCCGGGGCTCGGCTCGGCGACCGCGCCAGGGTGCTCTAC
GACGAAACGGACTGGTACATGGGCACCGTTGTCGCGCTGCACCGCGGCGG
CGCGGTCACCGTCCGCTTCGACGACGGCAGCGACCCGCGCGTGTCCCTGG
CGGAGGGGGACGCCGAGACGTGCCCCGACCACGAGCTCGTCGCACCCGAC
TTGTCGGCGGTGGAGGCAAAGGCGCGGGGGCGGTCGGGGGCGGGAGCGAG
GGCGTCCCCTTCCCGCTCTCGCGGGGGCGGTAGCCGTAGCGGTGGTGGCG
GCTTCGGGAGAGATGGCAGACCGGGCAAGGGTCGCTCCAGTGTAGACGGC
AAGCGGGCGTTAGGGCCCGGGGGGCGGCTTCTCGAGACGGGTGAAGGCGT
TTTGCTGACGGAGAGCCGCGCGAGGGCTCTGCTGGAGACCGACCCGAGTA
GGTTAGTCGGCCTGGAGTACCAGGAGTTTCACGCGGGCTACGGCGGGTGG
TGGAAGACTTTCGTGACGGAGATTTTTAACGAGCGTATCGGCGGTGGTGA
GGCGGGGGGGGACAGCGGCAAAAAGGATGGGGGCGCGCGTGCGGGAGCGG
ACGCTGAAGCGCTGTGGCCGCTGTTTGTGATGGTGGGGCAGGGGGCTCAC
GAGAAAAAGGACGGGGAGGGGGGAGGGGAGAAAGGAGAGGGGAGCCAGGG
AAGCGAAAGCAGCGAGGATGCCGATTTCGTCTACAAGCGGAAGACGAGCG
CCCTGCTCTCTCGCCTTCGAGCCTGGGATAAACACCGAGAGGCCTCGTGG
CAGGCGGCGGCCGCTGCTGCCGCCGCCGCCGCTGCAACACCCGCGGAGCG
GCTTCGACACGCGTATCGGCCGACCTCCTGTCCAGCTACACCCCGCCTAC
TGTCACGGCATCCCGGGCGAGGAGGTCCGCGCGGACGGTCGGCGGCGCTA
AAGGGATGTCGCAACCCGACCCTAGCAACGGACGGATACCGGCCTCTCCC
CTGTCCCCCTCTTCGTCTTCCTCTTCTTCGGTTTCCTCTTCTCCTCCCTC
TAGCGTCGTTCCTTCTCCGGGTCGATCCCCTGCCCCTGCCCGCAGTGCTA
CTACCCGTACCCGTACCCCTACCCGCAAGGCGAGCGGCGATGGCGGCGGC
GGCGCTACCCCTAAGGCTAAGGCTACGGCTACCGCCGCTCCGCCAGCCGG
GGCTCGGCTCGGCGACCGCGCCAGGGTGCTCTACGACGAAACGGACTGGT
ACATGGGCACCGTTGTCGCGCTGCACCGCGGCGGCGCGGTCACCGTCCGC
TTCGACGACGGCAGCGACCCGCGCGTGTCCCTGGCGGAGGGGGACGCCGA
GACGTGCCCCGACCACGAGCTCGTCGCACCCGACTTGTCGGCGGTGGAGG
CAAAGGCGCGGGGGCGGTCGGGGGCGGGAGCGAGGGCGTCCCCTTCCCGC
TCTCGCGGGGGCGGTAGCCGTAGCGGTGGTGGCGGCTTCGGGAGAGATGG
CAGACCGGGCAAGGGTCGCTCCAGTGTAGACGGCAAGCGGGCGTTAGGGC
CCGGGGGGCGGCTTCTCGAGACGGGTGAAGGCGTTTTGCTGACGGAGAGC
CGCGCGAGGGCTCTGCTGGAGACCGACCCGAGTAGGTTAGTCGGCCTGGA
GTACCAGGAGTTTCACGCGGGCTACGGCGGGTGGTGGAAGACTTTCGTGA
CGGAGATTTTTAACGAGCGTATCGGCGGTGGTGAGGCGGGGGGGGACAGC
GGCAAAAAGGATGGGGGCGCGCGTGCGGGAGCGGACGCTGAAGCGCTGTG
GCCGCTGTTTGTGATGGTGGGGCAGGGGGCTCACGAGAAAAAGGACGGGG
AGGGGGGAGGGGAGAAAGGAGAGGGGAGCCAGGGAAGCGAAAGCAGCGAG
GATGCCGATTTCGTCTACAAGCGGAAGACGAGCGCCCTGCTCTCTCGCCT
TCGAGCCTGGGATAAACACCGAGAGGCCTCGTGGCAGGCGGCGGCCGCTG
CTGCCGCCGCCGCCGCTGCAACACCC
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