mRNA_M-pyrifera_M_contig1394.6114.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1394.6114.1
Unique NamemRNA_M-pyrifera_M_contig1394.6114.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig1394.6114.1 vs. uniprot
Match: A0A6H5JHD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD3_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.180e-22
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:  112 MFGWWGQKEK--EDPCAEAMAAYLRCVEGKADGLREGDECVDEAEAYKKCRQLVKEAKRQGAKTVPVGVAAATT----DKQQPR 345
            MF W+ +K++  +DPC EAM AY+RCVEGKADGLR+GDEC  E EAYKKCRQLV+EAK+       V  A  TT    DKQQPR
Sbjct:    1 MFDWFREKKEAEKDPCLEAMGAYVRCVEGKADGLRDGDECTAEVEAYKKCRQLVREAKKLAKADAAVPAAGGTTADDGDKQQPR 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig1394.6114.1 vs. uniprot
Match: M4BUJ1_HYAAE (CHCH domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUJ1_HYAAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.840e-8
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:  142 EDPCAEAMAAYLRCVEGK---ADGLREGDECVDEAEAYKKCRQLVKEAK 279
            +DPCA+AM AY++CVE K   + GLR+G+EC  E+EAY++CR+  KE K
Sbjct:   13 DDPCADAMKAYVKCVEAKTAESGGLRDGEECEKESEAYRECRRKAKELK 61
[Close]
BLAST of mRNA_M-pyrifera_M_contig1394.6114.1 vs. uniprot
Match: A0A6G0WKK6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WKK6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.920e-8
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:  145 DPCAEAMAAYLRCVEGK---ADGLREGDECVDEAEAYKKCRQLVKEAK 279
            DPCA+A+ AYL CVE K   + GLR+GDECV+E + YK+CRQ  K+ K
Sbjct:   12 DPCADALQAYLTCVEAKNKESGGLRDGDECVEEIKVYKQCRQDNKKKK 59
[Close]
BLAST of mRNA_M-pyrifera_M_contig1394.6114.1 vs. uniprot
Match: A0A8K1CSX1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSX1_PYTOL)

HSP 1 Score: 58.2 bits (139), Expect = 2.110e-7
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  136 EKEDPCAEAMAAYLRCVEGK---ADGLREGDECVDEAEAYKKCRQLVKEAKR 282
            E  +PCA  M  Y++CVE K   + GLR+GDEC  E+EAY++CR++ KE K+
Sbjct:   12 EAVNPCATEMETYIKCVESKNAESGGLRDGDECEKESEAYRECRRIAKELKK 63
[Close]
BLAST of mRNA_M-pyrifera_M_contig1394.6114.1 vs. uniprot
Match: A0A2D4C0G3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0G3_PYTIN)

HSP 1 Score: 58.2 bits (139), Expect = 2.730e-7
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  145 DPCAEAMAAYLRCVEGK---ADGLREGDECVDEAEAYKKCRQLVKEAKR 282
            +PCA  M AY++CVE K   + GLR+GDEC  E EAY++CR++ KE K+
Sbjct:   24 NPCAAQMDAYMKCVESKNTESGGLRDGDECEKEGEAYRECRRIAKELKK 72
[Close]
BLAST of mRNA_M-pyrifera_M_contig1394.6114.1 vs. uniprot
Match: A0A5D6XT73_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XT73_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.810e-7
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  136 EKEDPCAEAMAAYLRCVEGK---ADGLREGDECVDEAEAYKKCRQLVKE 273
            E+E+PCA  M AY++CVE +   + GLR+GDEC  E EAY++CR+  KE
Sbjct:   11 ERENPCAAHMDAYIKCVEARNADSGGLRDGDECEKEGEAYRECRKRAKE 59
[Close]
BLAST of mRNA_M-pyrifera_M_contig1394.6114.1 vs. uniprot
Match: K3W5T4_GLOUD (CHCH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5T4_GLOUD)

HSP 1 Score: 57.0 bits (136), Expect = 4.740e-7
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  145 DPCAEAMAAYLRCVEGK---ADGLREGDECVDEAEAYKKCRQLVKEAKRQGAK 294
            +PCA  M  Y++CVE +   + GLR+GDEC  E+EAY++CR++VKE ++  AK
Sbjct:   12 NPCATEMDVYIKCVESRNAESGGLRDGDECEKESEAYRECRKMVKEFQQSQAK 64
[Close]
BLAST of mRNA_M-pyrifera_M_contig1394.6114.1 vs. uniprot
Match: W2IZF8_PHYPR (CHCH domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2IZF8_PHYPR)

HSP 1 Score: 54.7 bits (130), Expect = 2.950e-6
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:  145 DPCAEAMAAYLRCVEGK---ADGLREGDECVDEAEAYKKCRQLVKEAK 279
            +PCA  M  Y++CVE K   + GLR+G+EC  E+EAY++CR+ VKE K
Sbjct:   12 NPCAGEMGTYVKCVEAKTAESGGLRDGEECEKESEAYRECRRKVKELK 59
[Close]
BLAST of mRNA_M-pyrifera_M_contig1394.6114.1 vs. uniprot
Match: A0A484EIA5_BRELC (CHCH domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EIA5_BRELC)

HSP 1 Score: 54.3 bits (129), Expect = 4.350e-6
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  151 CAEAMAAYLRCVEGK---ADGLREGDECVDEAEAYKKCRQLVKEAK 279
            C E M AY++CVE K   + GLR+G+EC  E+EAY++CR++ KE K
Sbjct:   14 CTEEMEAYVKCVEAKTAESGGLRDGEECEKESEAYRECRRMAKEVK 59
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1394.6114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JHD3_9PHAE2.180e-2260.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
M4BUJ1_HYAAE2.840e-855.10CHCH domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A6G0WKK6_9STRA9.920e-858.33Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8K1CSX1_PYTOL2.110e-750.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C0G3_PYTIN2.730e-753.06Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A5D6XT73_9STRA2.810e-753.06Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3W5T4_GLOUD4.740e-749.06CHCH domain-containing protein n=1 Tax=Globisporan... [more]
W2IZF8_PHYPR2.950e-652.08CHCH domain-containing protein n=12 Tax=Phytophtho... [more]
A0A484EIA5_BRELC4.350e-652.17CHCH domain-containing protein n=1 Tax=Bremia lact... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1394contigM-pyrifera_M_contig1394:5783..7589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog272952.HpaP810179
Hectar predicted targeting categoryother localisation
EggNOG OGs2E6MP@1,2SDAV@2759,3QGRI@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1321
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1394.6114.1prot_M-pyrifera_M_contig1394.6114.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1394 5894..6616 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.3906398-UTR-M-pyrifera_M_contig1394:5782..58931622815830.3906398-UTR-M-pyrifera_M_contig1394:5782..5893Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1394 5783..5893 +
1692277594.1927564-UTR-M-pyrifera_M_contig1394:5782..58931692277594.1927564-UTR-M-pyrifera_M_contig1394:5782..5893Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1394 5783..5893 +
1622815830.4321272-UTR-M-pyrifera_M_contig1394:6616..75891622815830.4321272-UTR-M-pyrifera_M_contig1394:6616..7589Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1394 6617..7589 +
1692277594.2232766-UTR-M-pyrifera_M_contig1394:6616..75891692277594.2232766-UTR-M-pyrifera_M_contig1394:6616..7589Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1394 6617..7589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.4024634-CDS-M-pyrifera_M_contig1394:5893..59611622815830.4024634-CDS-M-pyrifera_M_contig1394:5893..5961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1394 5894..5961 +
1692277594.203055-CDS-M-pyrifera_M_contig1394:5893..59611692277594.203055-CDS-M-pyrifera_M_contig1394:5893..5961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1394 5894..5961 +
1622815830.420205-CDS-M-pyrifera_M_contig1394:6447..66161622815830.420205-CDS-M-pyrifera_M_contig1394:6447..6616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1394 6448..6616 +
1692277594.2130997-CDS-M-pyrifera_M_contig1394:6447..66161692277594.2130997-CDS-M-pyrifera_M_contig1394:6447..6616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1394 6448..6616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1394.6114.1

>prot_M-pyrifera_M_contig1394.6114.1 ID=prot_M-pyrifera_M_contig1394.6114.1|Name=mRNA_M-pyrifera_M_contig1394.6114.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MFGWWGQKEKEDPCAEAMAAYLRCVEGKADGLREGDECVDEAEAYKKCRQ
LVKEAKRQGAKTVPVGVAAATTDKQQPR*
back to top

mRNA from alignment at M-pyrifera_M_contig1394:5783..7589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1394.6114.1 ID=mRNA_M-pyrifera_M_contig1394.6114.1|Name=mRNA_M-pyrifera_M_contig1394.6114.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1807bp|location=Sequence derived from alignment at M-pyrifera_M_contig1394:5783..7589+ (Macrocystis pyrifera P11B4 male)
GAAACAGGTGCGGCATAGGTTCCGCCGGATGTTTCGCATGAATAAGCGAT
AGCAGCACGTGGCAAATCGTAGCTCTGACTTCGGCGGTTACAGTCAGGAC
GCGAGTGAACGATGTTTGGGTGGTGGGGCCAAAAGGAAAAGGAAGACCCC
TGTGCGGAGGCCATGGCCGCCTACCTCAGGTGAGAGAATACCCTCAAACT
CAAAACATCCGAACGTTGGAGTGCTTCCTTGAAGTGTACTGGTATTGGGT
ATCGGGTGGCTATGCGCGAAGCCGTGGAATGGGTTGGTATGTGAGAGGCC
ACGGAATTCTGAATTTTGAAACCACTCTGTTTATGTTGAAGCTCCTGACT
CCTGGCAGTCGGCGCGTGATCTCGCTCTCTTGTAGTACAGTAGAGAACAG
AGCAAGAGCATGACACAATTGCCGTTGGTGGGAGACCGTGCCTCAAACAG
CGAGCAGGTTCCTAATTTCCTCATGAAGCCCATCGCGTTGCCACTGCTGT
TGTGTCGTGGTGTGGTCGCGCAAATGTGAGTGGCACGCGCACTCTTGCCT
CTTGCCAGGTCTCCCTCGTAGATATAAAAGCATAACGGTTTCGTGTTTTG
TCTTGTTTGTTTTCGTTTCGTTTCGTCTCGTTCGTCGCTTCCTTTCGCGC
TAATACCGGCCGCAGATGTGTCGAAGGCAAGGCCGACGGGCTGAGAGAGG
GAGACGAATGTGTGGATGAAGCCGAGGCGTACAAAAAATGTCGCCAGTTG
GTGAAGGAGGCCAAGCGTCAAGGCGCCAAGACCGTACCCGTTGGTGTGGC
GGCAGCTACGACCGACAAGCAGCAGCCTCGATAGCACGGCACTGCAGGCC
GCAGGGCAGGCGTGAAACCTGCTTAGGGGCAAACGGCTGGAAGACCTTTC
AGCTATAGTGGTTGGGTACTCGTACTGCCGTATGTTGGCGACTGATGTCA
TGATCCTTTGCTTTTATCTGGTGGTCGTGCTCTTCTATAAGCGGCTGAAA
ATCCTTTTATTAGTAGGCTGCACGCTGATGGCTATGAACCTGGTAGCTGA
CTACACGTCGACGGGTTGCTTAATTTTTCTTTAAGGAACCCCTTCGGTCA
AACAAAACAAAACGTATCTGCGTCTTTTGAATATATGTTTTTCGTGCTTT
TACAGCATTACTATTTCTGGTACAATAACGACATATCACGATTCCTCACC
GAACACGGCATAGGTCCTTTTCTAGGCCTCAGACCATCTCCCTAGCAACG
TATAGCGTGTTTGTTATGGTCTCTACGAGGTGTTGGGGGCCTTGGATCTG
CAAGGGAGGGCAGCAATTGCTTGCTGTGTTTGCATCACGAAACGAAACTT
CTCACCGGCAAGAATTTTGATAGTTCCGGAGCTCCCGTTTGGTGTATACA
CTCTGCTGTGGCGGCGTAGGACGCTACGGACGGTCGAACGAGGGGCCCAG
ATAGGTTTGCCAACTATAATAATAGTGCTCAGCGTTGTCGACGAAAATCT
GAGTTACAACAGTATCAGGAGCCTGAGATACTTCCTTTTTTCTAATTCAT
CTACGGGTAGCAGAGGTACGGGGAGTTGCTTTTTAGTGAGAGGTACTTTT
CGTTGTGGAAAAGGCGTCGGATCGATTAGGTGCCTGACACAAAAATATTG
CCCCCCATGACCTACATTCTCTTAAACTACCGTGAGGCAGATGAGTCTGA
GCATTAGAGCTGGAGAAGTGTCTTCGCTAGGGAGTCATGAAAAGTCGAAA
TTATACCAGAAATAGTATTGCAATGGACTTGATTTTCCTCAAGACTATAC
GAAGTGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1394:5783..7589+

>mRNA_M-pyrifera_M_contig1394.6114.1 ID=mRNA_M-pyrifera_M_contig1394.6114.1|Name=mRNA_M-pyrifera_M_contig1394.6114.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig1394:5783..7589+ (Macrocystis pyrifera P11B4 male)
ATGTTTGGGTGGTGGGGCCAAAAGGAAAAGGAAGACCCCTGTGCGGAGGC
CATGGCCGCCTACCTCAGATGTTTGGGTGGTGGGGCCAAAAGGAAAAGGA
AGACCCCTGTGCGGAGGCCATGGCCGCCTACCTCAGATGTGTCGAAGGCA
AGGCCGACGGGCTGAGAGAGGGAGACGAATGTGTGGATGAAGCCGAGGCG
TACAAAAAATGTCGCCAGTTGGTGAAGGAGGCCAAGCGTCAAGGCGCCAA
GACCGTACCCGTTGGTGTGGCGGCAGCTACGACCGACAAGCAGCAGCCTC
GATAGATGTGTCGAAGGCAAGGCCGACGGGCTGAGAGAGGGAGACGAATG
TGTGGATGAAGCCGAGGCGTACAAAAAATGTCGCCAGTTGGTGAAGGAGG
CCAAGCGTCAAGGCGCCAAGACCGTACCCGTTGGTGTGGCGGCAGCTACG
ACCGACAAGCAGCAGCCTCGATAG
back to top