mRNA_M-pyrifera_M_contig13904.6104.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13904.6104.1
Unique NamemRNA_M-pyrifera_M_contig13904.6104.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13904.6104.1 vs. uniprot
Match: D8LKG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG0_ECTSI)

HSP 1 Score: 494 bits (1271), Expect = 9.230e-172
Identity = 263/348 (75.57%), Postives = 283/348 (81.32%), Query Frame = 1
Query:    1 KVLSDFQVPQTVSEAVGRAGSAHVWPLTTEGRPSRLERWDVLKARAADPHREHFATGEAWRQEHPEFEPKLCFYAFDTAVEH--RYWTEEAEAPFRCRLQRSGLKFSRDIAKWEKRLPKKKT---AGSSEQGDNGSCAD---HQNGR------KGAXXXXXXXXXXXXXXXAGFFAFPLVVHNSHAHHVDWTSGPDRYQITQGSEPEWGWSRLFTFFAYAASKYHVLETTKAPLAQKARPEKRERSNCFIFVVKGQFLTPERGWKCVLAFFAFDADVPGSNRYYVEEQDDPHLRTRIGLESSCRWEARHQFAAFDVPVPGSCALDVHYTVSSTDSLSPYPAQCRISLK 1002
            +VL  FQVPQ VSEAVGRAGSAH+WP T +GRPSRLERWDVLKA  +DP+REHF+TGEAWR EHPEFEPKLCFYAFDTAVEH  RYW EEAEAPFRCRLQR GLKFSRDIA WE R P KK     G+S  G  G   D   H  G       +  XXXXXXXXXXXXXX AGFFAFPLVVHNSHAHHVDWTSGPDRYQITQ SEPEWGW+RLFTFFAYAASKYHVLETT+APLAQK              +VKG FLTPE GWKCVLAFFAF+  VPGSNRYY+EE+D+PHLRTRIG+E+SCRW+ARH FAAFDVPVPGSCALDVHYT+ STDSL+PYP QCRISLK
Sbjct:   79 EVLVGFQVPQEVSEAVGRAGSAHIWPRTVDGRPSRLERWDVLKA--SDPYREHFSTGEAWRLEHPEFEPKLCFYAFDTAVEHVERYWVEEAEAPFRCRLQRDGLKFSRDIATWEARAPAKKNDNDKGNSGVGSPGGDLDGDEHWGGEGVGGDGRXXXXXXXXXXXXXXXXGAGFFAFPLVVHNSHAHHVDWTSGPDRYQITQDSEPEWGWTRLFTFFAYAASKYHVLETTQAPLAQK--------------IVKGNFLTPEPGWKCVLAFFAFNDMVPGSNRYYIEEKDEPHLRTRIGMEASCRWDARHSFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLK 410          
BLAST of mRNA_M-pyrifera_M_contig13904.6104.1 vs. uniprot
Match: A0A836CAN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN8_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.100e-42
Identity = 71/159 (44.65%), Postives = 96/159 (60.38%), Query Frame = 1
Query:  523 VDWTSGPDRYQITQGSEPEWGWSRLFTFFAYAASKYHVLETTKAPLAQKARPEKRERSNCFIFVVKGQFLTPERGWKCVLAFFAFDADVPGSNRYYVEEQDDPHLRTRIGLESSCRWEARHQFAAFDVPVPGSCALDVHYTVSSTDSLSPYPAQCRISL 999
            +DWTSGPDRY ++ G EP WGW+R+FT  A+A SKYH+LE    P  +               +VKG  + PER W+C  AFFAFD  VPGS + +V+ + +PH+R+R+ L  S RWE       F +P+P +   +VHYTV S +SL  +P Q RI L
Sbjct:    1 MDWTSGPDRYCVSVGDEPSWGWTRVFTMHAFAVSKYHLLERLDPPSYR---------------IVKGTHIKPERDWRCCFAFFAFDGPVPGSTQLFVQMRGEPHIRSRVALTHSERWEDHLSMYVFCMPMPNTAQFNVHYTVRSAESLDAFPEQDRIHL 144          
BLAST of mRNA_M-pyrifera_M_contig13904.6104.1 vs. uniprot
Match: A0A7S3Y5K5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5K5_HETAK)

HSP 1 Score: 143 bits (361), Expect = 9.550e-37
Identity = 74/176 (42.05%), Postives = 98/176 (55.68%), Query Frame = 1
Query:  478 FFAFPLVVHNSHAHHVDWTSGPDRYQITQGSEPEWGWSRLFTFFAYAASKYHVLETTKAPLAQKARPEKRERSNCFIFVVKGQFLTPERGWKCVLAFFAFDADVPGSNRYYVEEQDDPHLRTRIGLESSCRWEARHQFAAFDVPVP--GSCALDVHYTVSSTDSLSPYPAQCRISL 999
            F+A+P     ++  HVDW+SGPDRY I+Q   P  GW R F F+AY ASKYHVLE  K      ARP +R        +VKG ++  E GW+C   F+  D   PG+N Y+V++Q++P  RTRIGLE +  W                G+  + VHY + STDS   YP Q RI+L
Sbjct:  107 FYAYPQTYQGTNEFHVDWSSGPDRYMISQDGLPRMGWKRQFQFYAYGASKYHVLE--KVLDMATARPGERPGYK----IVKGHYIPAEPGWRCRFGFYGLDDPAPGANLYHVQDQEEPFYRTRIGLERATHWXXXXXXXXXXXXXXXHGTSKVSVHYMIRSTDSEDVYPDQHRITL 276          
BLAST of mRNA_M-pyrifera_M_contig13904.6104.1 vs. uniprot
Match: A0A7S4E3X4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E3X4_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.440e-23
Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  478 FFAFPLVVHNSHAHHVDWTSGPDRYQITQGSEPEWGWSRLFTFFAYAASKYHVLETTKAPLAQKARPEKRERSNCFIFVVKGQFLTPERGWKCVLAFFAFDADVPGSNRYYVEEQDDPHLRTRIGLESSCR---WEARH-QFAAFDVPVPGSCALDVHYTV 948
            FFA P         H+DWTS PDRY ++    P   W R F FFAY A+K+H+LE        +  P   E +  +  V  G        W+C+ AFFAFD+ VP +N+Y +++  D + R R+G+ +S R   W+    +F A+DVPVPG+    V Y V
Sbjct:  266 FFALPEPQPGLSEFHIDWTSAPDRYMVSTEYRPAAAWLRCFRFFAYKATKFHLLE--------RVWPHGSELTTSYRLVA-GHECPVNAHWRCLFAFFAFDSCVPNANQYTIQQSVDGYDRLRVGMTASIRPGEWDPNDLKFYAYDVPVPGTAKFSVQYRV 417          
BLAST of mRNA_M-pyrifera_M_contig13904.6104.1 vs. uniprot
Match: A0A7S3K3X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3X8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.380e-22
Identity = 62/166 (37.35%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  478 FFAFPLVVHNSHAHHVDWTSGPDRYQITQGSE--PEWGWSRLFTFFAYAASKYHVLET---TKAPLAQKARPEKRERSNCFIFVVKGQFLTPERGWKCVLAFFAFDADVPGSNRYYVEE--QDDPHLRTRIGLE-SSCR-WEARHQFAAF--DVPVPGSCALDVHY 942
            F+AFP    N+    VDWTSGPDRY+I +  E  PE GW R F FFAY A+KYH+L     + AP++   R            ++ G     +R W+C  AFFA D   PG+N+Y++++  Q + + R RIG+  + C  W+   QF  +  D+P P +   +V Y
Sbjct:  136 FWAFPERTANAQELAVDWTSGPDRYRIIRHPESRPEAGWLRCFRFFAYPATKYHILYRDWPSGAPVSTSYR------------IISGHLCPVQRPWRCAFAFFALDEQAPGTNKYFIQKTPQSEYYPRIRIGMTPAQCGGWDPHDQFIFYAPDMPWPCTAKFNVQY 289          
BLAST of mRNA_M-pyrifera_M_contig13904.6104.1 vs. uniprot
Match: A0A7S2AWR6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AWR6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.590e-8
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:  739 ERGWKCVLAFFAFDADVPGSNRYYVEEQDDPHLRTRIGLE 858
            E GW+C+ AF+AFD  +PG+ RYYV+EQ +PH R R+G E
Sbjct:    3 EEGWRCLFAFYAFDEMIPGTTRYYVQEQFEPHQRIRVGQE 42          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13904.6104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LKG0_ECTSI9.230e-17275.57WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A836CAN8_9STRA1.100e-4244.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y5K5_HETAK9.550e-3742.05Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4E3X4_9STRA1.440e-2337.27Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3K3X8_9STRA3.380e-2237.35Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A7S2AWR6_9STRA2.590e-857.50Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13904contigM-pyrifera_M_contig13904:268..6175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-16_002840.1
Exons6
Model size1002
Cds size1002
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13904.6104.1prot_M-pyrifera_M_contig13904.6104.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13904 268..6175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815829.5547884-CDS-M-pyrifera_M_contig13904:267..4661622815829.5547884-CDS-M-pyrifera_M_contig13904:267..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13904 268..466 -
1692277593.6493783-CDS-M-pyrifera_M_contig13904:267..4661692277593.6493783-CDS-M-pyrifera_M_contig13904:267..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13904 268..466 -
1622815829.5663486-CDS-M-pyrifera_M_contig13904:861..9531622815829.5663486-CDS-M-pyrifera_M_contig13904:861..953Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13904 862..953 -
1692277593.6599984-CDS-M-pyrifera_M_contig13904:861..9531692277593.6599984-CDS-M-pyrifera_M_contig13904:861..953Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13904 862..953 -
1622815829.5767994-CDS-M-pyrifera_M_contig13904:1769..19551622815829.5767994-CDS-M-pyrifera_M_contig13904:1769..1955Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13904 1770..1955 -
1692277593.6764774-CDS-M-pyrifera_M_contig13904:1769..19551692277593.6764774-CDS-M-pyrifera_M_contig13904:1769..1955Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13904 1770..1955 -
1622815829.5892336-CDS-M-pyrifera_M_contig13904:2783..30621622815829.5892336-CDS-M-pyrifera_M_contig13904:2783..3062Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13904 2784..3062 -
1692277593.688896-CDS-M-pyrifera_M_contig13904:2783..30621692277593.688896-CDS-M-pyrifera_M_contig13904:2783..3062Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13904 2784..3062 -
1622815829.5992768-CDS-M-pyrifera_M_contig13904:3765..38761622815829.5992768-CDS-M-pyrifera_M_contig13904:3765..3876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13904 3766..3876 -
1692277593.7055273-CDS-M-pyrifera_M_contig13904:3765..38761692277593.7055273-CDS-M-pyrifera_M_contig13904:3765..3876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13904 3766..3876 -
1622815829.6146216-CDS-M-pyrifera_M_contig13904:6040..61751622815829.6146216-CDS-M-pyrifera_M_contig13904:6040..6175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13904 6041..6175 -
1692277593.7155268-CDS-M-pyrifera_M_contig13904:6040..61751692277593.7155268-CDS-M-pyrifera_M_contig13904:6040..6175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13904 6041..6175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13904.6104.1

>prot_M-pyrifera_M_contig13904.6104.1 ID=prot_M-pyrifera_M_contig13904.6104.1|Name=mRNA_M-pyrifera_M_contig13904.6104.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=334bp
KVLSDFQVPQTVSEAVGRAGSAHVWPLTTEGRPSRLERWDVLKARAADPH
REHFATGEAWRQEHPEFEPKLCFYAFDTAVEHRYWTEEAEAPFRCRLQRS
GLKFSRDIAKWEKRLPKKKTAGSSEQGDNGSCADHQNGRKGAGGDGGGGG
GGSGGDGAGFFAFPLVVHNSHAHHVDWTSGPDRYQITQGSEPEWGWSRLF
TFFAYAASKYHVLETTKAPLAQKARPEKRERSNCFIFVVKGQFLTPERGW
KCVLAFFAFDADVPGSNRYYVEEQDDPHLRTRIGLESSCRWEARHQFAAF
DVPVPGSCALDVHYTVSSTDSLSPYPAQCRISLK
back to top

mRNA from alignment at M-pyrifera_M_contig13904:268..6175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13904.6104.1 ID=mRNA_M-pyrifera_M_contig13904.6104.1|Name=mRNA_M-pyrifera_M_contig13904.6104.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5908bp|location=Sequence derived from alignment at M-pyrifera_M_contig13904:268..6175- (Macrocystis pyrifera P11B4 male)
AAGGTTTTGAGCGATTTTCAAGTACCGCAGACAGTGTCCGAGGCTGTCGG GAGGGCCGGGTCGGCGCACGTCTGGCCGCTGACAACCGAGGGACGGCCGT CGCGCCTCGAGCGGTGGGACGTACTCAAGGCAAGAGTCTACTGCTGCTGT CAAAAACACTATTTTTGGTTTGGTCGACGTTGTCAATCGCCCGTCTAGCC TCTGTTTTTTTTTGTCATCACGGTTACACTCTCGAGTTCTCGTACGTACA CGATGGGACGTGGTAACAGTAAGAGCCTCTTTTTCAAAAACAGCAGTTGC GTTTCATTTTGCTTAATCACGTTTACCTTTCCAGCTTAACGCGATAGGAC GTGCAAAATGCAAGACTTGTACTGTCACAGTTTCAGACGGAGTAGTAAAA AAAACAGTACCTGTCTACGTATCTGGTGTTACGAATATGGGAAGAAACCG GAGCACTGCTGCCAACAATGTGAAAGTGAAACACTGACGAGGAGTAGAGT ACGCCAGGGTTTTCCAAGGGAAGGAGGTGCGAGTACAAGCCTTCAAGAAG GGGAAAGTGGGACATTTATTGGTTCAGAGCGGTAGAAGAGAGAGACCACT CGTACTGCTGCGGTAGTAGAAAATTTTCGATGCAAGTCGGAATGCAACAT GTATGTACATACGATGCAGTATCGAAGAGAAAAGTTCATATTAATAGATA TAAAAATATTTTTTGCTACGTATTGCTCTGGAAGCGTAAAAAATGGGGGG CAAAACCTGAACCTGAAAGGGGATACGCATGTCTCCCCGTGTATACGAGT GACACCTGAGCCTGAGCTTTCTGGAGCTCCGTCGTCTATTCGGGAGCTCA TACCCCGTTTAAGAACGCGCTCCCGTTTTTTGGGACAACTTTCCTGCCAT TTAGAGTCAGATTCAGGTGTATCTGCCTGTTGACGATGCGTCTCGTGAAG AGACTCGCTCGCAGATGGATGGTGACACCCAGTGATCGAGAGATACACTT GCGTTGTTCAATAGAACAACAGAGAGAGATGGTTCGAAGGGTGGCGCTTA TGTGGTCGTGCTCAAGAGAGCGGTGATGTTGGAGAGTATCGAAGATTTAC CGACATCGGAATAATATACGAACAGATGTGACAGTCTTGTTGTATATTCC AGCAGTACCAGTCCAGAAACAGAAAGGGTGAACCTCTCTCCCAACAACGA CCGAATTTGAAACAAGCAGGAAGATAAACCCGATATAAGCGATGAGTTTA CCTCTCTCCCAACAACCGAATCTGAGAAAAAATGGGAAGCAAATGAGCCC GACATGCAAGCAGTGTCATGGGCTAGATATTTAGAGCAGAAACGCAATAT AATGTGGAACCCACGTCGGGATGCCAAGGTAATATACCGAGTAGTTTTTT TCTCGGTCGGGAAGCCCCGCTGTTCCTACATATAGGCAACATTAGGTTTA AGTATTCACATACGGACGGTCCTTATATTGAGGTACAGAGTGGATGATAT TTGGACTCAAAGGCGCAATCCCTAATTGCAACCCCTACTATAAATATTAC GGTGGCCCGGCTTCATTGTCAGGGCAGCCTCTAATTGCAGCCCCTCGCTG TAGAACTAAGGACACTCACCTGCGTGTTTTTGATATAATCTGCTTGGATT GTTTAGTGTGGGATCATTTTTGTTTCAGTAAAGAGGTCTACTGTAGGGTC CGTACCAAACCCCCTTAAGATGACAAGAGTCTCACCGCATGCATCATTTC CCCCCCCGCCCTTGGCGCAAGTACTCCCATTGCTGTCTCTTGGAATTGGC CACACCGGAAACTAAATTACCTCATTGAAGCTGTCATCCATATGCAAGAA AGTCCGCCTCATACGCTGTTCTTAGTGTGATGCAGCTCACCCTTCATGCG ACTCGCCGGAAACCTGACGACTCTTCGCGCTTGGTGCAAGCAATGTCTGC CTGGTCGGTGAAAACTCGACGTGCTCCGTGCCAGCATTGTAGGGATACGA GGGTCTACGGTCGTACGACTACCGGCATGCATGATATCGAGCACATCACC CCTAACGAAAGTGCTATGGAGAAATTTACTACACTGGACACTAAGAAATA TATGGAAAAAAACGGAATGAACGCCCAAACGTGTCGAGGTGTCTCTCTCA GGAGCAGGAACAGTGCTCCGTCTCGAAAGCGATTCATTGTCGATGGTCAA ATAAATGGCGACGGCAAGCAACAAAATGAGTACGCCCCACCCCCCCCCCT TTATCTCCGTCCGTTGCGCTCTGACACACCGAAACACCGACAACAACAGG CGGCGGACCCTCACCGCGAGCACTTTGCCACGGGGGAGGCGTGGCGGCAG GAGCACCCTGAGTTCGAGCCGAAGCTGTGCTTTTACGCCTTCGACACCGC CGTCGAGCACGTCGAGGCAAGTAGGATTCACATTCACTCAGAGAAAACGT GTGACTCTATTTTAGCCGAGGCAAACATTTTGACGCCTCTTTGCGAAGAA AAACATTTTGTTGCGACTCTGTGCTTGAGGGGGCTGAAACGAAAACCTCG AGCAAAATTTAAGCATGGCCTTGTTTGGTTCCTGACTTCAACAACAACAA CAACAACAACAACAACAACAACAACACACGAATGACTGTCTGCCACATGT TCATGGATTCGTTGCCATCCCGCAAAACCAAGAATATCGTCACACATCCC CTCAATACCGTGAACCACGATGTACGACACGAACAAAAGGGATTGCGCAG TTCCTCAAGTGAGCCCCCCCCCTGCTGAGGGGCCCCTAAAGGAAGGACCC CCAGTTGAGGGGCTCCCAGTTGAGGGCCCCCCAGCTGAGGGGCCCTCAGT TGACTGGCCCCCATTTTGAGGGTGCCCAAGTTGAGGGGCCCCCAGTTGAG CCCCCCCCCCGTCAATCAGATGGTTCAGGACTAATCCTCACCCCCATCCC CACCCCCCCCTTATCGCGGGGTTGGCTCAACACCCCCCCCACCCCCCTCC CACGCCTCTCCAAAACATAAAAACAGAACCCAAACCAAAAACCAAAAAAG AAAAAAGAAATTTCGTCCCATTCTCACTCACTCCATTTTTTTGTGATTGT ATTTTGTTTTCAGCGCTACTGGACGGAAGAGGCGGAAGCACCCTTCCGAT GCCGCCTCCAGAGAAGCGGACTCAAGTTTTCGCGCGACATCGCCAAGTGG GAAAAACGCCTCCCAAAGAAAAAAACAGCGGGAAGTAGCGAGCAAGGGGA CAATGGTAGTTGTGCCGACCACCAGAACGGCAGGAAGGGGGCGGGGGGGG ATGGGGGAGGAGGTGGGGGCGGGAGTGGTGGGGATGGTGCTGGCTTCTTC GCCTTCCCGCTAGTGGTGCACAATTCCCACGCTCATCACGTGGTGAGAAA GTAGAACAAAACATGTTGGTGTGAGTTTTTCAACCAAATCGTAATTATGT ACCCGTTAGTATTTTTGCGTTCTTGTATTCTTCAAGCTATAATATTTCCG TTGCAACTGAGCGTCGTCCTTGAGCTCTCGGAACCGTCGGAACATGCTCG GAACGTTCTCGAAACATTGATTACAGAGGAGCCGAAGGGTAAAACGTGGG CTCCTTTGTTTAGTTGACGCCAAACCAGTGGGAAGTCTGGGTACCGCTAT TGCGTATATACGTAAACTATGATACGAGAACCCCAAGCCGCGTGCGCTGC CAAAAAGAGAGATGCACTACGTTGTACAGGGATTAGGCCCTTTCGATGTA TCAAAGAGCCAGAACATTAGCAGTTGCCCGCGACAAGACCCCCCAAAGAC AGCAAATATGGAAAGTGAGAGTCAAAGAACCCACGATCAAACTCTGCACG CCACCTCACTCCCTGCCCGCCTCGTTTTGGACTTCCTTCGGCCCACTCCT CCCTCTTCCTTCTTCCATATGCCTCCACGCACACAGCATACACACCCTCA CCCCTCCCCTTCCCCCCTCCCCCTTTTCCTACCCCCCCCCCGCGGACAAC TCCACAACATGATATTAACTTCCTCTCTCTGCCATTCCCACTCCCGGTTA TACACGGGCCTCTCACGATAATCCCTCCGCGCTGCACCCCTCTCATATCC ATATCCCTATCTATACTCATATCCATATCCATATCCATATCCGTACCCGT ATCCATATCCATACGCTTATCCATCCCACGATCCCAACGGCAAAACAAAA CAAAAAACATGAAAAAAAAGGACTGGACTTCAGGGCCCGACCGCTACCAG ATCACCCAAGGGTCGGAGCCAGAGTGGGGATGGTCCAGGCTCTTCACGTT CTTCGCCTACGCTGCCTCCAAGTACCATGTGCTCGAGACCACGAAAGCTC CGCTGGCACAAAAGGCAAGGCCAGAGAAAAGAGAGAGAAGCAATTGCTTC ATTTTTGTTTTCCCTTGCTCCGGTTTTTGTGAGGAGGGGTGGGGGTGGGG TGGGATGGGGTGGAGTGGGGTGGGATGGGGTGGAGTGGGGTGGGGTGGGG TGGAGTGAGATGGGGTGGGGTGAGTTGGGGATGGAGGTAGATGAGGGGGG CAAGTGGCGATAGGCATGCAAGAAGGGGGCTTCCTGCTGAGTGTGTCGGA GTAGGCTGCAGCAGTGGAGGGGTGTAAGGGACGGGAAGGGAGGGCAAGGG GAAGGAAAGAGGGGCGGGGAAAGGGGCGGGGTTTTATTCAAGATTTTGTG TTTTGTGCACCGATTGTCCCACCGCCCAACTTCGCTTCGTGTCGCGAAGA AAATCGTGGCATTTTTCATGCTTTGCGGCTGTCAATCAACCTGTCCCGCC TGTCGTGCGACAATTCGTGCTGGCAACAACACAACGCGCAAAGAATCTCA TCGAAGGCCGCCATGATGTTTCTACTCGCACTGCTGCTTAAGTCATAGCA ACGCTTCTCTTGAGTGTACTCACGTGCATACAGCGCATACAACCCCATAC AACGCATACAACACATACAACGTATGCAAACCAACATAATATACGATGCA TACCACGCATACAGCGCATAAAACGCATACAACCCGTACAGCGCATACAG CAGTACACACATACATCATGTACAGCACAGACATCACATACAACAACGCA TTCATCACATACAGCGCATACAACGCATATAACGCATACAGCGCACACAA CACATACGTAGAGCGCGTACCGTACAACGTATACGACGCATACAACGAAT GTCAATGCATGCTCTCTGTCAGGTGGTAAAGGGGCAGTTTCTCACCCCGG AAAGGGGCTGGAAGTGCGTGCTGGCGTTCTTCGCGTTCGACGCCGACGTT CCTGGCAGCAACAGGTGCGTTTGTAGCTGATGCTCTCGCCTTGCGCGCTA GCACTTTTGTGTGTGCGTGCCCAACATTAAAACAACAACACGCCAACTAA AACGATAACAACTACTCCCTCCCTCCCCGAAAACAAACAACAGCAACAAC AACAACAACAACAAACAATTCCAACTAACACCCTCCCCAAAAACAAAACA TACTTAGGGTGGGATGCAGCTCACCCTTCATGCGACTCGCCCAACACCTC GCGACGCTTCGCGCTTTGTGCAAGCGATGTCTGCCTTGTCGGTGAAAACC CGACGTGCTCCGTCCCGGCATTGTAAGGATGCGAGAGTCCATGGTTATAC CACTACGGCCACGCATGACTTGAGTATACCCCCCTCCAAAACAATAAACT CAAAAACAGGTACTACGTGGAGGAGCAGGACGATCCCCACCTTCGGACTA GGATAGGTCTCGAGTCCTCCTGCCGGTGGGAAGCCAGGCACCAGTTTGCG GCATTTGATGTTCCTGTGCCGGGCTCCTGCGCTCTAGATGTGCACTACAC CGTCAGCAGTACCGACAGCCTCAGTCCCTATCCTGCGCAATGCCGCATCT CATTGAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13904:268..6175-

>mRNA_M-pyrifera_M_contig13904.6104.1 ID=mRNA_M-pyrifera_M_contig13904.6104.1|Name=mRNA_M-pyrifera_M_contig13904.6104.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2004bp|location=Sequence derived from alignment at M-pyrifera_M_contig13904:268..6175- (Macrocystis pyrifera P11B4 male)
AAGGTTTTGAGCGATTTTCAAGTACCGCAGACAGTGTCCGAGGCTGTCGG
GAGGGCCGGGTCGGCGCACGTCTGGCCGCTGACAACCGAGGGACGGCCGT
CGCGCCTCGAGCGGTGGGACGTACTCAAGGCAAGAAAGGTTTTGAGCGAT
TTTCAAGTACCGCAGACAGTGTCCGAGGCTGTCGGGAGGGCCGGGTCGGC
GCACGTCTGGCCGCTGACAACCGAGGGACGGCCGTCGCGCCTCGAGCGGT
GGGACGTACTCAAGGCAAGAGCGGCGGACCCTCACCGCGAGCACTTTGCC
ACGGGGGAGGCGTGGCGGCAGGAGCACCCTGAGTTCGAGCCGAAGCTGTG
CTTTTACGCCTTCGACACCGCCGTCGAGCACGCGGCGGACCCTCACCGCG
AGCACTTTGCCACGGGGGAGGCGTGGCGGCAGGAGCACCCTGAGTTCGAG
CCGAAGCTGTGCTTTTACGCCTTCGACACCGCCGTCGAGCACCGCTACTG
GACGGAAGAGGCGGAAGCACCCTTCCGATGCCGCCTCCAGAGAAGCGGAC
TCAAGTTTTCGCGCGACATCGCCAAGTGGGAAAAACGCCTCCCAAAGAAA
AAAACAGCGGGAAGTAGCGAGCAAGGGGACAATGGTAGTTGTGCCGACCA
CCAGAACGGCAGGAAGGGGGCGGGGGGGGATGGGGGAGGAGGTGGGGGCG
GGAGTGGTGGGGATGGTGCTGGCTTCTTCGCCTTCCCGCTAGTGGTGCAC
AATTCCCACGCTCATCACGTGCGCTACTGGACGGAAGAGGCGGAAGCACC
CTTCCGATGCCGCCTCCAGAGAAGCGGACTCAAGTTTTCGCGCGACATCG
CCAAGTGGGAAAAACGCCTCCCAAAGAAAAAAACAGCGGGAAGTAGCGAG
CAAGGGGACAATGGTAGTTGTGCCGACCACCAGAACGGCAGGAAGGGGGC
GGGGGGGGATGGGGGAGGAGGTGGGGGCGGGAGTGGTGGGGATGGTGCTG
GCTTCTTCGCCTTCCCGCTAGTGGTGCACAATTCCCACGCTCATCACGTG
GACTGGACTTCAGGGCCCGACCGCTACCAGATCACCCAAGGGTCGGAGCC
AGAGTGGGGATGGTCCAGGCTCTTCACGTTCTTCGCCTACGCTGCCTCCA
AGTACCATGTGCTCGAGACCACGAAAGCTCCGCTGGCACAAAAGGCAAGG
CCAGAGAAAAGAGAGAGAAGCAATTGCTTCATTTTTGACTGGACTTCAGG
GCCCGACCGCTACCAGATCACCCAAGGGTCGGAGCCAGAGTGGGGATGGT
CCAGGCTCTTCACGTTCTTCGCCTACGCTGCCTCCAAGTACCATGTGCTC
GAGACCACGAAAGCTCCGCTGGCACAAAAGGCAAGGCCAGAGAAAAGAGA
GAGAAGCAATTGCTTCATTTTTGTGGTAAAGGGGCAGTTTCTCACCCCGG
AAAGGGGCTGGAAGTGCGTGCTGGCGTTCTTCGCGTTCGACGCCGACGTT
CCTGGCAGCAACAGGTGGTAAAGGGGCAGTTTCTCACCCCGGAAAGGGGC
TGGAAGTGCGTGCTGGCGTTCTTCGCGTTCGACGCCGACGTTCCTGGCAG
CAACAGGTACTACGTGGAGGAGCAGGACGATCCCCACCTTCGGACTAGGA
TAGGTCTCGAGTCCTCCTGCCGGTGGGAAGCCAGGCACCAGTTTGCGGCA
TTTGATGTTCCTGTGCCGGGCTCCTGCGCTCTAGATGTGCACTACACCGT
CAGCAGTACCGACAGCCTCAGTCCCTATCCTGCGCAATGCCGCATCTCAT
TGAAGGTACTACGTGGAGGAGCAGGACGATCCCCACCTTCGGACTAGGAT
AGGTCTCGAGTCCTCCTGCCGGTGGGAAGCCAGGCACCAGTTTGCGGCAT
TTGATGTTCCTGTGCCGGGCTCCTGCGCTCTAGATGTGCACTACACCGTC
AGCAGTACCGACAGCCTCAGTCCCTATCCTGCGCAATGCCGCATCTCATT
GAAG
back to top