mRNA_M-pyrifera_M_contig138.6076.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig138.6076.1
Unique NamemRNA_M-pyrifera_M_contig138.6076.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig138.6076.1 vs. uniprot
Match: D8LIE4_ECTSI (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE4_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.920e-36
Identity = 135/290 (46.55%), Postives = 165/290 (56.90%), Query Frame = 1 
Query:    1 VMNISAALGLSSDFR-----SDATGEAFSVERVASLAAEARLLMGEERLLEGEDS---PLRRVKNPRDLSLLVKRYRLIEGKKTAQSLESMP---AGVPQKDEDWDGGKPIEPFGNLSISNLSVGDRLSKDASLRVTVEAIITADDEASEDNFESXXXXXXXXXXXXXXXXXXXSTGLKKAVRSFD-------RRRQNAGPRRRRQ-------SMSAVTVHLRHQSSKVLFVWRTAGVKDTGGAELHEGGAYRLVATVQSVADVA----AWKVGVMRCRLTPVT-DVRGG 780
            VM++SAALGLSS FR     +D  G AFSVE V SLAAEA  L+  +   E E++   PL   K PR+L+LLVK YRL++G KTA++  ++    A        WD            +S L VGDR+ KD+ LRV VEAI+   +E  +D+ ES   XXXXXXXXXXXXXXXX        RSF        RRR    P R R        +  + TV +RH SS  +F WRT+GVKDT GAELHEG +YRLVATV           A +VG+ RCRLT VT D  GG
Sbjct:  269 VMSMSAALGLSSGFRGDDAGTDGMGGAFSVEHVGSLAAEAMSLVDADGAAEVENACSHPLLEAKTPRELALLVKHYRLLQGAKTAETTLTVTGRGANDGTSSPGWD------------LSQLCVGDRIGKDSFLRVIVEAILLGYEEGQDDD-ESEDFXXXXXXXXXXXXXXXXXXDEDGCERSFSKPHPKTKRRRFPRAPIRTRPWRKKKPFAAGSATVRMRHPSSGTIFSWRTSGVKDTSGAELHEGASYRLVATVTEALAAGGAEEAGEVGLTRCRLTLVTADASGG 545
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BLAST of mRNA_M-pyrifera_M_contig138.6076.1 vs. uniprot
Match: A0A6H5L5W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 9.570e-25
Identity = 102/231 (44.16%), Postives = 128/231 (55.41%), Query Frame = 1 
Query:  151 PLRRVKNPRDLSLLVKRYRLIEGKKTAQSLESMPAGVPQKDEDWDGGKPIEPFGNLSISNLSVGDRLSKDASLRVTVEAIITADDEASEDNFESXXXXXXXXXXXXXXXXXXXSTGLKKAVRSFDRRRQNAGPRR---------------RRQSMSA--VTVHLRHQSSKVLFVWRTAGVKDTGGAELHEGGAYRLVATVQSVADVAAWK----VGVMRCRLTPVTDVRGG 780
            PL   K PR+L+LLVK YRL++G K A++  ++  G    D        I P G   +S L VGDR+ KD+ LRV VEAI+   +E  +D+     XXXXXXXXXXXXXXXX   G     RSF +  Q    RR               +++  +A   TV +RH SS  +F W+T+GVKDT GAELHEG +YRLVATV     V   K    +GV RCRLT VT    G
Sbjct:   19 PLLEAKTPRELALLVKHYRLLQGAKAAETTLTV-TGRGAND-------GISPPG-WDLSQLYVGDRIGKDSFLRVVVEAILLGYEEGQDDDESEDLXXXXXXXXXXXXXXXXYDDG-DGYERSFSKPHQRTKRRRFPRAHIRSRPSPRWSKKKPFAAGSATVRMRHPSSGTIFSWKTSGVKDTSGAELHEGASYRLVATVAEALAVGGTKGPGEIGVTRCRLTLVTAAASG 239
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig138.6076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIE4_ECTSI2.920e-3646.55Helicase C-terminal domain-containing protein n=1 ... [more]
A0A6H5L5W6_9PHAE9.570e-2544.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig138contigM-pyrifera_M_contig138:11453..14662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue1e-33
Seed eggNOG ortholog2880.D8LIE4
Preferred nameirc3
KEGG koko:K17677
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0031974,GO:0031981,GO:0032042,GO:0033676,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360
EggNOG free text desc.DEAD DEAH box helicase
EggNOG OGs2QT4U@2759,COG1061@1
Ec32 ortholog descriptionHelicase
Ec32 orthologEc-18_003980.1
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Exons4
Model size789
Cds size786
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig138.6076.1prot_M-pyrifera_M_contig138.6076.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig138 11453..14659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815826.706847-CDS-M-pyrifera_M_contig138:11452..118691622815826.706847-CDS-M-pyrifera_M_contig138:11452..11869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig138 11453..11869 -
1692277591.711769-CDS-M-pyrifera_M_contig138:11452..118691692277591.711769-CDS-M-pyrifera_M_contig138:11452..11869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig138 11453..11869 -
1622815826.718611-CDS-M-pyrifera_M_contig138:12311..124671622815826.718611-CDS-M-pyrifera_M_contig138:12311..12467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig138 12312..12467 -
1692277591.7276435-CDS-M-pyrifera_M_contig138:12311..124671692277591.7276435-CDS-M-pyrifera_M_contig138:12311..12467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig138 12312..12467 -
1622815826.729279-CDS-M-pyrifera_M_contig138:13059..131971622815826.729279-CDS-M-pyrifera_M_contig138:13059..13197Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig138 13060..13197 -
1692277591.7396395-CDS-M-pyrifera_M_contig138:13059..131971692277591.7396395-CDS-M-pyrifera_M_contig138:13059..13197Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig138 13060..13197 -
1622815826.7402813-CDS-M-pyrifera_M_contig138:14584..146591622815826.7402813-CDS-M-pyrifera_M_contig138:14584..14659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig138 14585..14659 -
1692277591.7514784-CDS-M-pyrifera_M_contig138:14584..146591692277591.7514784-CDS-M-pyrifera_M_contig138:14584..14659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig138 14585..14659 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815826.7519948-UTR-M-pyrifera_M_contig138:14659..146621622815826.7519948-UTR-M-pyrifera_M_contig138:14659..14662Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig138 14660..14662 -
1692277591.7609663-UTR-M-pyrifera_M_contig138:14659..146621692277591.7609663-UTR-M-pyrifera_M_contig138:14659..14662Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig138 14660..14662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig138.6076.1

>prot_M-pyrifera_M_contig138.6076.1 ID=prot_M-pyrifera_M_contig138.6076.1|Name=mRNA_M-pyrifera_M_contig138.6076.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=262bp
MNISAALGLSSDFRSDATGEAFSVERVASLAAEARLLMGEERLLEGEDSP
LRRVKNPRDLSLLVKRYRLIEGKKTAQSLESMPAGVPQKDEDWDGGKPIE
PFGNLSISNLSVGDRLSKDASLRVTVEAIITADDEASEDNFESEDDDDQY
DDDCDDEVEDDSSTGLKKAVRSFDRRRQNAGPRRRRQSMSAVTVHLRHQS
SKVLFVWRTAGVKDTGGAELHEGGAYRLVATVQSVADVAAWKVGVMRCRL
TPVTDVRGGIV*
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mRNA from alignment at M-pyrifera_M_contig138:11453..14662-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig138.6076.1 ID=mRNA_M-pyrifera_M_contig138.6076.1|Name=mRNA_M-pyrifera_M_contig138.6076.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3210bp|location=Sequence derived from alignment at M-pyrifera_M_contig138:11453..14662- (Macrocystis pyrifera P11B4 male)
GTGATGAACATTTCGGCGGCCCTTGGGCTTTCCTCTGATTTTCGAAGCGA
TGCGACGGGAGAGGCCTTCTCCGTGGAGGTGAGGCGTTGGTACGTCGGCA
GCGCGTGCAATGGAGCGTCAGACGCCCTGTTGCTGCTGAGAATCTGGGCC
GGCGAGTCAGGAAGCCGAACCTCTGGGACATACCACTCTGCCCGGAATTA
ATAACCAATCGGTCCTTACCTATCTTTGGCAAGTTGTGCAGCGTGCTCCC
GGTGCGGGGAGCGAGCGAGGTTGAAGATTCTGCCAGGATTTTTTACGGCT
ACGTAGAGTGGATGGAATGAAGTACATTGATATCGCGCCGCCTACGGTAC
AAGACGTGGATACCGAAAAATTTTGATGTATCTACTGAAGGGTGGGGAGC
AGAGCAGTTACGGCTCACCAGTGCTCGTTGGGAAGGGTCAAGCTACCAGT
GCTGTAGTGCGGTGAGTTGTTCGGAGTGTGGTTGTCTTTTTGGTCTGTTG
GCGTCGTCCTTAGCTTTGGCATTGGCAGCTGCAGCGCTGTGGCGATAGCG
CTTACCAAAACGGCGCAGCAGCTCATCTGGTGCAGGTCAACGGCATTACA
AGGTTAGCGGTTGATTCTGGCGAAAACCGAACGGTTGCTCAATTTCGGAA
CATAGAAAAAAGGCGTCATGTGCCGAGCATGGGAAAAGCACGAAGCGACA
TCTCGTGCGTTTTTGAAACCATCCGTGAAGCTCATTCAGGCCACACGACC
CTGCTCATGTTGACCCCGAAGGACAACATCCCTACCCCAACCGATGCAAG
CTTAGATTTGCCTCATTTGGTAGTTTATTGCAGCCTCCAGGTTTGCTGCC
AACGTTACGATGGTAACCAGCGTAACGAATTCAAAGGGTGGAGGTCGGAA
TCAAAGCTGGAATGGACACCGCGTGACGCTCTTCTCCGCCATCAATACCT
GGACGCCAACATTCTAACCGGGACTACCCAGATATCTATTATCTCCCTTC
AACCATCCAAAGGTCGTCGAATAGGATTCAAATTATCTTCGGTTGTCTCT
TGTCCACCGCCCCCCCCTAAATCGAGCGTCTTTTAGCTTGTGGTTGCATG
GCGACTGAAGGATGATCGCTTTGCGGCGGTCGTGAGCATTCTCTCGACTC
TAAACGCTTGACGCCGTCGAATTTTCGTCGTCGTCTGTTCGTGGTGTTGA
CTGGTTGCTTCCCCTGCCCTACGCCAATTCCTGCCATAAATATTTTTGTT
CTGTACTGACTTCGGCACTTCTTAGACCGCTCCTGTGGCGGTCGATCCGC
CTCGAATACTGTTTACTTCCCCTCACGTTTTCTACGCGATTCTTTTTTCC
GCATATGGCAATAGACCGTAACACGAAAAAATTCCACGTGCTTCCTGTCT
TCTTTCCCTATGCTCGAACTCGTTGTCGGTCATTCTCCTGAACCTTGGTG
TGGGTTTGTTTGCAGCGCGTCGCGTCCCTCGCTGCGGAAGCCCGCTTGCT
GATGGGCGAAGAAAGACTGTTAGAGGGGGAAGACTCTCCACTCAGAAGAG
TCAAGAATCCTAGAGACTTGTCTCTGTTGGTTAAGCGCTACCGCCTTATT
GAGGTAAGTCTGTCACGCGTTACGAAATGTCACGATTTTAAGACACCAAT
GAGGGCCACTCACGCATCTCAAATGCTGGCGAATTGCGATTCATCCAAGT
TGTAGTTTTTGGGGTAGTTCTGCAGTCTGGAGTCTGTGCCATGGATAATT
AATACGCGTATTTTTGTCCACAGCCGGGCCGATCCTGGCGGCAGTAGCAA
AATCCTGTCTGGATGCATCGATCGAAGTGGGCAATGGCGCGAGGCTGTGA
CAGTGGGCATTGGGTTGTGCCAAACCCGCGGCCGAAGCAACAAGCCAAAT
AGTGTAATGTCTTCAACCGGAGCCGCAAACGGCTTACTAGTACAACACGC
CCTTCTCGTCCTGTACAACCTGTACAACCGTGGCGGCACCTTCGGGTACC
AAGATAATCGTTGTGTACTACAGCCGAGCTAAATTGACATACGACACCTA
CGGTATACAAACTGGTACGTGGAAGTGTGCTGAGTCCGAGTGTTATTTCC
CGTCCGCCGGTGGACTAGCAAATACAGCGTAAGCCTATATACCCCCATCA
CTGCCGCCCTTTCCATCTCATTCCCCGTCCAAAAAAACATTTCAGGGGAA
GAAAACCGCGCAAAGCCTGGAGTCGATGCCAGCCGGCGTGCCACAAAAGG
ACGAGGACTGGGACGGCGGAAAACCGATCGAGCCATTCGGCAATTTGTCT
ATATCCAACCTTTCTGTCGGGGACCGCTTGTCGAAGGATGCCTCTTTGCG
AGTGAGATGCTTTATGTTTTGTCTGATTTTGCGGCCTCAGGAGTATCAGT
ATTGCCGTTGGTCCTTCGGCCAGGCCGTGTTACGCTTACAGCAGCGCCAT
TGTGGGTCGCTGGGTGCTGTCTCGTTGCCGCTACTTGTCCAGTACAGTTT
AGCTCAGATTTAGGTTTCTGGTTGGCTCGTACTCGAGGCGCTTTCGATAT
GTTCCTTCTGGAGGGTTAAAAGCCAGCGAGTTGAGGGCGTGTATTTGCTT
CTCGGTGAAAATGAGCCATAGGAATAGTGCTCGTTCGTGTCTTGCGTACG
AATCGAATGAATTTCCACTTGTTGCCTGAAATCTGACGGATTGCATCATA
GCAAGCCAAATGTTGTGGTTTATCTTTGCGGTGGCTGAGCATACGGACAA
GTACGGTAACTGTGCTGTTGGATCGAAATGTGTGATCGTCCAGGTAACGG
TGGAAGCGATAATCACGGCCGACGACGAAGCGAGCGAGGACAATTTTGAG
TCCGAAGATGACGACGACCAGTACGACGACGACTGCGATGACGAGGTCGA
AGACGATTCCAGCACCGGCCTGAAGAAAGCGGTACGGAGTTTTGATCGAC
GGCGGCAGAATGCAGGGCCACGCCGCCGTCGGCAGTCGATGTCGGCTGTT
ACCGTTCACTTGCGTCACCAGTCGTCGAAGGTGTTGTTTGTGTGGAGGAC
GGCGGGGGTTAAAGACACGGGCGGCGCGGAGCTGCACGAGGGGGGGGCGT
ATCGCCTGGTAGCAACTGTGCAAAGCGTAGCGGACGTGGCAGCTTGGAAG
GTCGGAGTAATGCGATGCCGCCTCACTCCGGTAACGGATGTTCGTGGTGG
TATAGTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig138:11453..14662-

>mRNA_M-pyrifera_M_contig138.6076.1 ID=mRNA_M-pyrifera_M_contig138.6076.1|Name=mRNA_M-pyrifera_M_contig138.6076.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1572bp|location=Sequence derived from alignment at M-pyrifera_M_contig138:11453..14662- (Macrocystis pyrifera P11B4 male)
ATGAACATTTCGGCGGCCCTTGGGCTTTCCTCTGATTTTCGAAGCGATGC
GACGGGAGAGGCCTTCTCCGTGGAGATGAACATTTCGGCGGCCCTTGGGC
TTTCCTCTGATTTTCGAAGCGATGCGACGGGAGAGGCCTTCTCCGTGGAG
CGCGTCGCGTCCCTCGCTGCGGAAGCCCGCTTGCTGATGGGCGAAGAAAG
ACTGTTAGAGGGGGAAGACTCTCCACTCAGAAGAGTCAAGAATCCTAGAG
ACTTGTCTCTGTTGGTTAAGCGCTACCGCCTTATTGAGCGCGTCGCGTCC
CTCGCTGCGGAAGCCCGCTTGCTGATGGGCGAAGAAAGACTGTTAGAGGG
GGAAGACTCTCCACTCAGAAGAGTCAAGAATCCTAGAGACTTGTCTCTGT
TGGTTAAGCGCTACCGCCTTATTGAGGGGAAGAAAACCGCGCAAAGCCTG
GAGTCGATGCCAGCCGGCGTGCCACAAAAGGACGAGGACTGGGACGGCGG
AAAACCGATCGAGCCATTCGGCAATTTGTCTATATCCAACCTTTCTGTCG
GGGACCGCTTGTCGAAGGATGCCTCTTTGCGAGGGAAGAAAACCGCGCAA
AGCCTGGAGTCGATGCCAGCCGGCGTGCCACAAAAGGACGAGGACTGGGA
CGGCGGAAAACCGATCGAGCCATTCGGCAATTTGTCTATATCCAACCTTT
CTGTCGGGGACCGCTTGTCGAAGGATGCCTCTTTGCGAGTAACGGTGGAA
GCGATAATCACGGCCGACGACGAAGCGAGCGAGGACAATTTTGAGTCCGA
AGATGACGACGACCAGTACGACGACGACTGCGATGACGAGGTCGAAGACG
ATTCCAGCACCGGCCTGAAGAAAGCGGTACGGAGTTTTGATCGACGGCGG
CAGAATGCAGGGCCACGCCGCCGTCGGCAGTCGATGTCGGCTGTTACCGT
TCACTTGCGTCACCAGTCGTCGAAGGTGTTGTTTGTGTGGAGGACGGCGG
GGGTTAAAGACACGGGCGGCGCGGAGCTGCACGAGGGGGGGGCGTATCGC
CTGGTAGCAACTGTGCAAAGCGTAGCGGACGTGGCAGCTTGGAAGGTCGG
AGTAATGCGATGCCGCCTCACTCCGGTAACGGATGTTCGTGGTGGTATAG
TCTAGGTAACGGTGGAAGCGATAATCACGGCCGACGACGAAGCGAGCGAG
GACAATTTTGAGTCCGAAGATGACGACGACCAGTACGACGACGACTGCGA
TGACGAGGTCGAAGACGATTCCAGCACCGGCCTGAAGAAAGCGGTACGGA
GTTTTGATCGACGGCGGCAGAATGCAGGGCCACGCCGCCGTCGGCAGTCG
ATGTCGGCTGTTACCGTTCACTTGCGTCACCAGTCGTCGAAGGTGTTGTT
TGTGTGGAGGACGGCGGGGGTTAAAGACACGGGCGGCGCGGAGCTGCACG
AGGGGGGGGCGTATCGCCTGGTAGCAACTGTGCAAAGCGTAGCGGACGTG
GCAGCTTGGAAGGTCGGAGTAATGCGATGCCGCCTCACTCCGGTAACGGA
TGTTCGTGGTGGTATAGTCTAG
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