mRNA_M-pyrifera_M_contig13911.6106.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13911.6106.1
Unique NamemRNA_M-pyrifera_M_contig13911.6106.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13911.6106.1 vs. uniprot
Match: D7G6X6_ECTSI (RL10P_insert domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X6_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.980e-56
Identity = 93/100 (93.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNRKGRELKQGIVSEVRKCVDEYPTLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMILALGKSEQDEYQDNLRQISKRLKGQ 300
            MPRSQRNQKVSLTKT++KGRELKQGIVSEVRKCVDEYP++YVFSFVNLRSKLLKEVR+DFR+DSRFFMGKNKVMILALGKSEQDEYQDNLRQ+SKRLKGQ
Sbjct:    1 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQ 100
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BLAST of mRNA_M-pyrifera_M_contig13911.6106.1 vs. uniprot
Match: UPI000A2A4B7E (mRNA turnover protein 4 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4B7E)

HSP 1 Score: 121 bits (304), Expect = 8.790e-33
Identity = 61/100 (61.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNRKGRELKQGIVSEVRKCVDEYPTLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMILALGKSEQDEYQDNLRQISKRLKGQ 300
            MP+S+RN+ VSLT+T +KG E K G++ E+++CVD+Y +LYVFS  N+R+  LK+VR  + K SRFF GKNKVMI+ALGKS +DEY++NLR++SKRLKGQ
Sbjct:    1 MPKSKRNKIVSLTRTKKKGLETKSGLIKEIQECVDQYKSLYVFSVENMRNSKLKDVREXW-KHSRFFFGKNKVMIIALGKSAEDEYKENLREVSKRLKGQ 99
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BLAST of mRNA_M-pyrifera_M_contig13911.6106.1 vs. uniprot
Match: A0A6P8HBI4_ACTTE (Ribosome assembly factor mrt4 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HBI4_ACTTE)

HSP 1 Score: 118 bits (296), Expect = 2.730e-31
Identity = 60/100 (60.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNRKGRELKQGIVSEVRKCVDEYPTLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMILALGKSEQDEYQDNLRQISKRLKGQ 300
            MP+S+RN+ VSLT+T +KG E K G+V EV+ C+DEY  +YVFS  N+R+  LK+VR ++ K SRFF GKNKVMI+ALGK+ +DEY++NL ++SKRLKGQ
Sbjct:    1 MPKSKRNKIVSLTRTKKKGLETKSGLVKEVQDCIDEYKDIYVFSVENMRNSKLKDVREEW-KHSRFFFGKNKVMIIALGKTPEDEYRENLHELSKRLKGQ 99
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BLAST of mRNA_M-pyrifera_M_contig13911.6106.1 vs. uniprot
Match: UPI0012D4060C (mRNA turnover protein 4 homolog n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D4060C)

HSP 1 Score: 118 bits (295), Expect = 6.960e-31
Identity = 56/100 (56.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNRKGRELKQGIVSEVRKCVDEYPTLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMILALGKSEQDEYQDNLRQISKRLKGQ 300
            MPR++R++K+SLTKT+RKG + KQ IV ++R CV +YP +Y+FS  N+R+ LLK++R +++KD+RF  GKN+VM LALG+SE+DE   +L ++SKRLKGQ
Sbjct:    1 MPRAKRDKKISLTKTDRKGLQWKQQIVEDIRSCVQKYPNIYLFSVQNMRNNLLKDLRSEWKKDARFIFGKNRVMQLALGRSEEDEVDSDLHKLSKRLKGQ 100
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BLAST of mRNA_M-pyrifera_M_contig13911.6106.1 vs. uniprot
Match: A0A835Z2W2_9STRA (Ribosome assembly factor mrt4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.010e-30
Identity = 56/100 (56.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNRKGRELKQGIVSEVRKCVDEYPTLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMILALGKSEQDEYQDNLRQISKRLKGQ 300
            MP+S+RN+ VSLT T +KGR LKQ ++ ++R  +D +  L+VF + N+RS+L+K+VR+DFR DSRFFMGKN +M  ALG S +DEY DNLRQ+S+ ++GQ
Sbjct:    1 MPKSKRNKTVSLTSTAKKGRTLKQAVIKDIRDHIDSHQRLFVFRYDNMRSRLMKDVRLDFRGDSRFFMGKNTIMQRALGTSVEDEYSDNLRQVSRHIRGQ 100
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BLAST of mRNA_M-pyrifera_M_contig13911.6106.1 vs. uniprot
Match: UPI001EE2E93E (mRNA turnover protein 4 homolog n=1 Tax=Equus quagga TaxID=89248 RepID=UPI001EE2E93E)

HSP 1 Score: 114 bits (285), Expect = 1.790e-30
Identity = 57/100 (57.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNRKGRELKQGIVSEVRKCVDEYPTLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMILALGKSEQDEYQDNLRQISKRLKGQ 300
            MP+S+R++KVSLTKT +KG ELKQ ++ E+RKCVD Y  L++FS  N+R+  LK++R  + K SR F GKNKVM++ALG+S  DEY+DNL Q+SK+L+G+
Sbjct:    1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW-KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGE 99
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BLAST of mRNA_M-pyrifera_M_contig13911.6106.1 vs. uniprot
Match: A0A7J8A980_PIPKU (MRT4-like protein, ribosome maturation factor n=1 Tax=Pipistrellus kuhlii TaxID=59472 RepID=A0A7J8A980_PIPKU)

HSP 1 Score: 114 bits (284), Expect = 2.400e-30
Identity = 57/100 (57.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNRKGRELKQGIVSEVRKCVDEYPTLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMILALGKSEQDEYQDNLRQISKRLKGQ 300
            MP+S+R++KVSLTKT +KG ELKQ ++ E+RKCVD Y  L++FS  N+R+  LK++R  + K SR F GKNKVM++ALG+S  DEY+DNL Q+SK+L+G+
Sbjct:    1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW-KHSRMFFGKNKVMMVALGRSPADEYKDNLHQVSKKLRGE 99
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BLAST of mRNA_M-pyrifera_M_contig13911.6106.1 vs. uniprot
Match: A7T1P1_NEMVE (Ribosome assembly factor mrt4 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7T1P1_NEMVE)

HSP 1 Score: 115 bits (289), Expect = 3.080e-30
Identity = 60/100 (60.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNRKGRELKQGIVSEVRKCVDEYPTLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMILALGKSEQDEYQDNLRQISKRLKGQ 300
            MP+S+RN+ VSLT+T +KG ELK G+V EV++CVDEY  +YVFS  N+R+  LK+ R  + K SRFF GKNKVM +ALGK+ +DEY++NL ++SKRLKGQ
Sbjct:    1 MPKSKRNKIVSLTRTKKKGLELKSGLVKEVQECVDEYAFVYVFSVENMRNSKLKDAREKW-KQSRFFFGKNKVMAIALGKTPEDEYKENLCEVSKRLKGQ 99
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BLAST of mRNA_M-pyrifera_M_contig13911.6106.1 vs. uniprot
Match: A0A7R8V4G0_HERIL (Ribosome assembly factor mrt4 n=2 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8V4G0_HERIL)

HSP 1 Score: 116 bits (291), Expect = 3.260e-30
Identity = 53/100 (53.00%), Postives = 85/100 (85.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNRKGRELKQGIVSEVRKCVDEYPTLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMILALGKSEQDEYQDNLRQISKRLKGQ 300
            MPRS+R++K+SLTKT+RKG   KQ IV ++R C+++YP+++VFS  N+R+ LLK++R +F+KDSRFF GKN++M L LG+S+++E++ +L ++SKR++GQ
Sbjct:    1 MPRSKRDKKISLTKTDRKGLAWKQHIVEDIRNCLNKYPSVFVFSVKNMRNNLLKDLRQEFKKDSRFFFGKNRIMQLGLGRSKEEEFERDLYKVSKRIEGQ 100
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BLAST of mRNA_M-pyrifera_M_contig13911.6106.1 vs. uniprot
Match: UPI000154CE35 (Uncharacterized protein n=1 Tax=Mus musculus TaxID=10090 RepID=UPI000154CE35)

HSP 1 Score: 114 bits (285), Expect = 3.320e-30
Identity = 57/100 (57.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 MPRSQRNQKVSLTKTNRKGRELKQGIVSEVRKCVDEYPTLYVFSFVNLRSKLLKEVRMDFRKDSRFFMGKNKVMILALGKSEQDEYQDNLRQISKRLKGQ 300
            MP+S+R++KVSLTKT +KG ELKQ ++ E+RKCVD Y  L++FS  N+R+  LK++R  + K SR F GKNKVM++ALG+S  DEY+DNL Q+SK+L+G+
Sbjct:    1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW-KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGE 99
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13911.6106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X6_ECTSI1.980e-5693.00RL10P_insert domain-containing protein n=2 Tax=Ect... [more]
UPI000A2A4B7E8.790e-3361.00mRNA turnover protein 4 homolog n=1 Tax=Exaiptasia... [more]
A0A6P8HBI4_ACTTE2.730e-3160.00Ribosome assembly factor mrt4 n=1 Tax=Actinia tene... [more]
UPI0012D4060C6.960e-3156.00mRNA turnover protein 4 homolog n=1 Tax=Contarinia... [more]
A0A835Z2W2_9STRA1.010e-3056.00Ribosome assembly factor mrt4 n=1 Tax=Tribonema mi... [more]
UPI001EE2E93E1.790e-3057.00mRNA turnover protein 4 homolog n=1 Tax=Equus quag... [more]
A0A7J8A980_PIPKU2.400e-3057.00MRT4-like protein, ribosome maturation factor n=1 ... [more]
A7T1P1_NEMVE3.080e-3060.00Ribosome assembly factor mrt4 n=1 Tax=Nematostella... [more]
A0A7R8V4G0_HERIL3.260e-3053.00Ribosome assembly factor mrt4 n=2 Tax=Hermetia ill... [more]
UPI000154CE353.320e-3057.00Uncharacterized protein n=1 Tax=Mus musculus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13911contigM-pyrifera_M_contig13911:2994..3293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue5.4e-44
Seed eggNOG ortholog2880.D7G6X6
Preferred nameMRTO4
KEGG koko:K14815
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsCOG0244@1,KOG0816@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815829.7989607-CDS-M-pyrifera_M_contig13911:2993..32931622815829.7989607-CDS-M-pyrifera_M_contig13911:2993..3293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13911 2994..3293 -
1692277593.8634124-CDS-M-pyrifera_M_contig13911:2993..32931692277593.8634124-CDS-M-pyrifera_M_contig13911:2993..3293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13911 2994..3293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13911.6106.1prot_M-pyrifera_M_contig13911.6106.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13911 2994..3293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13911.6106.1

>prot_M-pyrifera_M_contig13911.6106.1 ID=prot_M-pyrifera_M_contig13911.6106.1|Name=mRNA_M-pyrifera_M_contig13911.6106.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MPRSQRNQKVSLTKTNRKGRELKQGIVSEVRKCVDEYPTLYVFSFVNLRS
KLLKEVRMDFRKDSRFFMGKNKVMILALGKSEQDEYQDNLRQISKRLKGQ
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mRNA from alignment at M-pyrifera_M_contig13911:2994..3293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13911.6106.1 ID=mRNA_M-pyrifera_M_contig13911.6106.1|Name=mRNA_M-pyrifera_M_contig13911.6106.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig13911:2994..3293- (Macrocystis pyrifera P11B4 male)
ATGCCGCGATCACAGAGAAACCAAAAGGTCTCCTTGACCAAGACCAACAG
GAAAGGGCGGGAGCTAAAGCAGGGTATCGTTAGCGAGGTGCGGAAATGCG
TGGATGAGTACCCGACCTTGTACGTTTTCTCGTTCGTGAATTTGAGGAGC
AAGCTGTTAAAGGAGGTCAGGATGGACTTCAGAAAGGACAGCCGGTTCTT
CATGGGGAAAAATAAGGTCATGATACTGGCCCTGGGGAAGTCGGAGCAGG
ACGAGTACCAGGACAACCTGCGACAAATAAGCAAGCGGTTGAAAGGCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13911:2994..3293-

>mRNA_M-pyrifera_M_contig13911.6106.1 ID=mRNA_M-pyrifera_M_contig13911.6106.1|Name=mRNA_M-pyrifera_M_contig13911.6106.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig13911:2994..3293- (Macrocystis pyrifera P11B4 male)
ATGCCGCGATCACAGAGAAACCAAAAGGTCTCCTTGACCAAGACCAACAG
GAAAGGGCGGGAGCTAAAGCAGGGTATCGTTAGCGAGGTGCGGAAATGCG
TGGATGAGTACCCGACCTTGTACGTTTTCTCGTTCGTGAATTTGAGGAGC
AAGCTGTTAAAGGAGGTCAGGATGGACTTCAGAAAGGACAGCCGGTTCTT
CATGGGGAAAAATAAGGTCATGATACTGGCCCTGGGGAAGTCGGAGCAGG
ACGAGTACCAGGACAACCTGCGACAAATAAGCAAGCGGTTGAAAGGCCAG
ATGCCGCGATCACAGAGAAACCAAAAGGTCTCCTTGACCAAGACCAACAG
GAAAGGGCGGGAGCTAAAGCAGGGTATCGTTAGCGAGGTGCGGAAATGCG
TGGATGAGTACCCGACCTTGTACGTTTTCTCGTTCGTGAATTTGAGGAGC
AAGCTGTTAAAGGAGGTCAGGATGGACTTCAGAAAGGACAGCCGGTTCTT
CATGGGGAAAAATAAGGTCATGATACTGGCCCTGGGGAAGTCGGAGCAGG
ACGAGTACCAGGACAACCTGCGACAAATAAGCAAGCGGTTGAAAGGCCAG
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