mRNA_M-pyrifera_M_contig13773.6068.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13773.6068.1
Unique NamemRNA_M-pyrifera_M_contig13773.6068.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13773.6068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13773contigM-pyrifera_M_contig13773:4008..7299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size567
Cds size567
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13773.6068.1prot_M-pyrifera_M_contig13773.6068.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13773 4008..7299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815826.0541723-CDS-M-pyrifera_M_contig13773:4007..40601622815826.0541723-CDS-M-pyrifera_M_contig13773:4007..4060Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13773 4008..4060 +
1692277591.2704132-CDS-M-pyrifera_M_contig13773:4007..40601692277591.2704132-CDS-M-pyrifera_M_contig13773:4007..4060Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13773 4008..4060 +
1622815826.070115-CDS-M-pyrifera_M_contig13773:4854..50411622815826.070115-CDS-M-pyrifera_M_contig13773:4854..5041Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13773 4855..5041 +
1692277591.2785697-CDS-M-pyrifera_M_contig13773:4854..50411692277591.2785697-CDS-M-pyrifera_M_contig13773:4854..5041Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13773 4855..5041 +
1622815826.0816922-CDS-M-pyrifera_M_contig13773:5514..56761622815826.0816922-CDS-M-pyrifera_M_contig13773:5514..5676Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13773 5515..5676 +
1692277591.2863038-CDS-M-pyrifera_M_contig13773:5514..56761692277591.2863038-CDS-M-pyrifera_M_contig13773:5514..5676Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13773 5515..5676 +
1622815826.0917997-CDS-M-pyrifera_M_contig13773:7134..72991622815826.0917997-CDS-M-pyrifera_M_contig13773:7134..7299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13773 7135..7299 +
1692277591.2939367-CDS-M-pyrifera_M_contig13773:7134..72991692277591.2939367-CDS-M-pyrifera_M_contig13773:7134..7299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13773 7135..7299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13773.6068.1

>prot_M-pyrifera_M_contig13773.6068.1 ID=prot_M-pyrifera_M_contig13773.6068.1|Name=mRNA_M-pyrifera_M_contig13773.6068.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=189bp
IPEEINRAPSADLRDYFSKYNEEGAKEELCARKEAAFRRDDLGMSSTGAE
FSPVASAEEATINDLTLGMYAPSSYALVIKPCDACLGVTTFICKRNRRVN
EALKLLDSAERLEEGMADLTATNAKLLNRALLAEARLEEAAQLLSEAKNS
GKEGRDWLVKELARVVREKADLETGARGREEDVAEAHRQ
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mRNA from alignment at M-pyrifera_M_contig13773:4008..7299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13773.6068.1 ID=mRNA_M-pyrifera_M_contig13773.6068.1|Name=mRNA_M-pyrifera_M_contig13773.6068.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3292bp|location=Sequence derived from alignment at M-pyrifera_M_contig13773:4008..7299+ (Macrocystis pyrifera P11B4 male)
ATTCCGGAGGAAATCAATCGGGCCCCCTCCGCCGACCTACGAGACTATTT
CAGGTAATTCTGTTCTGAAGCATATGAAGTTTAAACTAGGGTTGAAGCAT
GCTAGCGTTTTGAGCACTGGTTGCCGCGCTCTCTTGAGCCAAATATGTAC
TGTATAGATACGTTCACGCTGTTGGAGGAGACCATGCAGCAGTGTCAGTT
GACTGTCTGCGGCTGTCAATTTGTTGAGCTCATGCAACGTCTCCTATGCC
CCGTTGCTCCAGGTGCTTGAAATTCGCACACCCCAGTTGGCGCTAGCGTG
CAGGGCAAATCGGTTGTCGTGGCACCCACCTCTCGTTTGGGCAACGACCT
GTAGCAGTACAGAGCCCCATGCAACAGCAATTAAATATTGTAACAGACGT
ATTTGACTTTGTAGGTAGCATGATAGAGTTGAGCCGTGATTCGGTCGGGT
CAACGAGGCCCAGTTTCGCTTAAGACGTTCGAGGAAAGCACCCCAAGGCC
CTCTCTCGGACACAACCATACCCACCACTCTCTGTTACGAATAACCTGGG
GAAACCATGGACGGCGTGAATGCCTCATCGGCAGCTGATAATTCATGCAG
CACGAGCGGTACCCCCCCCTCCCCCCCGCTCGCAGAGTTGTAGCATTGCT
ACCCTTAGCGTGAGTTCCTCTGCGTGTTGGACATTTCACCCCTGCCCCCG
ACAACAAAACGCTTCTATTCTCCGTCTTGGGTAGCGTACGATCGATACTC
ATGCACGATCTGGCATGAGCAAGGTGAAGATCATCCCTACCCCCTGACCT
CCATTGGGCATATCAACGTCCCATTGACCTGCATACCGCGTGGGCAGCAA
ATACAACGAGGAGGGAGCAAAGGAAGAGCTGTGCGCGAGAAAGGAAGCGG
CTTTTCGTCGAGATGACCTCGGCATGTCTTCGACGGGCGCGGAGTTTTCT
CCCGTCGCAAGCGCCGAAGAAGCGACAATAAACGATTTGACCCTCGGGAT
GTACGCTCCCAGTAGCTACGCCCTCGTCATTAAGGTGACTTGAAATCGAC
AAAAATATCGATGCTGCGTATGTACCCCCCCGGCTGGCTGGCCCGCTGTG
TTTTGTGCCGTGGTTTTGGGTGGTAGTTAAAGCGTGTGGAGACGGGCGGG
CGACATGCGCAAGTGTGCGGTTTGTTGGTAAAATGTGGACCTGAAGCCAC
ACCCCGTAAACATCCGATAGATACGCTACACAAATATATGCGGTGCAACG
TGAGCCAAGTGCGGTGCAATTTTAGCCCATGAGACTAAGTTCATGGCGTA
ATTCCTGGCACGGTTGTGCCCTGGTGTGGTGTGACACGGTTATGGCAACG
GGTGTTGCGGCCAGGATACAAACACAAAGCGGACTGTCGGGTAATTACAA
CAGACCAGAATCAAAACAAAACGCGTGACCATATGATACACGCCTTCTCT
CTTGAACCCCTTGGTCTCCCTCCCCCACAACCATTGACCGACTGCCTTCT
CGCCCAGCCTTGCGATGCCTGCCTCGGCGTGACGACCTTCATCTGCAAAC
GAAACCGCCGCGTGAACGAGGCCTTGAAACTCCTCGACTCCGCGGAGCGC
CTGGAAGAAGGCATGGCGGATCTGACCGCGACGAACGCGAAATTGTTGAA
CAGGGCTCTTTTGGCAGAGGTGACATCTCGCTTCTTCCAGCGCGTCCGGT
CTACTTCAAGGCGGCAGAGGAGTACACGACGATTAAGCTCGTGCTACACG
TACAGATATGTTGAAAATATTTCTTTAAGAGTGGTGTTTACTACTGGGGC
TGGGCCGGGGTTTCATCTTGCAAGCGGACCCACCATGCAGGAGCGAGCCC
TGTTTTTTGCGCAAAGTCCGCGGTTCCAACATACTACAAGAAGGGCGTTC
GCCCGGGGGGGATTTTCTTGCATTAACTCGCAGTAGGTTATAGTGTGTTA
CAGTAGCTTGCATATGTTCATCGTGGCTCTCGCACGCAACCCATTACACG
TCGAGAGGAGGAATACTCGAGGGAATCGTTTGGAGGTGCTTCGGCAGATG
TACCATGGCCGGAGGTTTTTCAGAGTTATCGGCAAGGCAAAAAAGCAAGC
GCGGCGACCCTGAGCGCTTAGCAAGCGAGGCAGAGCGAGCGCGCTGCTCT
TCGCACACCTTTCCTCCGCATCGTATGTTTGTCAGCTGGTGAGAATTGCA
TGTATCCTGGCCGAGCTCCGACTAAATGGATGAAAAATACTTGACTCGAA
AGCCCATCCCTACCAACGACCGACTGAGAATTTTCCCAGAGAAATTTCTC
AGGGAAGATGAAATGATGAGTTTAGTGGGGACGATGTATTGAGGAGTTAA
GTGTGCACCATCAACACTGTCGAAGCCGGGCTAAGTCATGAACACTACTG
AGCATTCGGCCTTGGTTTCTGAGATGAGAAGGCACCTAAATGGTTACCTC
CCCGCTCTCCACTCACCGGCCACGCCATACGTACGCCAGGGCCGCTCGCG
CTATGGTAGCGGCGTTGTGTTGAGGCGTGCTGCAATAGAGCTAGCACGAT
TTTTTGGCCAGTTTATTTTTCACTGACGAGGCTCCTTAGCTCGGGAACTA
CTTCAGACCGCTGGAATACCATTTACTTGTGTTTTATGACACCCAGGCAT
TAGGGTGGTCCAGCGGGTGGCGCTCTCAGTTTTTTTCGTCTTCAGGTGTT
GGGTGAGGGATATATGGCTTTAACCCCTATCGTAACATGCCTCTGTCCTA
TGATACAGCCCAGGTCAATAATTGACACAGAACGACACAGTTGGGGAAGT
GGGGTGAGCTCAATGAACCCTTCGCCACTGCAAACTATTGACAGCTCCCA
AATTCCAAGGCCTTTGTCCCTGTAAGCGTGGGTGCAGTTCGTTCTTAAGG
GGTTGACCCATTTAGCCCTTAAGATCTGCACTCCCGTCGTGGAGACCCTT
GGCGTCAGAGCCAAGTATAGCGTTCTGCACAGTGCAGCACGAAAGGGTTC
AGTTTTTATTCGATTTGTCCGTCCGCCGGAGGATTAGCAAAACATAATAT
ATGTGTCGGCACACGATGCTTTAGCTATTTGTACATAGGATGATGATCTC
CCCTCCTCTCCGCTACGGTTTCGACAGGCGAGGCTGGAGGAGGCGGCACA
ACTGCTGAGCGAGGCCAAGAATTCCGGGAAGGAGGGGCGTGACTGGCTGG
TCAAGGAGCTAGCCCGTGTCGTTCGGGAGAAAGCCGACCTCGAAACAGGG
GCTCGGGGACGCGAAGAAGACGTCGCAGAGGCGCACCGACAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13773:4008..7299+

>mRNA_M-pyrifera_M_contig13773.6068.1 ID=mRNA_M-pyrifera_M_contig13773.6068.1|Name=mRNA_M-pyrifera_M_contig13773.6068.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1134bp|location=Sequence derived from alignment at M-pyrifera_M_contig13773:4008..7299+ (Macrocystis pyrifera P11B4 male)
ATTCCGGAGGAAATCAATCGGGCCCCCTCCGCCGACCTACGAGACTATTT
CAGATTCCGGAGGAAATCAATCGGGCCCCCTCCGCCGACCTACGAGACTA
TTTCAGCAAATACAACGAGGAGGGAGCAAAGGAAGAGCTGTGCGCGAGAA
AGGAAGCGGCTTTTCGTCGAGATGACCTCGGCATGTCTTCGACGGGCGCG
GAGTTTTCTCCCGTCGCAAGCGCCGAAGAAGCGACAATAAACGATTTGAC
CCTCGGGATGTACGCTCCCAGTAGCTACGCCCTCGTCATTAAGCAAATAC
AACGAGGAGGGAGCAAAGGAAGAGCTGTGCGCGAGAAAGGAAGCGGCTTT
TCGTCGAGATGACCTCGGCATGTCTTCGACGGGCGCGGAGTTTTCTCCCG
TCGCAAGCGCCGAAGAAGCGACAATAAACGATTTGACCCTCGGGATGTAC
GCTCCCAGTAGCTACGCCCTCGTCATTAAGCCTTGCGATGCCTGCCTCGG
CGTGACGACCTTCATCTGCAAACGAAACCGCCGCGTGAACGAGGCCTTGA
AACTCCTCGACTCCGCGGAGCGCCTGGAAGAAGGCATGGCGGATCTGACC
GCGACGAACGCGAAATTGTTGAACAGGGCTCTTTTGGCAGAGCCTTGCGA
TGCCTGCCTCGGCGTGACGACCTTCATCTGCAAACGAAACCGCCGCGTGA
ACGAGGCCTTGAAACTCCTCGACTCCGCGGAGCGCCTGGAAGAAGGCATG
GCGGATCTGACCGCGACGAACGCGAAATTGTTGAACAGGGCTCTTTTGGC
AGAGGCGAGGCTGGAGGAGGCGGCACAACTGCTGAGCGAGGCCAAGAATT
CCGGGAAGGAGGGGCGTGACTGGCTGGTCAAGGAGCTAGCCCGTGTCGTT
CGGGAGAAAGCCGACCTCGAAACAGGGGCTCGGGGACGCGAAGAAGACGT
CGCAGAGGCGCACCGACAAGCGAGGCTGGAGGAGGCGGCACAACTGCTGA
GCGAGGCCAAGAATTCCGGGAAGGAGGGGCGTGACTGGCTGGTCAAGGAG
CTAGCCCGTGTCGTTCGGGAGAAAGCCGACCTCGAAACAGGGGCTCGGGG
ACGCGAAGAAGACGTCGCAGAGGCGCACCGACAA
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