mRNA_M-pyrifera_M_contig13915.6108.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13915.6108.1
Unique NamemRNA_M-pyrifera_M_contig13915.6108.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: D8LTR4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR4_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 3.090e-125
Identity = 184/212 (86.79%), Postives = 195/212 (91.98%), Query Frame = 1
Query:    4 SLASGSAQFDEILSQPEADADTPPPPPIELTGPQYVKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLKLGVADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGHLFG 639
            SLASGSAQFDEIL  PEA+    PPPPIELTGPQYVKTL G+SAPF YFDPL ISSKFRAIDVKKFRESEIKHAR+AMLAFLGMFVQELAHPLF+NGGKD+GPAI HFQAV NYF LMPA+LL+IVGI EGNNIYVGWVKQPLKLGVADLK DYEPG+FGFDPLGL PKDEAG+KAM TKELNNGRLAM+ATIGVWAQELVDGKTI+GHL G
Sbjct:   31 SLASGSAQFDEILQAPEAEE---PPPPIELTGPQYVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLSG 239          
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A835Z091_9STRA (Fucoxanthin chlorophyll a/c binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z091_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.170e-54
Identity = 92/177 (51.98%), Postives = 123/177 (69.49%), Query Frame = 1
Query:  106 YVKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLKLG--VADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGH 630
            + + + G++APF +FDP+  SS      VKKFRE+E+KH R+AMLAFLG+ +QE  HP F+ G  DLGPA +H Q V++ F L+   L   +G++E   I  GW K+  +    VA+L ++Y PG+  FDPL L PKD AG K M+TKELNNGRLAM+AT+G+W QELVDG+TI GH
Sbjct:   42 FKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGH 218          
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A835ZAU2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU2_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.250e-48
Identity = 90/184 (48.91%), Postives = 126/184 (68.48%), Query Frame = 1
Query:  103 QY-VKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELA-HPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLK---LG---VADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGH 630
            QY ++ + G++AP  ++DPL  +++    +++K+RE+E+KH R+AMLA LGM VQE   HP F   G DLGPA +H Q V   +  +P +LLV VG +E   I  GW KQ  K   LG   VA+LK+DY PG+ GFDPLGL P+ E G+++++ KE+NNGRLAM+A  G+WAQELVDG ++  H
Sbjct:   45 QYSLQNMSGATAPVPFWDPLGFAAQVDGQELQKYREAELKHGRVAMLACLGMIVQEAGFHPFFGTAGADLGPAAFHLQKVGVNYPTLPLLLLVGVGAVESFTINKGWSKQDYKSSGLGEGFVANLKEDYFPGDLGFDPLGLYPQSEEGRRSIRNKEINNGRLAMIAIWGMWAQELVDGMSLYEH 228          
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A836CA40_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA40_9STRA)

HSP 1 Score: 171 bits (432), Expect = 5.410e-47
Identity = 86/180 (47.78%), Postives = 120/180 (66.67%), Query Frame = 1
Query:  109 VKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLK---LG---VADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGH 630
            ++ + G+++P  Y+DPL  +SK    +++K+RE+E+KH R+AMLA LGM VQE  HP F   G+D+GPA +H Q     F+ +P  L++ VG++E   I  GW KQ  K   LG   VA+LK+DY PG+ GFDPLGL P +   +  ++ KELNNGRLAM+A  G+WAQELVD  T+  H
Sbjct:   47 LENMSGATSPVPYWDPLGFASKVDDQELQKYREAELKHGRVAMLAALGMIVQENFHPFFNTAGRDIGPAAFHLQKTMEEFSFLPFALVLGVGLVELTTINKGWSKQDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPTNPRERTNIRNKELNNGRLAMIAIWGMWAQELVDHLTLAEH 226          
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A7R9U0X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X8_9STRA)

HSP 1 Score: 161 bits (407), Expect = 8.420e-44
Identity = 88/172 (51.16%), Postives = 114/172 (66.28%), Query Frame = 1
Query:  109 VKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGW--VKQPLKLG--VADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDG 612
            + ++PGSS+PF  FDPL +S+    + +KK++E+E+KH RIAMLA LG+ VQE  HPLF  GG   GPAI+ FQ V+N + L        V  +EG  I  GW  +++    G  VA LK+DY PG+ GFDPLGL PKDEAG   M+TKELN+ RLAM+   G+ AQELV G
Sbjct:   33 LSSIPGSSSPFPGFDPLGLSTDLDDMTLKKYQEAELKHGRIAMLAALGILVQESFHPLF--GGAISGPAIFEFQQVDNVYPLFWVAFGTAVAFVEGTTINQGWESIRETKARGADVAGLKEDYTPGDIGFDPLGLCPKDEAGFAEMRTKELNHCRLAMIGVAGMVAQELVLG 202          
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A835YMD9_9STRA (Fucoxanthin chlorophyll a/c protein, LI818 clade n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD9_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.110e-43
Identity = 83/180 (46.11%), Postives = 115/180 (63.89%), Query Frame = 1
Query:  109 VKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLK---LG---VADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGH 630
            ++ + G++AP  Y+DP  +++K    +++K+RE+E+KH R+AMLA LGM VQE  HP F   G+D+GPA +H Q     F  +P  L+  VG +E   I  GW +   K   LG   VA+LK+DY PG+ GFDPLGL P     +  ++ KELNNGRLAM+A  G+WAQELVDG  +  H
Sbjct:   45 LEEMSGATAPVPYWDPAGLAAKVDDQELQKYREAELKHGRVAMLATLGMVVQENFHPFFGTAGRDIGPAAFHLQETMKEFDALPLALVCGVGAVEFLTIDKGWSRSDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPSSPEERTNIRNKELNNGRLAMIAIWGMWAQELVDGLPLAEH 224          
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A836CGF9_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF9_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.610e-43
Identity = 80/166 (48.19%), Postives = 113/166 (68.07%), Query Frame = 1
Query:  148 FDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQ-PLKLGVADLKKDYEPGNFGFDPLGLMPKDEAGQ-KAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGHLFG 639
            FDPL ++SK   I++K+++E E+KH R+AMLA LG  V E+ HPLF     ++GP+I HFQ +E        + +  +G+ E +NIY GWVKQ P++ G+A LK +Y  G+FGFDPL L P  E  + + M+ KELNNGRLAM A +G+WAQELV+GK +  ++ G
Sbjct:   48 FDPLGLASKVSDIELKRYQECELKHGRVAMLAVLGSLVAEVFHPLFPMS-FEIGPSIRHFQIIEREVPYFWILAMFGIGVFEADNIYRGWVKQDPIRDGIASLKDNYIVGDFGFDPLNLGPTSEPQKFELMRAKELNNGRLAMFAILGIWAQELVNGKGVFENILG 212          
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 2.620e-41
Identity = 91/184 (49.46%), Postives = 113/184 (61.41%), Query Frame = 1
Query:   97 GPQYVKTLPGSSAPF---EYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKD-LGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLKLGVADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGHLF 636
            G  YV TLPG  APF   + FDPL++S      D+KK+RE+EIKH R+AMLA LG+ V E  HPLF   GKD +GPAI HFQ +   F    A  L+ +  +E N I   +       G   LK+DY PG+ GFDPL L P  EA    MKTKELNNGRLAM+   G+ AQELV+G+ I+ + F
Sbjct:   44 GSDYVATLPG--APFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFM--GKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFF 223          
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A7S3YG15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG15_HETAK)

HSP 1 Score: 154 bits (390), Expect = 4.620e-41
Identity = 88/197 (44.67%), Postives = 116/197 (58.88%), Query Frame = 1
Query:   37 ILSQPEADADTPPPPPIELTGPQYVKTLPGSSAPFEYFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGW--VKQPLKLGVADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTI 621
            +LS+ ++D       PI++     V+ LPG   P  +FDPL IS       +KKFRE+E+KH RIAMLA +G+ + E  +PLF   GK LG  IYHFQ  +        I+L  + ++EG  I   W  V+      +ADL+ DYEPG+ GFDPLGL P D A    M+TKEL NGRLAML   G+ AQEL+ G+ I
Sbjct:   43 VLSRKKSDM------PIKMA---LVEDLPGVLPPVGFFDPLGISQGKNENAIKKFREAELKHGRIAMLASVGILLAERFNPLFD--GKILGAGIYHFQQADQLLPYFWVIVLFAIALIEGQTILTAWDSVEDSQNKPIADLRADYEPGDLGFDPLGLAPSDPAALAEMRTKELQNGRLAMLGIAGIVAQELLTGQPI 228          
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Match: A0A836BYJ1_9CHLO (Chlorophyll a-b binding protein, chloroplastic n=4 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BYJ1_9CHLO)

HSP 1 Score: 154 bits (390), Expect = 9.010e-41
Identity = 91/192 (47.40%), Postives = 117/192 (60.94%), Query Frame = 1
Query:   73 PPPPIELTGPQYVKTLPGSSAPFE-YFDPLAISSKFRAIDVKKFRESEIKHARIAMLAFLGMFVQELAH--PLFQN-GGKDLGPAIYHFQAVENYFALMPAILLVIVGIMEGNNIYVGWVKQPLKLGVADLKKDYEPGNFGFDPLGLMPKDEAGQKAMKTKELNNGRLAMLATIGVWAQELVDGKTIIGHLF 636
            P P +E    +Y+KT PG SAPF+  FDP  ++      D+K++RESEI H R++MLA LG  V E     PLF N  G+  GPAIYHFQ +   F   P  LL+ +G+ E   + V W   P   G   LK +YEPG  GFDPL L+P+DEA +K ++TKE+NNGRLAM+A     AQELV+   I  HLF
Sbjct:   37 PVPAVEQDAYEYLKTCPGVSAPFDNVFDPAGLARTTNLRDLKRWRESEIVHGRVSMLAALGFIVGEQLQDFPLFFNFDGRVEGPAIYHFQQIGQGF-WEP--LLIFIGVAESYRVAVAWAT-PTGTGFNALKDEYEPGYLGFDPLNLLPEDEAARKELQTKEINNGRLAMIAIAAFVAQELVEQTEIFEHLF 224          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13915.6108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTR4_ECTSI3.090e-12586.79Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835Z091_9STRA1.170e-5451.98Fucoxanthin chlorophyll a/c binding protein n=1 Ta... [more]
A0A835ZAU2_9STRA1.250e-4848.91Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A836CA40_9STRA5.410e-4747.78Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A7R9U0X8_9STRA8.420e-4451.16Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A835YMD9_9STRA1.110e-4346.11Fucoxanthin chlorophyll a/c protein, LI818 clade n... [more]
A0A836CGF9_9STRA1.610e-4348.19Light harvesting complex protein n=1 Tax=Tribonema... [more]
D7G7Q9_ECTSI2.620e-4149.46Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A7S3YG15_HETAK4.620e-4144.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836BYJ1_9CHLO9.010e-4147.40Chlorophyll a-b binding protein, chloroplastic n=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13915contigM-pyrifera_M_contig13915:3276..7190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.6
Seed ortholog evalue2.6e-65
Seed eggNOG ortholog2880.D8LTR4
Preferred nameLI818R
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2A0A8@1,2RXY6@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-28_003120.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1244
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13915.6108.1prot_M-pyrifera_M_contig13915.6108.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13915 3878..5706 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815829.9183865-UTR-M-pyrifera_M_contig13915:3275..38771622815829.9183865-UTR-M-pyrifera_M_contig13915:3275..3877Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13915 3276..3877 -
1692277593.9371443-UTR-M-pyrifera_M_contig13915:3275..38771692277593.9371443-UTR-M-pyrifera_M_contig13915:3275..3877Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13915 3276..3877 -
1622815829.9638023-UTR-M-pyrifera_M_contig13915:5706..57661622815829.9638023-UTR-M-pyrifera_M_contig13915:5706..5766Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13915 5707..5766 -
1692277593.9727967-UTR-M-pyrifera_M_contig13915:5706..57661692277593.9727967-UTR-M-pyrifera_M_contig13915:5706..5766Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13915 5707..5766 -
1622815829.9815311-UTR-M-pyrifera_M_contig13915:7016..71901622815829.9815311-UTR-M-pyrifera_M_contig13915:7016..7190Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13915 7017..7190 -
1692277593.9825547-UTR-M-pyrifera_M_contig13915:7016..71901692277593.9825547-UTR-M-pyrifera_M_contig13915:7016..7190Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13915 7017..7190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815829.9357946-CDS-M-pyrifera_M_contig13915:3877..41101622815829.9357946-CDS-M-pyrifera_M_contig13915:3877..4110Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13915 3878..4110 -
1692277593.9483385-CDS-M-pyrifera_M_contig13915:3877..41101692277593.9483385-CDS-M-pyrifera_M_contig13915:3877..4110Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13915 3878..4110 -
1622815829.9488738-CDS-M-pyrifera_M_contig13915:5531..57061622815829.9488738-CDS-M-pyrifera_M_contig13915:5531..5706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13915 5532..5706 -
1692277593.957374-CDS-M-pyrifera_M_contig13915:5531..57061692277593.957374-CDS-M-pyrifera_M_contig13915:5531..5706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13915 5532..5706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13915.6108.1

>prot_M-pyrifera_M_contig13915.6108.1 ID=prot_M-pyrifera_M_contig13915.6108.1|Name=mRNA_M-pyrifera_M_contig13915.6108.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
MLAFLGMFVQELAHPLFQNGGKDLGPAIYHFQAVENYFALMPAILLVIVG
IMEGNNIYVGWVKQPLKLGVADLKKDYEPGNFGFDPLGLMPKDEAGQKAM
KTKELNNGRLAMLATIGVWAQELVDGKTIIGHLFG*
back to top

mRNA from alignment at M-pyrifera_M_contig13915:3276..7190-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13915.6108.1 ID=mRNA_M-pyrifera_M_contig13915.6108.1|Name=mRNA_M-pyrifera_M_contig13915.6108.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3915bp|location=Sequence derived from alignment at M-pyrifera_M_contig13915:3276..7190- (Macrocystis pyrifera P11B4 male)
TCTTCCCTGGCGTCTGGGTCTGCCCAATTCGACGAAATTTTGTCGCAGCC TGAGGCAGACGCAGACACCCCTCCGCCGCCGCCGATCGAGCTGACCGGGC CTCAGTACGTCAAGACGCTCCCGGGTTCGAGCGCACCGTTCGAGTACTTT GACCCCCTAGCGATATCGTCCAAGGTGTGTAACATTATCCAAGCAGCAGA TGCCTAGCATATCGTGTGCCTCGAAGGTGCAATTCACACTAAACTCAAGA GTAAATAATATACAGGGCATTTATTTCACCCACCACTTAGATCTCCTCTC ATGGTTACCAGGTATATGTTTGTGTTGAAACCGGAATATATTTTAGAAAG CTCAGCGCCATCATAATTGTTACCACACTTCTGTACGAGTAGTTTTGTCA TCGTTACATATGACACTCTTCCAAAGGACGAGGGGGGGAGGGGGGGGGGG TACTCATTATCATGCATGGCCGGATTCGCATGATCATATACCCTCGCATC CCTACAATGCCGGGACGAAGCACGTCGGGTCTTCACCGACCAGGGGGGGG GGGCTTTTACATCGAAAAAACGTGCGAAAACGTGCGCAGTACGTATTTCG TTGAAGGTTTTTACGTCTGTACGTTCTCGCACATACAACCCTTTCAGTAC CGCAGTGTGCATGCACTCAAGTCGGACTCTAATTCCGCGTGCTCTGTCCC CACAACGGGACTGCAGTTCTAAAGGAGTTGAAGTACTGCAGTACCACCCG GTACGTACTCGTGGTGCAGGTTTTGGGATTACTTTAGCGTCAAAAAATCG TCGGAGTTGATACATCTACCAATGTTGATTGTGTTAATATCATACAACTC TGAGCGTAAGTATAAGGACCGTTCGAGTATAAATATAGACCAGATGATAT TCGTTTTCCCGCGCAGAGTAGTGACACAGCAGCAGTAGTAGACTGTGATG TCAATGGTGCAGGGATAAATTTTGGGGAAAAACTCGATCTCACAGCGAAG ATGGTTTTTCCGAAATGACACAGCTTTTGGTTTTTCACTTTTTCCAAATG TTTTCTCACCCAAGTTGCGCACTGTCAATTTTTCCCCCTTCAATGGAGTT GTCTATATCCCCATGATCAAGTTATACAAAACCGCGCGATCTCAAGAGAA TCGCGCACAGCTTGTAGCAGACGAGTCGTGACGAGCAGAGTAGACAATGC AATGCCATGTCATCATACTGGATAGGTACGGCATACACATTCTATAAGAG AGAAAACAAAATTAGCTAATGCGAAAGCACAAGTTGGCAAACGCCTCCTT CCCCCCCATCCCCACTCTGTCACAAAAAAACACCTCCGCCTACTCCTCCT TCACAGTTCCGCGCCATCGAACCCTCCCCACTCGACGTCACAAAAAAAAA CCTCCGCCTACTCCTCCTCCACAGTTCCGCGCCATCGATGTGAAGAAATT CCGCGAGAGCGAGATCAAGCACGCCCGCATTGCGATGCTCGCCTTCCTGG GCATGTTCGTCCAGGAACTAGCCCACCCCCTCTTCCAGAACGGGGGCAAG GACCTCGGGCCGGCCATCTACCACTTCCAGGCGGTCGAGAACTACTTCGC GCTTATGCCCGCGATTTTGCTGGTCATCGTCGGTATCATGGAGGGGAACA ACATTTACGGTGCGTCGTTGTTGTTGCTGCATGAACACAAAGGTATCGAC CTACCTACGAATAAGATAATGAGGCCTCACTTTTCGGGGACGCTTAATCC TTGTAGGGCAACCTGCAGTCCCGTTTTGGGGAACGAACTGATCGGAATTT GAGTTGTTTTCCCCCCCAAAACAAACTTGTTGGAATTTGAGTTGTTTTGT TCCCCAAAACGAGACTGCAGTACTAAAAGGGTTGAGGAAAAGGGATTGGT AATAAATCATGCTCAGCGGCGAGCGCTCCACTGAATCTTGCGTAGTAGCC TATGATGCTCAAAGGTTGGTGAAGGATGGTATCAACATGTTTCGTAGATA TCTAGTCGAAAACGTCAAGGGACCGGTAAATCTCCGATCTCGCATCAGTT ACTCTGACAGTCCCCCCGATGTATGTATCAGTAGATCGCATTAGGAAAAA TGATGTAGATCTAGCGGGTCATGCGGATCCCACCTGTATTCTCACCTGTA CAAACATGTTAACAAATATCTAGATTGCATAGATCCCACCCGCACTAAAT TGTTCTAGATCCATCAAAACCTATAAATCATTTTTGGCGAGATGACCCAG ATCATGCAGATCCTATGGATCGCACCCGGTCAACTTGTGTGAAAGAGCCG TCTGGTACAGATCCCACCTAGGGAACATGTGTGCAAGGATTATTAATATA TGTTGTAGATCCCACCCGGACAAACATATGCTACTGTAGATCATGCAGAT CCCATAGATCCAAAAATAAAGGATGTAGATCATGCAGATGCCAGATCCCG AAAATGAAGGATCTAGATCATGCAGATCCCATTATCCAAAAATGAAGAAG ATAGATTACAAACCCCATATATCATGGATGTGTCTGTCCAAAATGGTCAA CAATAGATCAAGTACAACGGATCTGATCTGTCCGACGTGTGCAATGTTGC ACACAGATCACGATGTATATCATCTAGATCTTAACCTGCCGTCACCTTAT GTTGTGGAGAATCTGTTTAGTACGTACCCAACCAAGGAAACGAGTTCTAG ATAATGCAGACTAAACGGCTCCCACCCGGCAACTTGAGCTAACTGGCGTG TGCAATTTGGATGGTAGGCCCCAAACTTCATTCTCTGTGATAACGTACCA CTCTGTGCTTGAAAGTATAGACCGCTCTAGTGCTTGTATCAAATCTAACC GATCCGTATATCCCGGGACAGACTGGTAGCATGGCTCGTCGTCAATGCCG TCATCTTTGAGGGGCTGAACATGAAACTGATATTGAGGTTGAGATTAAAA TTGGGATCCAAGATTCAAATTGAGATTAGGACGCAGATTGGGATTGGGAT CGGGATCGAACTTGAGCTTAACAATGACCCTCTCCCCCTCCCCCTCCCGC CGCGTCTCTTCTTCACTTATCGGTTCGCAGTGGGGTGGGTGAAGCAGCCC CTGAAACTCGGCGTTGCGGACCTAAAGAAGGACTACGAACCGGGAAACTT CGGGTTCGACCCCCTGGGCCTTATGCCCAAGGACGAGGCAGGGCAAAAAG CAATGAAGACCAAGGAGCTCAACAACGGGCGGCTAGCGATGCTCGCGACG ATCGGCGTATGGGCGCAGGAGCTTGTGGATGGCAAGACTATCATTGGACA CCTCTTTGGATAGGCTCGAATAGGATCGAAAATATATACCACGTCGCTAG GTGTTGGGGCTGGCGTTGGCTGACCGTTTTTATTTTCGTTTTCAAAGCAG TTTGACTGTGTGCTATTTAGCTCAATTTAGTTTCTGGATGAAGTTAATTT ATGGTGGTAGCTTGTATGTACAAGAGGGAGTAAGGTGGCGGCGGCTGATG GGCTGATCCCCTCTTGCTTACGTCATCAAGTTGGCGTTGGCTCTTTGTTT CTGCCTCGAGTTGGTGGTGGCTTGTGCTGTACAACTTTGGCGGTGACGAC TGCTTCGGGAGAAAGTGTGGTGTTCGGTTCGACGTCTGGAGCACGTCATA GGGGCTACCGCTGCTGACGTCCACCCGGCCCATCTTTTCCTCGTTGGAGA CGTTTCAGCTGCTTATGCCCAGTCCCCGGCTAAAAACCTCGATGGCGACT CTAGAAGTCTAATTTCAAGCATTTTTTTCTCAAATGTGGGCGCGGGCACC AGCGCTGAAGAGGTTTTACGTCATTTGTTCGAGGTGACGTATTAATATGT AAAAGACATTTCGTGCCCGCAGTTTTCTGGTTTTCTACCAATGAAGAAAA ACGACGTGAAAAATG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13915:3276..7190-

>mRNA_M-pyrifera_M_contig13915.6108.1 ID=mRNA_M-pyrifera_M_contig13915.6108.1|Name=mRNA_M-pyrifera_M_contig13915.6108.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig13915:3276..7190- (Macrocystis pyrifera P11B4 male)
ATGCTCGCCTTCCTGGGCATGTTCGTCCAGGAACTAGCCCACCCCCTCTT
CCAGAACGGGGGCAAGGACCTCGGGCCGGCCATCTACCACTTCCAGGCGG
TCGAGAACTACTTCGCGCTTATGCCCGCGATTTTGCTGGTCATCGTCGGT
ATCATGGAGGGGAACAACATTTACGATGCTCGCCTTCCTGGGCATGTTCG
TCCAGGAACTAGCCCACCCCCTCTTCCAGAACGGGGGCAAGGACCTCGGG
CCGGCCATCTACCACTTCCAGGCGGTCGAGAACTACTTCGCGCTTATGCC
CGCGATTTTGCTGGTCATCGTCGGTATCATGGAGGGGAACAACATTTACG
TGGGGTGGGTGAAGCAGCCCCTGAAACTCGGCGTTGCGGACCTAAAGAAG
GACTACGAACCGGGAAACTTCGGGTTCGACCCCCTGGGCCTTATGCCCAA
GGACGAGGCAGGGCAAAAAGCAATGAAGACCAAGGAGCTCAACAACGGGC
GGCTAGCGATGCTCGCGACGATCGGCGTATGGGCGCAGGAGCTTGTGGAT
GGCAAGACTATCATTGGACACCTCTTTGGATAGTGGGGTGGGTGAAGCAG
CCCCTGAAACTCGGCGTTGCGGACCTAAAGAAGGACTACGAACCGGGAAA
CTTCGGGTTCGACCCCCTGGGCCTTATGCCCAAGGACGAGGCAGGGCAAA
AAGCAATGAAGACCAAGGAGCTCAACAACGGGCGGCTAGCGATGCTCGCG
ACGATCGGCGTATGGGCGCAGGAGCTTGTGGATGGCAAGACTATCATTGG
ACACCTCTTTGGATAG
back to top