mRNA_M-pyrifera_M_contig13969.6125.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13969.6125.1
Unique NamemRNA_M-pyrifera_M_contig13969.6125.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13969.6125.1 vs. uniprot
Match: UPI00077D09EE (zinc finger BED domain-containing protein 1-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077D09EE)

HSP 1 Score: 83.6 bits (205), Expect = 3.820e-18
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 PLMWWKQTEEMYPTLAQMARKYLAIPASSAASERLFSVAGNTITEKRASLTDENAENLIFLHSN 192
            PL WWK     +PTLA +A+ YLA+PA+ A SERLFSVAGN +T+KRASLT E+ E L FLH+N
Sbjct:  164 PLTWWKNNATRFPTLATLAKSYLAVPATWAPSERLFSVAGNIVTKKRASLTAEHVETLTFLHTN 227          
BLAST of mRNA_M-pyrifera_M_contig13969.6125.1 vs. uniprot
Match: A0A8B8G1F8_9HEMI (zinc finger BED domain-containing protein 1-like n=4 Tax=Aphididae TaxID=27482 RepID=A0A8B8G1F8_9HEMI)

HSP 1 Score: 80.9 bits (198), Expect = 7.230e-18
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 PLMWWKQTEEMYPTLAQMARKYLAIPASSAASERLFSVAGNTITEKRASLTDENAENLIFLHSNQHLW 204
            PL WW+  EE YP +A +A+KYLAIP++SA+SER FS AGN +T KR+ L  EN + L+FL+ N+ L+
Sbjct:   77 PLEWWRTREEKYPAIATIAKKYLAIPSTSASSERCFSTAGNIVTPKRSCLLPENVDMLVFLYQNRKLY 144          
BLAST of mRNA_M-pyrifera_M_contig13969.6125.1 vs. uniprot
Match: A0A669CH32_ORENI (BED-type domain-containing protein n=4 Tax=Ovalentaria TaxID=1489908 RepID=A0A669CH32_ORENI)

HSP 1 Score: 85.5 bits (210), Expect = 7.260e-18
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 PLMWWKQTEEMYPTLAQMARKYLAIPASSAASERLFSVAGNTITEKRASLTDENAENLIFLHSN 192
            PL WWK     +PTLA +A+ YLA+PA+S  SERLFSVAGN +T+KRASLT E+ E L FLHSN
Sbjct:  563 PLTWWKNNATRFPTLANLAKSYLAVPATSTPSERLFSVAGNIVTKKRASLTAEHVEMLTFLHSN 626          
BLAST of mRNA_M-pyrifera_M_contig13969.6125.1 vs. uniprot
Match: A0A1A8UYZ5_NOTFU (Uncharacterized protein (Fragment) n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A8UYZ5_NOTFU)

HSP 1 Score: 84.0 bits (206), Expect = 2.220e-17
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 PLMWWKQTEEMYPTLAQMARKYLAIPASSAASERLFSVAGNTITEKRASLTDENAENLIFLHSN 192
            PL WWK     +PTLA +A+ YLA+PA+S  SERLFSVAGN +T+KRASLT E+ E L FLH+N
Sbjct:  388 PLTWWKNNATRFPTLATLAKSYLAVPATSTPSERLFSVAGNIVTKKRASLTAEHVEMLTFLHTN 451          
BLAST of mRNA_M-pyrifera_M_contig13969.6125.1 vs. uniprot
Match: A0A0F8D3X4_LARCR (Zinc finger BED domain-containing protein 1 n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8D3X4_LARCR)

HSP 1 Score: 77.8 bits (190), Expect = 2.380e-17
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 PLMWWKQTEEMYPTLAQMARKYLAIPASSAASERLFSVAGNTITEKRASLTDENAENLIFLHSNQ 195
            PL WW Q E+ +P LA++ + YLA+PA+S  SER+FS+ GNTIT +RASL   + + L+FLH+NQ
Sbjct:    4 PLHWWAQNEDRFPRLAKLCKHYLAVPATSTPSERIFSLTGNTITRQRASLHPAHVDVLVFLHANQ 68          
BLAST of mRNA_M-pyrifera_M_contig13969.6125.1 vs. uniprot
Match: UPI001C05103D (zinc finger BED domain-containing protein 4-like n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C05103D)

HSP 1 Score: 79.3 bits (194), Expect = 7.300e-17
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 PLMWWKQTEEMYPTLAQMARKYLAIPASSAASERLFSVAGNTITEKRASLTDENAENLIFLHSNQ 195
            PL WW Q  + +P LA++ ++YLA+PA+S  SER+FS+AGNTIT +RASL   + + L+FLH+NQ
Sbjct:  107 PLQWWAQNVDRFPRLAKLCKRYLAVPATSTPSERIFSLAGNTITRQRASLHQAHVDALVFLHANQ 171          
BLAST of mRNA_M-pyrifera_M_contig13969.6125.1 vs. uniprot
Match: UPI000B937505 (zinc finger BED domain-containing protein 1-like n=2 Tax=Aphidinae TaxID=133076 RepID=UPI000B937505)

HSP 1 Score: 78.2 bits (191), Expect = 9.260e-17
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 PLMWWKQTEEMYPTLAQMARKYLAIPASSAASERLFSVAGNTITEKRASLTDENAENLIFLHSNQHL 201
            P  WWK     YP +  +A+KYL IPA+S +SER FS AGN +T KRASL+ EN   L+FLH N++L
Sbjct:   59 PKEWWKTRFSKYPVIGDLAKKYLTIPATSVSSERCFSTAGNIVTRKRASLSPENVNMLVFLHQNKYL 125          
BLAST of mRNA_M-pyrifera_M_contig13969.6125.1 vs. uniprot
Match: UPI001939731D (zinc finger BED domain-containing protein 4-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939731D)

HSP 1 Score: 81.6 bits (200), Expect = 1.130e-16
Identity = 36/68 (52.94%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 PLMWWKQTEEMYPTLAQMARKYLAIPASSAASERLFSVAGNTITEKRASLTDENAENLIFLHSNQHLW 204
            PL+WWK+ E ++P L ++ ++YL IPA+S  SER+FSVAGNT TE ++SLT  + E L+FL +N++LW
Sbjct:  308 PLIWWKENENLFPNLVKLVQEYLGIPATSMPSERVFSVAGNTATELKSSLTGFHVEALVFLKANKNLW 375          
BLAST of mRNA_M-pyrifera_M_contig13969.6125.1 vs. uniprot
Match: A0A6P8TVQ2_GYMAC (zinc finger BED domain-containing protein 1-like n=2 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8TVQ2_GYMAC)

HSP 1 Score: 82.0 bits (201), Expect = 1.200e-16
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 PLMWWKQTEEMYPTLAQMARKYLAIPASSAASERLFSVAGNTITEKRASLTDENAENLIFLHSN 192
            PL WWK+ E  +P+LA +AR YLA PA+S  SERLFS AGN +++KRASLT E+ + L FLHSN
Sbjct:  540 PLQWWKENETKFPSLAVVARSYLAAPATSTPSERLFSAAGNIVSKKRASLTKEHVDMLTFLHSN 603          
BLAST of mRNA_M-pyrifera_M_contig13969.6125.1 vs. uniprot
Match: E2BS40_HARSA (Zinc finger BED domain-containing protein 1 (Fragment) n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BS40_HARSA)

HSP 1 Score: 74.3 bits (181), Expect = 4.080e-16
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 PLMWWKQTEEMYPTLAQMARKYLAIPASSAASERLFSVAGNTITEKRASLTDENAENLIFLHSNQHLW 204
            PL WWK  E +YP +A + + YLAI ASSA+SER+FS AGN +T KR  L+ EN   LIFL+ N+ L+
Sbjct:    2 PLKWWKAHENLYPMIAALTKVYLAILASSASSERVFSTAGNIVTAKRNCLSTENVNLLIFLNKNKSLF 69          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13969.6125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00077D09EE3.820e-1862.50zinc finger BED domain-containing protein 1-like n... [more]
A0A8B8G1F8_9HEMI7.230e-1854.41zinc finger BED domain-containing protein 1-like n... [more]
A0A669CH32_ORENI7.260e-1864.06BED-type domain-containing protein n=4 Tax=Ovalent... [more]
A0A1A8UYZ5_NOTFU2.220e-1762.50Uncharacterized protein (Fragment) n=1 Tax=Nothobr... [more]
A0A0F8D3X4_LARCR2.380e-1753.85Zinc finger BED domain-containing protein 1 n=1 Ta... [more]
UPI001C05103D7.300e-1753.85zinc finger BED domain-containing protein 4-like n... [more]
UPI000B9375059.260e-1753.73zinc finger BED domain-containing protein 1-like n... [more]
UPI001939731D1.130e-1652.94zinc finger BED domain-containing protein 4-like n... [more]
A0A6P8TVQ2_GYMAC1.200e-1660.94zinc finger BED domain-containing protein 1-like n... [more]
E2BS40_HARSA4.080e-1654.41Zinc finger BED domain-containing protein 1 (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13969contigM-pyrifera_M_contig13969:4293..4496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.9
Seed ortholog evalue8e-12
Seed eggNOG ortholog7029.ACYPI072262-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc finger BED domain-containing protein
EggNOG OGs39SKR@33154,3BBS9@33208,3CUF3@33213,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size198
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815831.4971626-UTR-M-pyrifera_M_contig13969:4292..42981622815831.4971626-UTR-M-pyrifera_M_contig13969:4292..4298Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13969 4293..4298 +
1692277594.819234-UTR-M-pyrifera_M_contig13969:4292..42981692277594.819234-UTR-M-pyrifera_M_contig13969:4292..4298Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13969 4293..4298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815831.5150676-CDS-M-pyrifera_M_contig13969:4298..44961622815831.5150676-CDS-M-pyrifera_M_contig13969:4298..4496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13969 4299..4496 +
1692277594.829025-CDS-M-pyrifera_M_contig13969:4298..44961692277594.829025-CDS-M-pyrifera_M_contig13969:4298..4496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13969 4299..4496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13969.6125.1prot_M-pyrifera_M_contig13969.6125.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13969 4299..4496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13969.6125.1

>prot_M-pyrifera_M_contig13969.6125.1 ID=prot_M-pyrifera_M_contig13969.6125.1|Name=mRNA_M-pyrifera_M_contig13969.6125.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MWWKQTEEMYPTLAQMARKYLAIPASSAASERLFSVAGNTITEKRASLTD
ENAENLIFLHSNQHLW
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mRNA from alignment at M-pyrifera_M_contig13969:4293..4496+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13969.6125.1 ID=mRNA_M-pyrifera_M_contig13969.6125.1|Name=mRNA_M-pyrifera_M_contig13969.6125.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig13969:4293..4496+ (Macrocystis pyrifera P11B4 male)
CCACTCATGTGGTGGAAGCAGACGGAGGAGATGTATCCTACTTTGGCGCA GATGGCGAGGAAGTACCTAGCTATCCCGGCTTCCTCAGCAGCTTCGGAGC GCCTTTTCTCGGTGGCAGGGAACACCATAACCGAGAAACGTGCAAGTCTG ACAGACGAGAACGCCGAAAATCTAATTTTCCTGCACTCTAACCAGCACCT GTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13969:4293..4496+

>mRNA_M-pyrifera_M_contig13969.6125.1 ID=mRNA_M-pyrifera_M_contig13969.6125.1|Name=mRNA_M-pyrifera_M_contig13969.6125.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig13969:4293..4496+ (Macrocystis pyrifera P11B4 male)
ATGTGGTGGAAGCAGACGGAGGAGATGTATCCTACTTTGGCGCAGATGGC
GAGGAAGTACCTAGCTATCCCGGCTTCCTCAGCAGCTTCGGAGCGCCTTT
TCTCGGTGGCAGGGAACACCATAACCGAGAAACGTGCAAGTCTGACAGAC
GAGAACGCCGAAAATCTAATTTTCCTGCACTCTAACCAGCACCTGTGGAT
GTGGTGGAAGCAGACGGAGGAGATGTATCCTACTTTGGCGCAGATGGCGA
GGAAGTACCTAGCTATCCCGGCTTCCTCAGCAGCTTCGGAGCGCCTTTTC
TCGGTGGCAGGGAACACCATAACCGAGAAACGTGCAAGTCTGACAGACGA
GAACGCCGAAAATCTAATTTTCCTGCACTCTAACCAGCACCTGTGG
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