mRNA_M-pyrifera_M_contig13953.6120.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13953.6120.1
Unique NamemRNA_M-pyrifera_M_contig13953.6120.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13953.6120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13953contigM-pyrifera_M_contig13953:1410..2007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size598
Cds size309
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815831.1146755-UTR-M-pyrifera_M_contig13953:1409..16981622815831.1146755-UTR-M-pyrifera_M_contig13953:1409..1698Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13953 1410..1698 +
1692277594.5963316-UTR-M-pyrifera_M_contig13953:1409..16981692277594.5963316-UTR-M-pyrifera_M_contig13953:1409..1698Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13953 1410..1698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815831.1263268-CDS-M-pyrifera_M_contig13953:1698..20071622815831.1263268-CDS-M-pyrifera_M_contig13953:1698..2007Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13953 1699..2007 +
1692277594.604926-CDS-M-pyrifera_M_contig13953:1698..20071692277594.604926-CDS-M-pyrifera_M_contig13953:1698..2007Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13953 1699..2007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13953.6120.1prot_M-pyrifera_M_contig13953.6120.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13953 1699..2007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13953.6120.1

>prot_M-pyrifera_M_contig13953.6120.1 ID=prot_M-pyrifera_M_contig13953.6120.1|Name=mRNA_M-pyrifera_M_contig13953.6120.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MAVDMEGECSVLVHQTSSLPFRGVNAQCRSSALAHCRYALASCRCSGGVA
GWCTNVPLRGGCGTGYYWRGVSYSFYVATPSATASSAFEYPQSCVPLTFD
AS*
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mRNA from alignment at M-pyrifera_M_contig13953:1410..2007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13953.6120.1 ID=mRNA_M-pyrifera_M_contig13953.6120.1|Name=mRNA_M-pyrifera_M_contig13953.6120.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=598bp|location=Sequence derived from alignment at M-pyrifera_M_contig13953:1410..2007+ (Macrocystis pyrifera P11B4 male)
AGGTCCCACCAAGGGCGGAAGCTGTCGATATGGAGGAGGAGTAGCGCGCT
GGTTTTCTACCCCAATCACTGACGATGGCTGATCTGCAGGCCTGTCGATA
TGTCGAAAAGGAGGAGTATGTAGCGTGTTGGTGCATCGTCGCTATACCCT
TGAGGGCTGTCGATGTAGGGGATATGAGCGCGTAGCGTGCTGGTGCGTGC
TGGTGCGTCACCGCTATACCCTTGGGGGCTGTCGATATGCAGGAGGAGTA
GCGTGCTGCTGGTGCATCTTCCCCCCATCGCTACTCTCGATGGCTGTCGA
TATGGAAGGGGAGTGTAGTGTGCTGGTCCATCAAACCTCATCGCTACCCT
TCAGGGGTGTCAATGCGCAGTGCAGGAGTAGCGCGCTGGCGCATTGTCGC
TATGCCCTTGCGAGCTGTCGATGTTCAGGAGGAGTAGCGGGCTGGTGCAC
CAACGTCCCATTGAGGGGTGGTTGTGGCACCGGATACTACTGGAGGGGCG
TGTCATATAGTTTTTACGTAGCCACACCGTCGGCGACAGCGTCTAGCGCC
TTCGAGTACCCACAGAGCTGTGTACCTTTGACCTTTGATGCGTCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13953:1410..2007+

>mRNA_M-pyrifera_M_contig13953.6120.1 ID=mRNA_M-pyrifera_M_contig13953.6120.1|Name=mRNA_M-pyrifera_M_contig13953.6120.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig13953:1410..2007+ (Macrocystis pyrifera P11B4 male)
ATGGCTGTCGATATGGAAGGGGAGTGTAGTGTGCTGGTCCATCAAACCTC
ATCGCTACCCTTCAGGGGTGTCAATGCGCAGTGCAGGAGTAGCGCGCTGG
CGCATTGTCGCTATGCCCTTGCGAGCTGTCGATGTTCAGGAGGAGTAGCG
GGCTGGTGCACCAACGTCCCATTGAGGGGTGGTTGTGGCACCGGATACTA
CTGGAGGGGCGTGTCATATAGTTTTTACGTAGCCACACCGTCGGCGACAG
CGTCTAGCGCCTTCGAGTACCCACAGAGCTGTGTACCTTTGACCTTTGAT
GCGTCTTGAATGGCTGTCGATATGGAAGGGGAGTGTAGTGTGCTGGTCCA
TCAAACCTCATCGCTACCCTTCAGGGGTGTCAATGCGCAGTGCAGGAGTA
GCGCGCTGGCGCATTGTCGCTATGCCCTTGCGAGCTGTCGATGTTCAGGA
GGAGTAGCGGGCTGGTGCACCAACGTCCCATTGAGGGGTGGTTGTGGCAC
CGGATACTACTGGAGGGGCGTGTCATATAGTTTTTACGTAGCCACACCGT
CGGCGACAGCGTCTAGCGCCTTCGAGTACCCACAGAGCTGTGTACCTTTG
ACCTTTGATGCGTCTTGA
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