mRNA_M-pyrifera_M_contig13930.6112.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13930.6112.1
Unique NamemRNA_M-pyrifera_M_contig13930.6112.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13930.6112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13930contigM-pyrifera_M_contig13930:2667..3473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size807
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13930.6112.1prot_M-pyrifera_M_contig13930.6112.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13930 3045..3455 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.2338026-UTR-M-pyrifera_M_contig13930:2666..30441622815830.2338026-UTR-M-pyrifera_M_contig13930:2666..3044Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13930 2667..3044 +
1692277594.1226623-UTR-M-pyrifera_M_contig13930:2666..30441692277594.1226623-UTR-M-pyrifera_M_contig13930:2666..3044Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13930 2667..3044 +
1622815830.2610614-UTR-M-pyrifera_M_contig13930:3455..34731622815830.2610614-UTR-M-pyrifera_M_contig13930:3455..3473Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13930 3456..3473 +
1692277594.1394649-UTR-M-pyrifera_M_contig13930:3455..34731692277594.1394649-UTR-M-pyrifera_M_contig13930:3455..3473Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13930 3456..3473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.246097-CDS-M-pyrifera_M_contig13930:3044..34551622815830.246097-CDS-M-pyrifera_M_contig13930:3044..3455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13930 3045..3455 +
1692277594.1315928-CDS-M-pyrifera_M_contig13930:3044..34551692277594.1315928-CDS-M-pyrifera_M_contig13930:3044..3455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13930 3045..3455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13930.6112.1

>prot_M-pyrifera_M_contig13930.6112.1 ID=prot_M-pyrifera_M_contig13930.6112.1|Name=mRNA_M-pyrifera_M_contig13930.6112.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MNCPDVLGSLDLALRLPRDGSVVSLWQKQWRLRKTIHLTLEQKTHQTLSP
HIVRRPSSSCSARASYQCTLSFAKSARSRRTPPEPKHQQSVNGSAFGQVA
FAEGDGTLFARCLDVPDQSTQTTIPLLPPCPHCRTS*
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mRNA from alignment at M-pyrifera_M_contig13930:2667..3473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13930.6112.1 ID=mRNA_M-pyrifera_M_contig13930.6112.1|Name=mRNA_M-pyrifera_M_contig13930.6112.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=807bp|location=Sequence derived from alignment at M-pyrifera_M_contig13930:2667..3473+ (Macrocystis pyrifera P11B4 male)
AGAAAAAACAACATCGCCTGTGTCTTCCGAGGCATTGCAACGGAGGGTCG
AGACTCTTTTCGCTCACGCTGGCGCTAACCGAGGCGCCGGACGCGGGGCT
ATTGGGTCGACATTCGGCCAAGTTCCCTTGACAAGGTAACGGGGGCGGAA
CGTTTGTTCGGTGCTGCTATGTGTCCTAACAAGTACTCTGAACCAAGCCT
TTCCTCTCCTCTCACCTCGCTAATATTTTACAGGGCTGTCCGTCAGTACT
TGCGAATCGGATCGGGTCACCTAACTCGACCCCAATCCGACGGGTGAGAC
TTGGTAAACCCCCTGAACCGACACGACCCGCGAGGATTCGAAGACTCCTG
GCCCAACCAGCGGGTCGGATTATGACCCATGAACTGCCCTGATGTTTTAG
GGTCTCTCGACTTGGCGCTTCGCTTGCCGCGCGACGGCAGTGTAGTTAGT
CTCTGGCAGAAACAGTGGAGACTTCGAAAGACGATCCACCTCACACTAGA
ACAAAAAACACATCAGACCTTATCCCCTCATATCGTCCGTCGACCAAGCT
CGTCATGCAGTGCACGCGCGAGCTATCAGTGTACGCTCTCTTTCGCAAAA
TCAGCCCGCTCTCGTCGGACTCCACCCGAACCGAAGCATCAGCAGTCGGT
GAATGGTTCGGCGTTCGGCCAAGTTGCCTTTGCTGAGGGAGACGGGACGC
TTTTTGCTCGATGCCTCGATGTGCCCGACCAGAGCACTCAAACCACCATA
CCTCTCCTCCCCCCATGCCCACATTGTAGAACCTCTTGACATGGCGCTTG
CCGCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13930:2667..3473+

>mRNA_M-pyrifera_M_contig13930.6112.1 ID=mRNA_M-pyrifera_M_contig13930.6112.1|Name=mRNA_M-pyrifera_M_contig13930.6112.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig13930:2667..3473+ (Macrocystis pyrifera P11B4 male)
ATGAACTGCCCTGATGTTTTAGGGTCTCTCGACTTGGCGCTTCGCTTGCC
GCGCGACGGCAGTGTAGTTAGTCTCTGGCAGAAACAGTGGAGACTTCGAA
AGACGATCCACCTCACACTAGAACAAAAAACACATCAGACCTTATCCCCT
CATATCGTCCGTCGACCAAGCTCGTCATGCAGTGCACGCGCGAGCTATCA
GTGTACGCTCTCTTTCGCAAAATCAGCCCGCTCTCGTCGGACTCCACCCG
AACCGAAGCATCAGCAGTCGGTGAATGGTTCGGCGTTCGGCCAAGTTGCC
TTTGCTGAGGGAGACGGGACGCTTTTTGCTCGATGCCTCGATGTGCCCGA
CCAGAGCACTCAAACCACCATACCTCTCCTCCCCCCATGCCCACATTGTA
GAACCTCTTGAATGAACTGCCCTGATGTTTTAGGGTCTCTCGACTTGGCG
CTTCGCTTGCCGCGCGACGGCAGTGTAGTTAGTCTCTGGCAGAAACAGTG
GAGACTTCGAAAGACGATCCACCTCACACTAGAACAAAAAACACATCAGA
CCTTATCCCCTCATATCGTCCGTCGACCAAGCTCGTCATGCAGTGCACGC
GCGAGCTATCAGTGTACGCTCTCTTTCGCAAAATCAGCCCGCTCTCGTCG
GACTCCACCCGAACCGAAGCATCAGCAGTCGGTGAATGGTTCGGCGTTCG
GCCAAGTTGCCTTTGCTGAGGGAGACGGGACGCTTTTTGCTCGATGCCTC
GATGTGCCCGACCAGAGCACTCAAACCACCATACCTCTCCTCCCCCCATG
CCCACATTGTAGAACCTCTTGA
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