mRNA_M-pyrifera_M_contig1392.6109.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1392.6109.1
Unique NamemRNA_M-pyrifera_M_contig1392.6109.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1392.6109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1392contigM-pyrifera_M_contig1392:26..617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size592
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1392.6109.1prot_M-pyrifera_M_contig1392.6109.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1392 143..442 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.017072-UTR-M-pyrifera_M_contig1392:25..1421622815830.017072-UTR-M-pyrifera_M_contig1392:25..142Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1392 26..142 +
1692277593.9944925-UTR-M-pyrifera_M_contig1392:25..1421692277593.9944925-UTR-M-pyrifera_M_contig1392:25..142Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1392 26..142 +
1622815830.0432522-UTR-M-pyrifera_M_contig1392:442..6171622815830.0432522-UTR-M-pyrifera_M_contig1392:442..617Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1392 443..617 +
1692277594.0205412-UTR-M-pyrifera_M_contig1392:442..6171692277594.0205412-UTR-M-pyrifera_M_contig1392:442..617Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1392 443..617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815830.0306756-CDS-M-pyrifera_M_contig1392:142..4421622815830.0306756-CDS-M-pyrifera_M_contig1392:142..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1392 143..442 +
1692277594.0105574-CDS-M-pyrifera_M_contig1392:142..4421692277594.0105574-CDS-M-pyrifera_M_contig1392:142..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1392 143..442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1392.6109.1

>prot_M-pyrifera_M_contig1392.6109.1 ID=prot_M-pyrifera_M_contig1392.6109.1|Name=mRNA_M-pyrifera_M_contig1392.6109.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MKAPTCLSLTSRMCGTGTSRRKKYIENGTMKGDAHALLARGWVGGRRWGG
LCENRGLTPRSLHLHLARDSPRAGSANPAETFPAKTRAQFLRSSAREGG*
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mRNA from alignment at M-pyrifera_M_contig1392:26..617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1392.6109.1 ID=mRNA_M-pyrifera_M_contig1392.6109.1|Name=mRNA_M-pyrifera_M_contig1392.6109.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=592bp|location=Sequence derived from alignment at M-pyrifera_M_contig1392:26..617+ (Macrocystis pyrifera P11B4 male)
GGACGGGGTAGTAGTTGCACCGAGTGCCGTCCTTTTTTGTCGTCGACATG
ATCTGGACTGTGCACGGGGTGACCGAATAGTAAACTCTTAGGGGACTACA
ACGTCTGGAGTAGCCCAATGAAGGCGCCGACCTGTCTTTCCTTGACCAGC
CGCATGTGCGGGACCGGCACGTCGCGTCGCAAGAAATATATTGAAAATGG
GACGATGAAAGGCGATGCGCACGCCCTTCTGGCGCGGGGCTGGGTAGGCG
GGAGGCGGTGGGGGGGGCTGTGTGAGAATAGAGGGCTTACACCCCGGTCT
CTCCATTTGCACTTGGCGCGCGACTCTCCGCGGGCGGGAAGCGCAAACCC
TGCGGAGACCTTTCCAGCAAAGACGCGCGCGCAATTTTTGCGCTCGAGCG
CTCGAGAGGGAGGATAATCTTCCCCACGTTATGGCTTTTTAGCGGGTACA
ATCCTTAGGGATTTCGGAGGGGAAAGAAAAGGCACGACAGAAACTGCCTA
TCACAGCATAGGCCACTGCTTGCTTGGCCAGGGTTATGACATTTTTTTTT
TGGTGTCCAAATTGCAATGCGAGGAGTCGTGCACGACACGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1392:26..617+

>mRNA_M-pyrifera_M_contig1392.6109.1 ID=mRNA_M-pyrifera_M_contig1392.6109.1|Name=mRNA_M-pyrifera_M_contig1392.6109.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig1392:26..617+ (Macrocystis pyrifera P11B4 male)
ATGAAGGCGCCGACCTGTCTTTCCTTGACCAGCCGCATGTGCGGGACCGG
CACGTCGCGTCGCAAGAAATATATTGAAAATGGGACGATGAAAGGCGATG
CGCACGCCCTTCTGGCGCGGGGCTGGGTAGGCGGGAGGCGGTGGGGGGGG
CTGTGTGAGAATAGAGGGCTTACACCCCGGTCTCTCCATTTGCACTTGGC
GCGCGACTCTCCGCGGGCGGGAAGCGCAAACCCTGCGGAGACCTTTCCAG
CAAAGACGCGCGCGCAATTTTTGCGCTCGAGCGCTCGAGAGGGAGGATAA
ATGAAGGCGCCGACCTGTCTTTCCTTGACCAGCCGCATGTGCGGGACCGG
CACGTCGCGTCGCAAGAAATATATTGAAAATGGGACGATGAAAGGCGATG
CGCACGCCCTTCTGGCGCGGGGCTGGGTAGGCGGGAGGCGGTGGGGGGGG
CTGTGTGAGAATAGAGGGCTTACACCCCGGTCTCTCCATTTGCACTTGGC
GCGCGACTCTCCGCGGGCGGGAAGCGCAAACCCTGCGGAGACCTTTCCAG
CAAAGACGCGCGCGCAATTTTTGCGCTCGAGCGCTCGAGAGGGAGGATAA
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