mRNA_M-pyrifera_M_contig13938.6113.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13938.6113.1
Unique NamemRNA_M-pyrifera_M_contig13938.6113.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig13938.6113.1 vs. uniprot
Match: A0A6H5L4K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4K4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.970e-13
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:    2 MVSLVVSAVVFGHLLGLGCWVGALIVFGTIGYRIRRKIQA 121
            MVSLV+SAV+FGHLLGLGCWVGA +VFGTIGYRIRRK+Q+
Sbjct:  351 MVSLVLSAVMFGHLLGLGCWVGAFVVFGTIGYRIRRKMQS 390
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13938.6113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4K4_9PHAE2.970e-1385.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13938contigM-pyrifera_M_contig13938:3392..5140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size290
Cds size126
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13938.6113.1prot_M-pyrifera_M_contig13938.6113.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13938 3555..5139 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.297106-UTR-M-pyrifera_M_contig13938:3391..35541622815830.297106-UTR-M-pyrifera_M_contig13938:3391..3554Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13938 3392..3554 -
1692277594.1479928-UTR-M-pyrifera_M_contig13938:3391..35541692277594.1479928-UTR-M-pyrifera_M_contig13938:3391..3554Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13938 3392..3554 -
1622815830.3495586-UTR-M-pyrifera_M_contig13938:5139..51401622815830.3495586-UTR-M-pyrifera_M_contig13938:5139..5140Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13938 5140..5140 -
1692277594.1836026-UTR-M-pyrifera_M_contig13938:5139..51401692277594.1836026-UTR-M-pyrifera_M_contig13938:5139..5140Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13938 5140..5140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.3173838-CDS-M-pyrifera_M_contig13938:3554..36511622815830.3173838-CDS-M-pyrifera_M_contig13938:3554..3651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13938 3555..3651 -
1692277594.1572018-CDS-M-pyrifera_M_contig13938:3554..36511692277594.1572018-CDS-M-pyrifera_M_contig13938:3554..3651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13938 3555..3651 -
1622815830.3331242-CDS-M-pyrifera_M_contig13938:5110..51391622815830.3331242-CDS-M-pyrifera_M_contig13938:5110..5139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13938 5111..5139 -
1692277594.1668515-CDS-M-pyrifera_M_contig13938:5110..51391692277594.1668515-CDS-M-pyrifera_M_contig13938:5110..5139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13938 5111..5139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13938.6113.1

>prot_M-pyrifera_M_contig13938.6113.1 ID=prot_M-pyrifera_M_contig13938.6113.1|Name=mRNA_M-pyrifera_M_contig13938.6113.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
MVSLVVSAVVFGHLLGLGCWVGALIVFGTIGYRIRRKIQAT*
back to top

mRNA from alignment at M-pyrifera_M_contig13938:3392..5140-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13938.6113.1 ID=mRNA_M-pyrifera_M_contig13938.6113.1|Name=mRNA_M-pyrifera_M_contig13938.6113.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at M-pyrifera_M_contig13938:3392..5140- (Macrocystis pyrifera P11B4 male)
GATGGTGTCCCTCGTCGTCTCCGCTGTAGTGTGAGTGGTCTGGTGTTACC
GTTGATGTTTCCGTTGCCGTTGATGGTATCGTTGGCGTTGATGTCACTGG
TGGTGGTACCGTTGATGTTGATATTACCGTTGGCGTCCATGCTGCCTTCG
ATGCTGCGGTTGGCTTTGATTTTACCGTTGGCGTTGGCTATGTACGCCAT
CAGCAAGTTTGGACCGATCATCTTCACGGTCGCCACGTCATTACCATGAA
GCAGACGGTGTCTCTCGTCGTCTCTGCTGCCGTGTGAGCAGCCCGATGTC
ACGGTTGGTTGGTGGGTACCGTTGGGTTACCGTTGGGTTGAGGCCACAGG
ATGCGGAGCCAAAGACGTTCGGTATGATGCACCAGGTATCGATCGTCGAT
ATATCGGAAAAAAATTTACATCGGCAGTCCGACTTTTCGTTACATCGACT
TTCGGTACGAGATCCAATGGTAACACCCCTCGTCGTCTCCGCTGCAGTGT
GACGGACTCGATGTTGCCTGTGAAGTTGTGGTCGTCGATGTCGTTAATGA
TGTCGTTGCTGTTGATGTTACTGGAATCGTCACTGTTGCCGTTGAAGAAT
GTTGCACACCTAGGACAGATGATCTACAGATCAAACATATCATGATCTAC
TGTAGACCTTTCAGGGCAGATATAGTCCTGATCTGTATGATCTACATGAT
TTCACTCATGTCGCCGGGTATGAGCCGTATATTCTACATGATCTAGCATA
TGTTTCCTTGGTTGGACCTATCTGTACTACTGTGTACAGATCCTGTACAA
CATATCATCACGGCACTCTGGGATCTAGATGATATATGTTAGCTATCTGT
AGATCTTCTACAGTAGATCGTGATATGTCGGAGGTGTGGGATGTTGCCGT
TATGCCGTTAGCGTTGCCGTTAGTTGAAGTTGCCGTTTCGTTTGATTCGT
CGTTACTGCTGATATTACCGTTGACGTTACAGTTGATGTTACTGGTGGCG
CTGCTTTTCATGTTACCGCTGCCGTTTCTGTTTATGTTGCCGTTGCCGGT
ATACTGTTAATGTTCCCGTTGCCGTTACTGTTAATGTAACCGTTGACGTT
GCCATTATTGTCGCCCCGTCCTCTTATTCTGCTCTCACGTTTTGTTCTCC
TCTTCCTCCTGTTACTCTTGTTGCTGGTGTTGTTGCATGCCGTTGCTGTC
GCTGCTGCTGTTGTTGCATGCCGTTGCTGTCGCTTGCTGCTGTTGTTGCT
GCTGCTGTTTCTACTGTTGCTACTGCTGCCACTGCTCCCATGTATGTTGC
TGTTGCGTTTGCTACTGCGTCTGTCTTTGTCGCTGCTGCTATCGCTACCA
TTGCTATTGCTGTTCGTATGCCTGCACTCTGTCTGCTTCTGTTGCTGTTG
CTGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTGTGCTGCTGGTATCGCTA
CTATCGTTGTTGCTGTGGTGGTGGTTATGGCCCCCTTAGCTTTGGGCACT
TGCTAGGGCTGGGTTGCTGGGTCGGTGCTCTTATAGTGTTCGGTACAATC
GGATACCGCATAAGGCGGAAGATTCAGGCGACCTGATCTCGCAGAATCCC
CTAGAATATCGTCACAGATGAGGGCTGATAGGCTGATACGATATGAAATA
GGCGTGGAACGAGTGATTGCGTGGGGGATGGAATGAGGAGATGGGGATAA
CATGGGATGATATGGGATGGTATGAACTGGGATAGGAAGGGATTCGACG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13938:3392..5140-

>mRNA_M-pyrifera_M_contig13938.6113.1 ID=mRNA_M-pyrifera_M_contig13938.6113.1|Name=mRNA_M-pyrifera_M_contig13938.6113.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig13938:3392..5140- (Macrocystis pyrifera P11B4 male)
ATGGTGTCCCTCGTCGTCTCCGCTGTAGTATGGTGTCCCTCGTCGTCTCC
GCTGTAGTCTTTGGGCACTTGCTAGGGCTGGGTTGCTGGGTCGGTGCTCT
TATAGTGTTCGGTACAATCGGATACCGCATAAGGCGGAAGATTCAGGCGA
CCTGACTTTGGGCACTTGCTAGGGCTGGGTTGCTGGGTCGGTGCTCTTAT
AGTGTTCGGTACAATCGGATACCGCATAAGGCGGAAGATTCAGGCGACCT
GA
back to top