mRNA_M-pyrifera_M_contig13948.6118.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13948.6118.1
Unique NamemRNA_M-pyrifera_M_contig13948.6118.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13948.6118.1 vs. uniprot
Match: D7FS46_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS46_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 6.880e-46
Identity = 104/206 (50.49%), Postives = 120/206 (58.25%), Query Frame = 1 
Query:    1 MVAVVKAGMSSLAEDAAIISESDKPLDADTLIPLLVHVLVHASLPRVHEALNFLQNFRGASWGGEAAYYITCIEAAVSFVLDWTPEDTKVGSERSPRLAIATQVSSKTFDTDGNELPTFSRR----NTSAGKAAAAE---GGGVDENGGQSGSRRCDEREASSSRVVSEQAERESGREALMRLGIFLEKHEVQEDTVDVLSSAGWL 597
            M+ VVKAGM+ L+E+AA IS SDKPLDAD+L+PLLVH L HA+LPRVHEALNFL+NF+GA WGGE  YY+TC+EAAVSFVL W       G+   P               DGN            +T   KA A +   G G                            E + GREAL+RLGIFLEKHEVQEDTVDVLSSAGWL
Sbjct:    1 MLDVVKAGMTLLSEEAARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCLEAAVSFVLGW-------GAAADPNAD----------GDDGNXXXXXXXXXXXDSTKGSKAEAGKKLFGRGDGSGXXXXXXXXXXXXXXXXXXXXXXXXEPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 189
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BLAST of mRNA_M-pyrifera_M_contig13948.6118.1 vs. uniprot
Match: A0A6H5JK77_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK77_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.570e-36
Identity = 92/200 (46.00%), Postives = 108/200 (54.00%), Query Frame = 1 
Query:    1 MVAVVKAGMSSLAEDAAIISESDKPLDADTLIPLLVHVLVHASLPRVHEALNFLQNFRGASWGGEAAYYITCIEAAVSFVLDW-TPEDTKVGSERSPRLAIATQVSSKTFDTDGNELPTFSRRNTSAGKAAAAEGGGVDENGGQSGSRRCDEREASSSRVVSEQAERESGREALMRLGIFLEKHEVQEDTVDVLSSAGWL 597
            M+ V+KAGM+ L+E+AA IS SDKPLDAD+L+PLLVH L HA+LPRVHEAL+FL+NF+GA WGGE  YY+TC+EAAVSFVLDW    D     +                                                                         + GREAL+RLGIFLEKHEVQEDTVDVLSSAGWL
Sbjct:  940 MLDVIKAGMTLLSEEAARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALSFLRNFQGAGWGGEQEYYVTCLEAAVSFVLDWGAVADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------XXXXXXXPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 1127
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BLAST of mRNA_M-pyrifera_M_contig13948.6118.1 vs. uniprot
Match: A0A7S2GUB1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUB1_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.750e-17
Identity = 64/196 (32.65%), Postives = 99/196 (50.51%), Query Frame = 1 
Query:   19 AGMSSLAEDAAIISESDKPLDADTLIPLLVHVLVHASLPRVHEALNFLQNFRGASWGGEAAYYITCIEAAVSFVLDW-TPEDTKVGSERSPRLAIATQVSSKTFDTDGNELPTFSRRNT--SAGKAAAAEGGGVDENGGQSGSRRCDEREASSSRVVSEQAERESGREALMRLGIFLEKHEVQEDTVDVLSSAGWL 597
            A M  L  +A +I+  DKPLDAD + P+LV  +VH+ LP +H  + FL+NF  A   GEAAY++TC EAAVSFV+    P D +  S  +    +  +   ++ D+D  E+     ++   +A  +  +     +   G  G    +E EA+                A+M+LG +L   +  EDT+DVL   GW+
Sbjct:  120 AAMRMLHREATLIA-GDKPLDADVMFPILVLAIVHSKLPHMHSYIFFLRNFAIADTTGEAAYFLTCCEAAVSFVMKMDVPSDQRDLSRTTTATTVGQRGRIESNDSDDPEVGVSDEQSVRRTAMYSRESVSSSDERTEGLDGKDWSNEGEAA----------------AMMQLGHWLGAQQAMEDTIDVLEQEGWM 298
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BLAST of mRNA_M-pyrifera_M_contig13948.6118.1 vs. uniprot
Match: A0A6A5BKL0_NAEFO (VPS9 domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BKL0_NAEFO)

HSP 1 Score: 67.8 bits (164), Expect = 9.710e-10
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   82 ADTLIPLLVHVLVHASLPRVHEALNFLQNFRGASWGGEAAYYITCIEAAVSFVLDWTPED 261
            AD   P+LV+V+VH+ LP +H AL++L  F   S   E  YY+TC+E AV +V + TPED
Sbjct:  953 ADEFFPILVYVVVHSHLPNIHSALSYLSKFASQSRNSEVVYYLTCLEGAVMYVQEITPED 1012
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13948.6118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FS46_ECTSI6.880e-4650.49VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JK77_9PHAE3.570e-3646.00VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2GUB1_9STRA4.750e-1732.65Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6A5BKL0_NAEFO9.710e-1048.33VPS9 domain-containing protein n=1 Tax=Naegleria f... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13948contigM-pyrifera_M_contig13948:2871..5376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue1.5e-37
Seed eggNOG ortholog2880.D7FS46
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Vacuolar sorting protein 9 (VPS9) domain
EggNOG OGs29NWZ@1,2QTH6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size600
Cds size600
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13948.6118.1prot_M-pyrifera_M_contig13948.6118.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13948 2871..5376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.937186-CDS-M-pyrifera_M_contig13948:2870..29301622815830.937186-CDS-M-pyrifera_M_contig13948:2870..2930Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13948 2871..2930 +
1692277594.5035717-CDS-M-pyrifera_M_contig13948:2870..29301692277594.5035717-CDS-M-pyrifera_M_contig13948:2870..2930Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13948 2871..2930 +
1622815830.9508328-CDS-M-pyrifera_M_contig13948:3643..38011622815830.9508328-CDS-M-pyrifera_M_contig13948:3643..3801Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13948 3644..3801 +
1692277594.512513-CDS-M-pyrifera_M_contig13948:3643..38011692277594.512513-CDS-M-pyrifera_M_contig13948:3643..3801Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13948 3644..3801 +
1622815830.9655907-CDS-M-pyrifera_M_contig13948:4940..51241622815830.9655907-CDS-M-pyrifera_M_contig13948:4940..5124Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13948 4941..5124 +
1692277594.5199325-CDS-M-pyrifera_M_contig13948:4940..51241692277594.5199325-CDS-M-pyrifera_M_contig13948:4940..5124Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13948 4941..5124 +
1622815830.9778495-CDS-M-pyrifera_M_contig13948:5178..53761622815830.9778495-CDS-M-pyrifera_M_contig13948:5178..5376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13948 5179..5376 +
1692277594.5275-CDS-M-pyrifera_M_contig13948:5178..53761692277594.5275-CDS-M-pyrifera_M_contig13948:5178..5376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13948 5179..5376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13948.6118.1

>prot_M-pyrifera_M_contig13948.6118.1 ID=prot_M-pyrifera_M_contig13948.6118.1|Name=mRNA_M-pyrifera_M_contig13948.6118.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp
MVAVVKAGMSSLAEDAAIISESDKPLDADTLIPLLVHVLVHASLPRVHEA
LNFLQNFRGASWGGEAAYYITCIEAAVSFVLDWTPEDTKVGSERSPRLAI
ATQVSSKTFDTDGNELPTFSRRNTSAGKAAAAEGGGVDENGGQSGSRRCD
EREASSSRVVSEQAERESGREALMRLGIFLEKHEVQEDTVDVLSSAGWL*
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mRNA from alignment at M-pyrifera_M_contig13948:2871..5376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13948.6118.1 ID=mRNA_M-pyrifera_M_contig13948.6118.1|Name=mRNA_M-pyrifera_M_contig13948.6118.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2506bp|location=Sequence derived from alignment at M-pyrifera_M_contig13948:2871..5376+ (Macrocystis pyrifera P11B4 male)
ATGGTTGCGGTCGTGAAAGCGGGGATGTCGTCCCTGGCCGAAGACGCCGC
TATAATATCGGTGCGTGCCTCGCGTTAAGTGTCGATCAGAAAAAAAATAC
CGAAGGAACATGAGAAAAAATGGTGGCGCTCTACTGCCGTGCCATAATAG
CAGTGTGTCGTGTGGTCTGCTGTTTAGTCGTGTGCTGCTGTTTAGACTAT
ATGTGACGGGGATAGAAGGCAGGAAATATAGATGCATCTCCGTGACGATG
GGCATCTTGTCGCATTTTTCCATTTGGGGCGCTGGGCGGGGTGAGAGTTG
GCGTGTCTGCCATCTGAAAGTTGTTCCAGCGGTGATAATGGGCGCCTAGG
TTAGTAGAGGTAGGTGCGACGCAAGACGCCGAGGAAACGCTGCGCTCGAG
ATGCCCTCAAAAGCCCAGGACGAAGAGGGGGTTTTGAATTAATGCACGGT
ATATTGTGAAGAATAGCGTCGCGCTCAGGCCATGTCTCATCGTACGTCAG
CTTTATGGAGATACAAAACCTTCCGCAGGCGTTCACATACCGTGGGGTGT
CACATTGGCGTGCCTTATCCCCCCCCCTGTTCTGTCTCAAAAGGGGCACG
TGGTCAATGATCTGACGACTACTGTAGGGCAAGCAACAACACGTGGAAAC
CTGACGTGCGCCATCCCGGCATGATAGGGATGCGAGGGTGTATGGTCTTA
CGACTACAGCCATGCATGACATGAGGACCCCCCCCCCCCCTGTCTCTTTC
CCGTCACCCCTACTGCGCGGCAGGAGTCCGACAAGCCCTTGGATGCCGAC
ACCCTCATCCCCCTGCTGGTGCACGTCCTTGTGCACGCGAGCCTGCCGCG
AGTGCACGAGGCCCTGAATTTTCTCCAAAACTTCCGCGGGGCCTCTTGGG
GAGGCGAGGCGGCCTACTACATCACGTGCATGTGAGTGCCGCACTCGAGT
GCCGTCGCGCAACGCCTCTTCTTTAATTGTGAGGGCACAGCGGTTTCGGA
GCGCACACCCTGCGTTTGGTGGCTAAATTCGTGGGAATAGTGTGGCGCGC
ACATCCTTGGTTCGGTGGCTAAATGCCCGGGAATATTGTAATAATTGGGG
GCGGGGGGCAGGTGCTGGTCTAGGGCTCCCGGGACTCCGTTGTTTGCTTG
AATCGGCCATGTAGCACCGTCTGGGGCGCCACGTCGGGTGTTGCTGTGAC
GTCCCTCCACTGTCTTTTGCTTCGTGGAGTTTGGTTGTGTCCGGCGCATG
TCGTGTCCTGACGGAGGCGTTTCTGCGCAGCTCTTGTCATTTTTTTGCAT
ACTTTATGTTTTGGGGTAAGAACCCTGTGTCCTCCATTTTCGAGACCGCT
GAATGAAGGCTTCACGGTTGAGGAAGCCAACCTAGCGGAAGCCAACCTAA
CCCGACGTGCTCCGTCCCGGGGTTGTAGGAATGCGAGGGTCTATGGTCAT
ACGACAACGTCCAGGCATGATATCGAGTACCCCCTCCCCCCGGTCTGCCT
GGTCGGTGAAAGCCCGACGTGCTCCGTCCCGGTGTTGCAGGGATGCAAGG
GTGTATGGTCATACGACTACGGCCGTGCATGACAGGGAGTACCCCCCCCC
CCAGAGGGTCTATGGTCATACGACTACGGCCATGCATGATATCGAGTACC
CCCATTGAAGCTGCCATCCACATGCAAGTCCGCCTCACAAGCGGTTCTTA
GCAGGATGCAGCTCGTCCTTCATGCGACTCGCCGAACACCCCACCGGCGC
TTCGCGCTTGGTGCAAGCAATGTCTACCTCGTCGGTGAAAACCCGACGTC
CTCCGTCCCGGCATTGTGGAGAGGGTCTATGGTGGACGACTACGGCCATG
CATGATGTCGAGAGTTCCCCCCCCGCCCCACTATCCCTCACCCCACCCTC
TCCATCCTCTACCTCCATCCTCTCCTCCTCTCCCGTGTACCCCCCGCCCC
CCACCACCCACCACTTTCCTACTTCACCCCCTTCCACCCTCCAGTGCCGT
CAAAGCTTTACCTACCCGTCTCCGACCCCCCCCCTTGTTCCTTGGCGCGC
CCTCGTTCTACACACGACAGCGAAGCGGCCGTTTCGTTCGTTCTAGACTG
GACCCCCGAAGACACCAAGGTCGGCAGCGAGCGCTCGCCCCGCCTTGCCA
TCGCCACACAAGTTTCGTCGAAAACCTTCGATACCGACGGAAACGAGCTT
CCGACCTTTTCGCGACGGAATACCAGCGCCGGCAAGGCCGCTGCTGCTGA
AGGTGTCAATCCTGATGGCAGCAGCGCATTTTTCTGTGATACGCCGCGGG
CCACAAAGGGCGGCGTCGACGAAAACGGCGGGCAGAGCGGCTCTCGACGT
TGTGATGAGCGGGAAGCGTCGTCGTCGCGGGTCGTGAGCGAGCAGGCGGA
GCGAGAGAGCGGCCGAGAAGCGCTCATGCGGCTCGGGATTTTTCTTGAGA
AACACGAGGTGCAGGAGGACACCGTGGACGTTTTGTCGTCGGCGGGATGG
CTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13948:2871..5376+

>mRNA_M-pyrifera_M_contig13948.6118.1 ID=mRNA_M-pyrifera_M_contig13948.6118.1|Name=mRNA_M-pyrifera_M_contig13948.6118.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig13948:2871..5376+ (Macrocystis pyrifera P11B4 male)
ATGGTTGCGGTCGTGAAAGCGGGGATGTCGTCCCTGGCCGAAGACGCCGC
TATAATATCGATGGTTGCGGTCGTGAAAGCGGGGATGTCGTCCCTGGCCG
AAGACGCCGCTATAATATCGGAGTCCGACAAGCCCTTGGATGCCGACACC
CTCATCCCCCTGCTGGTGCACGTCCTTGTGCACGCGAGCCTGCCGCGAGT
GCACGAGGCCCTGAATTTTCTCCAAAACTTCCGCGGGGCCTCTTGGGGAG
GCGAGGCGGCCTACTACATCACGTGCATGAGTCCGACAAGCCCTTGGATG
CCGACACCCTCATCCCCCTGCTGGTGCACGTCCTTGTGCACGCGAGCCTG
CCGCGAGTGCACGAGGCCCTGAATTTTCTCCAAAACTTCCGCGGGGCCTC
TTGGGGAGGCGAGGCGGCCTACTACATCACGTGCATCGAAGCGGCCGTTT
CGTTCGTTCTAGACTGGACCCCCGAAGACACCAAGGTCGGCAGCGAGCGC
TCGCCCCGCCTTGCCATCGCCACACAAGTTTCGTCGAAAACCTTCGATAC
CGACGGAAACGAGCTTCCGACCTTTTCGCGACGGAATACCAGCGCCGGCA
AGGCCGCTGCTGCTGAAGGTCGAAGCGGCCGTTTCGTTCGTTCTAGACTG
GACCCCCGAAGACACCAAGGTCGGCAGCGAGCGCTCGCCCCGCCTTGCCA
TCGCCACACAAGTTTCGTCGAAAACCTTCGATACCGACGGAAACGAGCTT
CCGACCTTTTCGCGACGGAATACCAGCGCCGGCAAGGCCGCTGCTGCTGA
AGGTGGCGGCGTCGACGAAAACGGCGGGCAGAGCGGCTCTCGACGTTGTG
ATGAGCGGGAAGCGTCGTCGTCGCGGGTCGTGAGCGAGCAGGCGGAGCGA
GAGAGCGGCCGAGAAGCGCTCATGCGGCTCGGGATTTTTCTTGAGAAACA
CGAGGTGCAGGAGGACACCGTGGACGTTTTGTCGTCGGCGGGATGGCTTT
GAGGCGGCGTCGACGAAAACGGCGGGCAGAGCGGCTCTCGACGTTGTGAT
GAGCGGGAAGCGTCGTCGTCGCGGGTCGTGAGCGAGCAGGCGGAGCGAGA
GAGCGGCCGAGAAGCGCTCATGCGGCTCGGGATTTTTCTTGAGAAACACG
AGGTGCAGGAGGACACCGTGGACGTTTTGTCGTCGGCGGGATGGCTTTGA
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