mRNA_M-pyrifera_M_contig13969.6124.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13969.6124.1
Unique NamemRNA_M-pyrifera_M_contig13969.6124.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13969.6124.1 vs. uniprot
Match: UPI00177AFCD9 (zinc finger BED domain-containing protein 1-like n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI00177AFCD9)

HSP 1 Score: 67.4 bits (163), Expect = 1.200e-10
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = 1
Query:   25 SNFQCPGVKTMVECVAQKAREVHDLVAIKLLGQDVAL--TGDGWESRSGQSFYSLTAHV---GDPNTYELERHTLACRAMHDRHTGVNVCNLNQELLKEFGVRNGRITSFTSDTAANQKKAVR 378
            SN++ P  KT+   +      V   V  + L +  A+  T DGW SR+G SF+S+TAH     D  T+ L    LAC +  DRHT  N+     E+  E+GV N +I    SD AAN K AVR
Sbjct:  151 SNYKLPTRKTVSSSLIPAMYNVTMEVVKRRLERAYAICVTMDGWTSRAGDSFFSVTAHYIVEEDKKTF-LASDLLACSSYLDRHTSENITKKINEIFCEWGVSN-KICVIVSDNAANMKAAVR 271          
BLAST of mRNA_M-pyrifera_M_contig13969.6124.1 vs. uniprot
Match: UPI001EE59B2A (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE59B2A)

HSP 1 Score: 62.0 bits (149), Expect = 1.410e-8
Identity = 32/101 (31.68%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  127 VALTGDGWESRSGQSFYSLTAHVGDPNTYELERHTLACRAMHDRHTGVNVCNLNQELLKEFGVRNGRITSFTSDTAANQKKAVRLMG-VPFIACACHVLEL 426
            +A+T DGW SRS +S+ ++TAH  + + ++LE   L  R +H+ HTG N+ N+ +  + E+ +      + ++D A+N   AV+     P I C  H + +
Sbjct:  194 MAVTTDGWTSRSTESYITITAHYVNED-WQLENPVLQTRTLHESHTGANLANVLESAVDEWNLGKFSQIAISTDNASNIVSAVKQSRFAPHIRCFAHTINI 293          
BLAST of mRNA_M-pyrifera_M_contig13969.6124.1 vs. uniprot
Match: A0A1X6P5T6_PORUM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5T6_PORUM)

HSP 1 Score: 62.4 bits (150), Expect = 1.440e-8
Identity = 35/99 (35.35%), Postives = 50/99 (50.51%), Query Frame = 1
Query:  133 LTGDGWESRSGQSFY-SLTAHVGDPNTYELERHTLACRAMHDRHTGVNVCNLNQELLKEFGVRNGRITSFTSDTAANQKKAVRLMGVPFIACACHVLEL 426
            L  D W  R G   Y SL     DP T+ +    L   A   RH   N+ +  + LL+ +GVRN  ++S TSD+ +N KKA+  +   ++ CA H L L
Sbjct:  444 LVTDLWTERHGSGSYGSLVLRCVDPGTFSIVELHLGVAAFIGRHDHDNIRSWTERLLRRYGVRNEDVSSSTSDSGSNVKKALTQLWPRWVPCAAHTLHL 542          
BLAST of mRNA_M-pyrifera_M_contig13969.6124.1 vs. uniprot
Match: A0A1X6P1B6_PORUM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1B6_PORUM)

HSP 1 Score: 61.6 bits (148), Expect = 2.620e-8
Identity = 33/96 (34.38%), Postives = 50/96 (52.08%), Query Frame = 1
Query:  142 DGWESRSGQSFY-SLTAHVGDPNTYELERHTLACRAMHDRHTGVNVCNLNQELLKEFGVRNGRITSFTSDTAANQKKAVRLMGVPFIACACHVLEL 426
            D W  R G   Y SL     DP T+ +    L   A++ RH   N+ +  + LL+ +GVR   ++S TSD+ +N KKA+  +   ++ CA H L L
Sbjct:  307 DLWTERHGSGSYGSLVLRCVDPGTFSIVELHLGVAALNGRHDHGNIRSWTERLLRRYGVRTEDVSSSTSDSGSNVKKALTQLWPRWVPCAAHTLHL 402          
BLAST of mRNA_M-pyrifera_M_contig13969.6124.1 vs. uniprot
Match: A0A8J2HHQ4_COTCN (Similar to ZBED4: Zinc finger BED domain-containing protein 4 (Homo sapiens) n=1 Tax=Cotesia congregata TaxID=51543 RepID=A0A8J2HHQ4_COTCN)

HSP 1 Score: 60.8 bits (146), Expect = 3.680e-8
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   37 CPGVKTMVECVAQKAR-EVHDLVAIKLLGQDVALTGDGWESRSGQSFYSLTAHVGDPNTYELERHTLACRAMHDRHTGVNVCNLNQELLKEFG---VRNGRITSFTSDTAANQKKAVRLMGVPFIACACHVLEL 426
            CP    + E + QK   E+ + +A  L+   ++ T DGW+SRSG  + SLT H    + +EL+   +    + DRHTG N+    +E+L E+    V N  I  FT+D  AN   A+R  G   I C  H+L+L
Sbjct:  164 CPN---LYEQIKQKLMDELQNDIASGLMS--LSFTTDGWKSRSGHHYLSLTVHYMTVD-FELKNIMIGLTQLEDRHTGSNIKAKLEEMLLEWNLLDVPNVPIY-FTTDNGANICNAIRKGGWNHIYCFAHMLQL 290          
BLAST of mRNA_M-pyrifera_M_contig13969.6124.1 vs. uniprot
Match: UPI0010F96B5A (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Osmia TaxID=124287 RepID=UPI0010F96B5A)

HSP 1 Score: 60.5 bits (145), Expect = 6.330e-8
Identity = 39/135 (28.89%), Postives = 72/135 (53.33%), Query Frame = 1
Query:   31 FQCPGVKTMVECVAQKAREVHDLVAIKL-LGQDVALTGDGWESRSGQSFYSLTAHVGDPNTYELERHTLACRAMHDRHTGVNVCNLNQELLKEFGVRNGRITSFTSDTAANQKKAVR-LMGVPF-IACACHVLEL 426
            + CP  ++++  +     E    +  +L +  D+A+T DGW S+S  S+ S+ A   D + + ++ +TL  + M D +T  N+ ++   ++KE    + ++ S   D A N  KA   L+GV + I+CA H L+L
Sbjct:  133 YHCPSPESIMHRLQLLYNEKRMKIEEELSMASDIAITSDGWSSKSQDSYISMAAQFID-DKWIIKNYTLCTQPMEDHYTDENLTSMFN-IIKEEWHLSSKVNSLVHDNAYNVSKAANSLIGVRYNISCAAHTLQL 265          
BLAST of mRNA_M-pyrifera_M_contig13969.6124.1 vs. uniprot
Match: UPI000B92F94B (zinc finger BED domain-containing protein 1-like isoform X1 n=2 Tax=Myzus persicae TaxID=13164 RepID=UPI000B92F94B)

HSP 1 Score: 58.9 bits (141), Expect = 2.150e-7
Identity = 33/111 (29.73%), Postives = 58/111 (52.25%), Query Frame = 1
Query:   91 HDLVAIKLLGQDVALTGDGWESRSGQSFYSLTAHVGDPNTYELERHTLACRAMHDRHTGVNVCNLNQELLKEFGVRNGRITSFTSDTAANQKKAVRLMGVPFIACACHVLE 423
            H +  I    + V+LT D W S +  SF ++T H  D +   L+ + L  R +   HT   +  +  +++KE+ + + +I +  +D+ AN K A+RL+G+  I C  H L 
Sbjct:   76 HKIETILSQAKYVSLTSDVWTSLNTISFITVTVHFFDIDL-NLKTYVLTTRKLESNHTAQYLSEVLTDVIKEWNIED-KIVAIVTDSGANIKAAIRLLGLNHIPCVAHKLN 184          
BLAST of mRNA_M-pyrifera_M_contig13969.6124.1 vs. uniprot
Match: UPI001EE5E460 (zinc finger BED domain-containing protein 4-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5E460)

HSP 1 Score: 58.2 bits (139), Expect = 3.400e-7
Identity = 31/101 (30.69%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  127 VALTGDGWESRSGQSFYSLTAHVGDPNTYELERHTLACRAMHDRHTGVNVCNLNQELLKEFGVRNGRITSFTSDTAANQKKAVRLMG-VPFIACACHVLEL 426
            +A+T DGW SRS +S+ ++TAH  + + ++LE   L  R + + HTG N+ N+    + E+ +      + ++D A+N   AV+     P I C  H + +
Sbjct:  129 MAVTTDGWTSRSTESYITITAHYVNED-WQLENPVLQTRTLQESHTGANLANVLDSAVDEWNLGKFSQIAISTDNASNIVSAVKQSRFAPHIRCFAHTINI 228          
BLAST of mRNA_M-pyrifera_M_contig13969.6124.1 vs. uniprot
Match: UPI001E1DEB19 (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEB19)

HSP 1 Score: 57.0 bits (136), Expect = 1.040e-6
Identity = 31/104 (29.81%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  115 LGQDVALTGDGWESRSGQSFYSLTAHVGDPNTYELERHTLACRAMHDRHTGVNVCNLNQELLKEFGVRNGRITSFTSDTAANQKKAVRLMGVPFIACACHVLEL 426
            +G  +A+T DGW S + +S+ ++TAH  + N +EL    L    +   HTG ++    +E++ ++ +    + +  +D AAN++KA++L+G     C  H L L
Sbjct:  181 VGGHLAITHDGWTSCATESYDTVTAHFINSN-WELRSAVLQTTKVEGSHTGEHIAERLKEMVSDWNIP---VPTVVTDNAANERKAIQLLGWERFGCYGHRLNL 280          
BLAST of mRNA_M-pyrifera_M_contig13969.6124.1 vs. uniprot
Match: A0A2B4RF51_STYPI (Zinc finger BED domain-containing protein 1 n=3 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RF51_STYPI)

HSP 1 Score: 56.2 bits (134), Expect = 1.920e-6
Identity = 43/142 (30.28%), Postives = 67/142 (47.18%), Query Frame = 1
Query:    7 YGLTGKSNFQCPGVKTMVECVAQKAREVHDLVAIKLLGQDVALTGDGWESRSGQSFYSLTAHVGDPNTYELERHTLACRAMHDRHTGVNVCNLNQELLKEFGV-RNGRITSFTSDTAANQKKAVRLMGV-PFIACACHVLEL 426
            Y L  + +F    +  + E V  KA    DL + +     VALT DGW SRS +S+ ++TAH      + ++ + L  R M   HT  N+ N+    + E+   R  +  S TSD A+N   A +   + P + C  H + L
Sbjct:  151 YDLPSRVHFSEKVIPKLYEEV--KAEVESDLKSAEF----VALTSDGWTSRSTESYITVTAHF--IQEWNIKNYVLQTRRMDVSHTSENLSNILTSAISEWNXQRYEQNPSLTSDNASNIVNAAKQAELSPHVGCVAHTINL 284          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13969.6124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
UPI00177AFCD91.200e-1039.02zinc finger BED domain-containing protein 1-like n... [more]
UPI001EE59B2A1.410e-831.68E3 SUMO-protein ligase ZBED1-like n=1 Tax=Haliotis... [more]
A0A1X6P5T6_PORUM1.440e-835.35Dimer_Tnp_hAT domain-containing protein n=1 Tax=Po... [more]
A0A1X6P1B6_PORUM2.620e-834.38Dimer_Tnp_hAT domain-containing protein n=1 Tax=Po... [more]
A0A8J2HHQ4_COTCN3.680e-835.07Similar to ZBED4: Zinc finger BED domain-containin... [more]
UPI0010F96B5A6.330e-828.89E3 SUMO-protein ligase ZBED1-like n=2 Tax=Osmia Ta... [more]
UPI000B92F94B2.150e-729.73zinc finger BED domain-containing protein 1-like i... [more]
UPI001EE5E4603.400e-730.69zinc finger BED domain-containing protein 4-like n... [more]
UPI001E1DEB191.040e-629.81E3 SUMO-protein ligase ZBED1-like n=2 Tax=Mercenar... [more]
A0A2B4RF51_STYPI1.920e-630.28Zinc finger BED domain-containing protein 1 n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13969contigM-pyrifera_M_contig13969:810..1702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score76.6
Seed ortholog evalue1e-11
Seed eggNOG ortholog7237.FBpp0279718
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA- binding
EggNOG OGs3AKST@33154,3C0JE@33208,3DH39@33213,3SR0A@50557,422FM@6656,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size426
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815831.438728-CDS-M-pyrifera_M_contig13969:809..10811622815831.438728-CDS-M-pyrifera_M_contig13969:809..1081Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13969 810..1081 +
1692277594.7997947-CDS-M-pyrifera_M_contig13969:809..10811692277594.7997947-CDS-M-pyrifera_M_contig13969:809..1081Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13969 810..1081 +
1622815831.4536283-CDS-M-pyrifera_M_contig13969:1548..17021622815831.4536283-CDS-M-pyrifera_M_contig13969:1548..1702Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13969 1549..1702 +
1692277594.8110366-CDS-M-pyrifera_M_contig13969:1548..17021692277594.8110366-CDS-M-pyrifera_M_contig13969:1548..1702Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13969 1549..1702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13969.6124.1prot_M-pyrifera_M_contig13969.6124.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13969 810..1702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13969.6124.1

>prot_M-pyrifera_M_contig13969.6124.1 ID=prot_M-pyrifera_M_contig13969.6124.1|Name=mRNA_M-pyrifera_M_contig13969.6124.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MIYGLTGKSNFQCPGVKTMVECVAQKAREVHDLVAIKLLGQDVALTGDGW
ESRSGQSFYSLTAHVGDPNTYELERHTLACRAMHDRHTGVNVCNLNQELL
KEFGVRNGRITSFTSDTAANQKKAVRLMGVPFIACACHVLEL
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mRNA from alignment at M-pyrifera_M_contig13969:810..1702+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13969.6124.1 ID=mRNA_M-pyrifera_M_contig13969.6124.1|Name=mRNA_M-pyrifera_M_contig13969.6124.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=893bp|location=Sequence derived from alignment at M-pyrifera_M_contig13969:810..1702+ (Macrocystis pyrifera P11B4 male)
ATGATATACGGGCTGACTGGAAAGTCAAATTTTCAGTGCCCTGGTGTGAA GACTATGGTGGAGTGTGTTGCGCAGAAGGCTCGCGAAGTGCATGATCTCG TGGCCATCAAGCTTCTAGGGCAAGATGTAGCCCTGACGGGAGATGGTTGG GAGTCTCGCTCTGGCCAGTCCTTCTACAGCCTCACAGCTCACGTAGGCGA CCCGAACACGTACGAGCTCGAGCGTCACACTCTGGCGTGTAGGGCGATGC ACGACAGGCACACAGGAGTCAAGTGAGTACGTACGAATATGTTGCATTTA GTGTATAGAGTGAGCACACTATGTATGTGTGTTTTTTCTTTTTTGCTTCC AGAAATATAATGCACGGTTGTAAATTAATATATAATCCAAACTGTGACTA TATTTCTTGGACAGAGTGATATACATCTACAGCAGCAGTGCGGGACTATG AACTGATGATCTACAGACAGTAATAAATCATGATCTGTCCGAGTTGTGAT ATACTCTTGAGTATTTATATTGGTATGTACTGCTGTGTTCGTAATGGTAA TACTAATAGCCGTGTTAATAGGTCCATCCAAGTATCAAACTATCTTCTGC ATCCTACTCATTTCCTTGTACACGTCTGGGTACAGAGTACTGCTGTGCAG TTAGTCACTATTAATACTGACCACCACTCACTATTGTACGGTGTTTCTCG TTGCATTTTCTATTTTGTGTCCCTCTGCGGTGCTCGCAGCGTCTGCAATC TGAACCAAGAGCTTTTGAAGGAGTTCGGCGTGAGGAACGGCAGAATCACG TCTTTCACAAGCGACACCGCAGCGAACCAGAAGAAAGCAGTTCGTTTGAT GGGCGTTCCTTTCATCGCTTGCGCCTGCCACGTATTGGAGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13969:810..1702+

>mRNA_M-pyrifera_M_contig13969.6124.1 ID=mRNA_M-pyrifera_M_contig13969.6124.1|Name=mRNA_M-pyrifera_M_contig13969.6124.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig13969:810..1702+ (Macrocystis pyrifera P11B4 male)
ATGATATACGGGCTGACTGGAAAGTCAAATTTTCAGTGCCCTGGTGTGAA
GACTATGGTGGAGTGTGTTGCGCAGAAGGCTCGCGAAGTGCATGATCTCG
TGGCCATCAAGCTTCTAGGGCAAGATGTAGCCCTGACGGGAGATGGTTGG
GAGTCTCGCTCTGGCCAGTCCTTCTACAGCCTCACAGCTCACGTAGGCGA
CCCGAACACGTACGAGCTCGAGCGTCACACTCTGGCGTGTAGGGCGATGC
ACGACAGGCACACAGGAGTCAAATGATATACGGGCTGACTGGAAAGTCAA
ATTTTCAGTGCCCTGGTGTGAAGACTATGGTGGAGTGTGTTGCGCAGAAG
GCTCGCGAAGTGCATGATCTCGTGGCCATCAAGCTTCTAGGGCAAGATGT
AGCCCTGACGGGAGATGGTTGGGAGTCTCGCTCTGGCCAGTCCTTCTACA
GCCTCACAGCTCACGTAGGCGACCCGAACACGTACGAGCTCGAGCGTCAC
ACTCTGGCGTGTAGGGCGATGCACGACAGGCACACAGGAGTCAACGTCTG
CAATCTGAACCAAGAGCTTTTGAAGGAGTTCGGCGTGAGGAACGGCAGAA
TCACGTCTTTCACAAGCGACACCGCAGCGAACCAGAAGAAAGCAGTTCGT
TTGATGGGCGTTCCTTTCATCGCTTGCGCCTGCCACGTATTGGAGCTTCG
TCTGCAATCTGAACCAAGAGCTTTTGAAGGAGTTCGGCGTGAGGAACGGC
AGAATCACGTCTTTCACAAGCGACACCGCAGCGAACCAGAAGAAAGCAGT
TCGTTTGATGGGCGTTCCTTTCATCGCTTGCGCCTGCCACGTATTGGAGC
TT
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