mRNA_M-pyrifera_M_contig13915.6108.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: D8LTR4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR4_ECTSI) HSP 1 Score: 370 bits (951), Expect = 3.090e-125 Identity = 184/212 (86.79%), Postives = 195/212 (91.98%), Query Frame = 1
Query: 4 SLASGSAQFDEILSQPEADADTPPPPPIELTGPQYVKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLKLGVADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGHLFG 639
SLASGSAQFDEIL PEA+ PPPPIELTGPQYVKTL G+SAPF YFDPL ISSKFRAIDVKKFRESEIKHAR+AMLAFLGMFVQELAHPLF+NGGKD+GPAI HFQAV NYF LMPA+LL+IVGI EGNNIYVGWVKQPLKLGVADLK DYEPG+FGFDPLGL PKDEAG+KAM TKELNNGRLAM+ATIGVWAQELVDGKTI+GHL G
Sbjct: 31 SLASGSAQFDEILQAPEAEE---PPPPIELTGPQYVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLSG 239
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A835Z091_9STRA (Fucoxanthin chlorophyll a/c binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z091_9STRA) HSP 1 Score: 189 bits (481), Expect = 1.170e-54 Identity = 92/177 (51.98%), Postives = 123/177 (69.49%), Query Frame = 1
Query: 106 YVKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLKLG--VADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGH 630
+ + + G++APF +FDP+ SS VKKFRE+E+KH R+AMLAFLG+ +QE HP F+ G DLGPA +H Q V++ F L+ L +G++E I GW K+ + VA+L ++Y PG+ FDPL L PKD AG K M+TKELNNGRLAM+AT+G+W QELVDG+TI GH
Sbjct: 42 FKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGH 218
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A835ZAU2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU2_9STRA) HSP 1 Score: 175 bits (443), Expect = 1.250e-48 Identity = 90/184 (48.91%), Postives = 126/184 (68.48%), Query Frame = 1
Query: 103 QY-VKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELA-HPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLK---LG---VADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGH 630
QY ++ + G++AP ++DPL +++ +++K+RE+E+KH R+AMLA LGM VQE HP F G DLGPA +H Q V + +P +LLV VG +E I GW KQ K LG VA+LK+DY PG+ GFDPLGL P+ E G+++++ KE+NNGRLAM+A G+WAQELVDG ++ H
Sbjct: 45 QYSLQNMSGATAPVPFWDPLGFAAQVDGQELQKYREAELKHGRVAMLACLGMIVQEAGFHPFFGTAGADLGPAAFHLQKVGVNYPTLPLLLLVGVGAVESFTINKGWSKQDYKSSGLGEGFVANLKEDYFPGDLGFDPLGLYPQSEEGRRSIRNKEINNGRLAMIAIWGMWAQELVDGMSLYEH 228
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A836CA40_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA40_9STRA) HSP 1 Score: 171 bits (432), Expect = 5.410e-47 Identity = 86/180 (47.78%), Postives = 120/180 (66.67%), Query Frame = 1
Query: 109 VKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLK---LG---VADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGH 630
++ + G+++P Y+DPL +SK +++K+RE+E+KH R+AMLA LGM VQE HP F G+D+GPA +H Q F+ +P L++ VG++E I GW KQ K LG VA+LK+DY PG+ GFDPLGL P + + ++ KELNNGRLAM+A G+WAQELVD T+ H
Sbjct: 47 LENMSGATSPVPYWDPLGFASKVDDQELQKYREAELKHGRVAMLAALGMIVQENFHPFFNTAGRDIGPAAFHLQKTMEEFSFLPFALVLGVGLVELTTINKGWSKQDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPTNPRERTNIRNKELNNGRLAMIAIWGMWAQELVDHLTLAEH 226
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A7R9U0X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X8_9STRA) HSP 1 Score: 161 bits (407), Expect = 8.420e-44 Identity = 88/172 (51.16%), Postives = 114/172 (66.28%), Query Frame = 1
Query: 109 VKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGW--VKQPLKLG--VADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDG 612
+ ++PGSS+PF FDPL +S+ + +KK++E+E+KH RIAMLA LG+ VQE HPLF GG GPAI+ FQ V+N + L V +EG I GW +++ G VA LK+DY PG+ GFDPLGL PKDEAG M+TKELN+ RLAM+ G+ AQELV G
Sbjct: 33 LSSIPGSSSPFPGFDPLGLSTDLDDMTLKKYQEAELKHGRIAMLAALGILVQESFHPLF--GGAISGPAIFEFQQVDNVYPLFWVAFGTAVAFVEGTTINQGWESIRETKARGADVAGLKEDYTPGDIGFDPLGLCPKDEAGFAEMRTKELNHCRLAMIGVAGMVAQELVLG 202
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A835YMD9_9STRA (Fucoxanthin chlorophyll a/c protein, LI818 clade n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD9_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.110e-43 Identity = 83/180 (46.11%), Postives = 115/180 (63.89%), Query Frame = 1
Query: 109 VKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLK---LG---VADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGH 630
++ + G++AP Y+DP +++K +++K+RE+E+KH R+AMLA LGM VQE HP F G+D+GPA +H Q F +P L+ VG +E I GW + K LG VA+LK+DY PG+ GFDPLGL P + ++ KELNNGRLAM+A G+WAQELVDG + H
Sbjct: 45 LEEMSGATAPVPYWDPAGLAAKVDDQELQKYREAELKHGRVAMLATLGMVVQENFHPFFGTAGRDIGPAAFHLQETMKEFDALPLALVCGVGAVEFLTIDKGWSRSDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPSSPEERTNIRNKELNNGRLAMIAIWGMWAQELVDGLPLAEH 224
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A836CGF9_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF9_9STRA) HSP 1 Score: 160 bits (405), Expect = 1.610e-43 Identity = 80/166 (48.19%), Postives = 113/166 (68.07%), Query Frame = 1
Query: 148 FDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQ-PLKLGVADLKKDYEPGNFGFDPLGLMPKDEAGQ-KAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGHLFG 639
FDPL ++SK I++K+++E E+KH R+AMLA LG V E+ HPLF ++GP+I HFQ +E + + +G+ E +NIY GWVKQ P++ G+A LK +Y G+FGFDPL L P E + + M+ KELNNGRLAM A +G+WAQELV+GK + ++ G
Sbjct: 48 FDPLGLASKVSDIELKRYQECELKHGRVAMLAVLGSLVAEVFHPLFPMS-FEIGPSIRHFQIIEREVPYFWILAMFGIGVFEADNIYRGWVKQDPIRDGIASLKDNYIVGDFGFDPLNLGPTSEPQKFELMRAKELNNGRLAMFAILGIWAQELVNGKGVFENILG 212
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 155 bits (391), Expect = 2.620e-41 Identity = 91/184 (49.46%), Postives = 113/184 (61.41%), Query Frame = 1
Query: 97 GPQYVKTLPGSSAPF---EYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKD-LGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLKLGVADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGHLF 636
G YV TLPG APF + FDPL++S D+KK+RE+EIKH R+AMLA LG+ V E HPLF GKD +GPAI HFQ + F A L+ + +E N I + G LK+DY PG+ GFDPL L P EA MKTKELNNGRLAM+ G+ AQELV+G+ I+ + F
Sbjct: 44 GSDYVATLPG--APFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFM--GKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFF 223
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A7S3YG15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG15_HETAK) HSP 1 Score: 154 bits (390), Expect = 4.620e-41 Identity = 88/197 (44.67%), Postives = 116/197 (58.88%), Query Frame = 1
Query: 37 ILSQPEADADTPPPPPIELTGPQYVKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGW--VKQPLKLGVADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTI 621
+LS+ ++D PI++ V+ LPG P +FDPL IS +KKFRE+E+KH RIAMLA +G+ + E +PLF GK LG IYHFQ + I+L + ++EG I W V+ +ADL+ DYEPG+ GFDPLGL P D A M+TKEL NGRLAML G+ AQEL+ G+ I
Sbjct: 43 VLSRKKSDM------PIKMA---LVEDLPGVLPPVGFFDPLGISQGKNENAIKKFREAELKHGRIAMLASVGILLAERFNPLFD--GKILGAGIYHFQQADQLLPYFWVIVLFAIALIEGQTILTAWDSVEDSQNKPIADLRADYEPGDLGFDPLGLAPSDPAALAEMRTKELQNGRLAMLGIAGIVAQELLTGQPI 228
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A836BYJ1_9CHLO (Chlorophyll a-b binding protein, chloroplastic n=4 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BYJ1_9CHLO) HSP 1 Score: 154 bits (390), Expect = 9.010e-41 Identity = 91/192 (47.40%), Postives = 117/192 (60.94%), Query Frame = 1
Query: 73 PPPPIELTGPQYVKTLPGSSAPFE-YFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAH--PLFQN-GGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLKLGVADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGHLF 636
P P +E +Y+KT PG SAPF+ FDP ++ D+K++RESEI H R++MLA LG V E PLF N G+ GPAIYHFQ + F P LL+ +G+ E + V W P G LK +YEPG GFDPL L+P+DEA +K ++TKE+NNGRLAM+A AQELV+ I HLF
Sbjct: 37 PVPAVEQDAYEYLKTCPGVSAPFDNVFDPAGLARTTNLRDLKRWRESEIVHGRVSMLAALGFIVGEQLQDFPLFFNFDGRVEGPAIYHFQQIGQGF-WEP--LLIFIGVAESYRVAVAWAT-PTGTGFNALKDEYEPGYLGFDPLNLLPEDEAARKELQTKEINNGRLAMIAIAAFVAQELVEQTEIFEHLF 224 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig13915.6108.1 >prot_M-pyrifera_M_contig13915.6108.1 ID=prot_M-pyrifera_M_contig13915.6108.1|Name=mRNA_M-pyrifera_M_contig13915.6108.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp MLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGback to top mRNA from alignment at M-pyrifera_M_contig13915:3276..7190- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig13915.6108.1 ID=mRNA_M-pyrifera_M_contig13915.6108.1|Name=mRNA_M-pyrifera_M_contig13915.6108.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3915bp|location=Sequence derived from alignment at M-pyrifera_M_contig13915:3276..7190- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig13915:3276..7190- >mRNA_M-pyrifera_M_contig13915.6108.1 ID=mRNA_M-pyrifera_M_contig13915.6108.1|Name=mRNA_M-pyrifera_M_contig13915.6108.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig13915:3276..7190- (Macrocystis pyrifera P11B4 male)back to top |