mRNA_M-pyrifera_M_contig13746.6056.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13746.6056.1
Unique NamemRNA_M-pyrifera_M_contig13746.6056.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13746.6056.1 vs. uniprot
Match: D8LJQ1_ECTSI (Polyprenol reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJQ1_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.470e-35
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1
Query:   16 YAMPTQGWFQYVSCPHYFAELLIYISFMLMAGWDGGGPSQGYVVALLWVFANQALVAGHSHAWYKSKFEDYPPSRKRLIPGVW 264
            YA+PT GWF+YVSCPHYFAELL+Y SF+L+  + G G  QGY+VA  WVFANQALVAG   AWY+ KFEDYP  R+RLIPGVW
Sbjct:  236 YAIPTAGWFRYVSCPHYFAELLVYGSFVLLGSFKGRGLGQGYLVAFAWVFANQALVAGWVQAWYQQKFEDYPRDRRRLIPGVW 318          
BLAST of mRNA_M-pyrifera_M_contig13746.6056.1 vs. uniprot
Match: A0A087UJP6_STEMI (Polyprenol reductase (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087UJP6_STEMI)

HSP 1 Score: 89.7 bits (221), Expect = 8.160e-21
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    1 VSTSTYAMPTQGWFQYVSCPHYFAELLIYISFMLMAGWDGGGPSQGYVVALLWVFANQALVAGHSHAWYKSKFEDYPPSRKRLIPGV 261
            VST+ Y MP  G+F+YVSCPHYFAE+L+Y+S  L+ G    G S  + +  LWV  NQ L    SH WY+ KFE+YPP RK +IP +
Sbjct:   78 VSTAHY-MPCGGFFEYVSCPHYFAEILMYLSGCLILG----GKSYTWWLLCLWVVTNQILTGLMSHQWYQQKFENYPPKRKAVIPFI 159          
BLAST of mRNA_M-pyrifera_M_contig13746.6056.1 vs. uniprot
Match: R7UW84_CAPTE (Polyprenol reductase n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UW84_CAPTE)

HSP 1 Score: 87.4 bits (215), Expect = 9.490e-19
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 VSTSTYAMPTQGWFQYVSCPHYFAELLIYISFMLMAGWDGGGPSQGYVVALLWVFANQALVAGHSHAWYKSKFEDYPPSRKRLIPGVW 264
            V T T+ +P  GWF+YVSCPHYF E+LIY +F ++AG+     +      +++V+ANQA+ A  SH WYK  F+DYP  R+ LIP ++
Sbjct:  219 VRTLTHHIPRGGWFEYVSCPHYFMEVLIYTAFGMVAGFS----NLTVWSVVIFVYANQAIAARVSHNWYKDTFKDYPKQRRALIPFIF 302          
BLAST of mRNA_M-pyrifera_M_contig13746.6056.1 vs. uniprot
Match: A0A835Z372_9STRA (Polyprenol reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z372_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.210e-18
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    7 TSTYAMPTQGWFQYVSCPHYFAELLIYISFMLMAGWDGGGPSQGYVVALLWVFANQALVAGHSHAWYKSKFEDYPPSRKRLIPGVW 264
            T++Y +PT G F  VSCPHYF E+ +Y SF+++ G    G     V+ L+WV  N ++ A H HAWY S  +DYP  R+RL+P +W
Sbjct:  214 TASYRIPTAGLFSEVSCPHYFWEIALYASFVMITG----GQVCSVVLMLVWVITNLSINAAHMHAWYWSHLKDYPVRRRRLVPFLW 295          
BLAST of mRNA_M-pyrifera_M_contig13746.6056.1 vs. uniprot
Match: UPI0015A8AC61 (polyprenol reductase-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A8AC61)

HSP 1 Score: 85.5 bits (210), Expect = 5.210e-18
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 VSTSTYAMPTQGWFQYVSCPHYFAELLIYISFMLMAGWDGGGPSQGYVVALLWVFANQALVAGHSHAWYKSKFEDYPPSRKRLIPGV 261
            VST+ Y MP  G+F+YVSCPHYFAE+++Y+S  L+ G    G S  + +  LWV  NQ L    SH WY+ KFE+YP  RK +IP +
Sbjct:  223 VSTAHY-MPCGGFFEYVSCPHYFAEIVMYLSGCLILG----GKSYTWWLLCLWVVTNQVLTGLMSHQWYRQKFENYPLKRKAVIPFI 304          
BLAST of mRNA_M-pyrifera_M_contig13746.6056.1 vs. uniprot
Match: UPI001C40D8E7 (polyprenol reductase n=1 Tax=Solea senegalensis TaxID=28829 RepID=UPI001C40D8E7)

HSP 1 Score: 85.5 bits (210), Expect = 5.600e-18
Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 VSTSTYAMPTQGWFQYVSCPHYFAELLIYISFMLMAGWDGGGPSQGYVVALLWVFANQALVAGHSHAWYKSKFEDYPPSRKRLIPGVW 264
            V T  Y+MP  GWF+ VSCPHYFAELLIYIS  L+ G    G S  + + +L+V  NQAL A   H +Y SK+E YP  RK  IP V+
Sbjct:  228 VETLAYSMPKGGWFELVSCPHYFAELLIYISLSLVLG----GLSLTWWLVVLYVLFNQALAAQLCHDFYVSKYELYPKHRKAFIPFVF 311          
BLAST of mRNA_M-pyrifera_M_contig13746.6056.1 vs. uniprot
Match: A0A6P3VPX1_CLUHA (Polyprenol reductase n=2 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3VPX1_CLUHA)

HSP 1 Score: 85.5 bits (210), Expect = 5.730e-18
Identity = 45/87 (51.72%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 VSTSTYAMPTQGWFQYVSCPHYFAELLIYISFMLMAGWDGGGPSQGYVVALLWVFANQALVAGHSHAWYKSKFEDYPPSRKRLIPGV 261
            V T  + MP   WF  VSCPHYFAELLIY+S  L  G    G S  + + +L+V  NQAL A   H +Y+SKFE+YPP RK  IP V
Sbjct:  230 VETLAHHMPHGCWFDLVSCPHYFAELLIYVSMALCLG----GASVTWWLVVLYVLFNQALAAQLCHEFYQSKFEEYPPQRKAFIPFV 312          
BLAST of mRNA_M-pyrifera_M_contig13746.6056.1 vs. uniprot
Match: A0A1A8BLN3_9TELE (Polyprenol reductase (Fragment) n=13 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8BLN3_9TELE)

HSP 1 Score: 85.5 bits (210), Expect = 7.310e-18
Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 VSTSTYAMPTQGWFQYVSCPHYFAELLIYISFMLMAGWDGGGPSQGYVVALLWVFANQALVAGHSHAWYKSKFEDYPPSRKRLIPGVW 264
            V T  + MPT GWF+ VSCPHYFAELLIYISF L+ G    G S  + + +L+V  NQAL     H  Y SKF  YP  RK +IP V+
Sbjct:  253 VETLAHRMPTGGWFELVSCPHYFAELLIYISFSLVFG----GLSLTWWLVVLYVLFNQALAGQLCHELYVSKFHSYPKHRKVIIPFVF 336          
BLAST of mRNA_M-pyrifera_M_contig13746.6056.1 vs. uniprot
Match: UPI0006B0B8A2 (polyprenol reductase-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0B8A2)

HSP 1 Score: 85.1 bits (209), Expect = 7.360e-18
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 VSTSTYAMPTQGWFQYVSCPHYFAELLIYISFMLMAGWDGGGPSQGYVVALLWVFANQALVAGHSHAWYKSKFEDYPPSRKRLIPGV 261
            V T  + +P+ GWF +VSCPHYFAE++IY++  L+ G    G    + +  LWV  NQ L A  SH WYKS F++YP +R+ ++P +
Sbjct:  223 VVTYHHQLPSGGWFDWVSCPHYFAEIVIYMAMNLILG----GHHGNWWLVCLWVICNQVLAAIMSHHWYKSNFKEYPKTRRAIVPFI 305          
BLAST of mRNA_M-pyrifera_M_contig13746.6056.1 vs. uniprot
Match: A0A061SJL0_9CHLO (Polyprenol reductase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SJL0_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 1.090e-17
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   16 YAMPTQGWFQYVSCPHYFAELLIYISFMLMAGWDGGGPSQGYVVALLWVFANQALVAGHSHAWYKSKFEDYPPSRKRLIPGV 261
            Y +P  GWF+ VSCPHY AE+++YI  +L  G      S G  + LLWV  N +  A  +H WY+  F DYP  R+ +IPG+
Sbjct:  110 YGLPRGGWFELVSCPHYLAEIVLYIGIVLFQG-----VSAGAFLMLLWVVVNLSFTAMATHTWYRKNFIDYPRERRAIIPGI 186          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13746.6056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJQ1_ECTSI1.470e-3569.88Polyprenol reductase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A087UJP6_STEMI8.160e-2151.72Polyprenol reductase (Fragment) n=1 Tax=Stegodyphu... [more]
R7UW84_CAPTE9.490e-1946.59Polyprenol reductase n=1 Tax=Capitella teleta TaxI... [more]
A0A835Z372_9STRA1.210e-1845.35Polyprenol reductase n=1 Tax=Tribonema minus TaxID... [more]
UPI0015A8AC615.210e-1849.43polyprenol reductase-like n=1 Tax=Stegodyphus dumi... [more]
UPI001C40D8E75.600e-1852.27polyprenol reductase n=1 Tax=Solea senegalensis Ta... [more]
A0A6P3VPX1_CLUHA5.730e-1851.72Polyprenol reductase n=2 Tax=Clupea harengus TaxID... [more]
A0A1A8BLN3_9TELE7.310e-1852.27Polyprenol reductase (Fragment) n=13 Tax=Nothobran... [more]
UPI0006B0B8A27.360e-1843.68polyprenol reductase-like n=1 Tax=Limulus polyphem... [more]
A0A061SJL0_9CHLO1.090e-1743.90Polyprenol reductase n=1 Tax=Tetraselmis sp. GSL01... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13746contigM-pyrifera_M_contig13746:4691..4957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue5.8e-28
Seed eggNOG ortholog2880.D8LJQ1
Preferred nameSRD5A3
KEGG rclassRC00145
KEGG koko:K12345
KEGG ReactionR02208,R02497,R08954,R10242
KEGG Pathwayko00140,map00140
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003865,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0006066,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006489,GO:0006490,GO:0006629,GO:0006644,GO:0006694,GO:0006702,GO:0006720,GO:0006793,GO:0006796,GO:0006807,GO:0007124,GO:0008150,GO:0008152,GO:0008202,GO:0008209,GO:0008299,GO:0008300,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010817,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0016049,GO:0016093,GO:0016094,GO:0016095,GO:0016229,GO:0016491,GO:0016627,GO:0016628,GO:0019348,GO:0019408,GO:0019538,GO:0019637,GO:0030176,GO:0030447,GO:0031224,GO:0031227,GO:0031984,GO:0033765,GO:0034645,GO:0034754,GO:0036211,GO:0040007,GO:0042175,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044182,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046164,GO:0046165,GO:0046465,GO:0055114,GO:0065007,GO:0065008,GO:0070085,GO:0070783,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617
EggNOG free text desc.polyprenol reductase activity
EggNOG OGsKOG1640@1,KOG1640@2759
Ec32 ortholog description3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal
Ec32 orthologEc-17_002880.1
EC1.3.1.22,1.3.1.94
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size267
Cds size246
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.1559348-UTR-M-pyrifera_M_contig13746:4690..47111622815825.1559348-UTR-M-pyrifera_M_contig13746:4690..4711Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13746 4691..4711 +
1692277590.6755724-UTR-M-pyrifera_M_contig13746:4690..47111692277590.6755724-UTR-M-pyrifera_M_contig13746:4690..4711Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13746 4691..4711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.1673942-CDS-M-pyrifera_M_contig13746:4711..49571622815825.1673942-CDS-M-pyrifera_M_contig13746:4711..4957Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13746 4712..4957 +
1692277590.69273-CDS-M-pyrifera_M_contig13746:4711..49571692277590.69273-CDS-M-pyrifera_M_contig13746:4711..4957Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13746 4712..4957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13746.6056.1prot_M-pyrifera_M_contig13746.6056.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13746 4712..4957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13746.6056.1

>prot_M-pyrifera_M_contig13746.6056.1 ID=prot_M-pyrifera_M_contig13746.6056.1|Name=mRNA_M-pyrifera_M_contig13746.6056.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MPTQGWFQYVSCPHYFAELLIYISFMLMAGWDGGGPSQGYVVALLWVFAN
QALVAGHSHAWYKSKFEDYPPSRKRLIPGVW*
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mRNA from alignment at M-pyrifera_M_contig13746:4691..4957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13746.6056.1 ID=mRNA_M-pyrifera_M_contig13746.6056.1|Name=mRNA_M-pyrifera_M_contig13746.6056.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig13746:4691..4957+ (Macrocystis pyrifera P11B4 male)
GTAAGCACGAGCACCTACGCCATGCCAACGCAGGGGTGGTTCCAGTATGT CTCCTGCCCTCACTACTTCGCAGAGCTACTCATTTACATCTCCTTCATGC TCATGGCGGGGTGGGATGGAGGCGGGCCGAGCCAGGGGTACGTGGTAGCC CTCCTTTGGGTTTTCGCGAACCAGGCCCTGGTGGCTGGTCACTCGCACGC GTGGTACAAGAGCAAGTTTGAGGACTACCCGCCCAGTAGGAAGAGGCTCA TCCCAGGGGTGTGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13746:4691..4957+

>mRNA_M-pyrifera_M_contig13746.6056.1 ID=mRNA_M-pyrifera_M_contig13746.6056.1|Name=mRNA_M-pyrifera_M_contig13746.6056.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig13746:4691..4957+ (Macrocystis pyrifera P11B4 male)
ATGCCAACGCAGGGGTGGTTCCAGTATGTCTCCTGCCCTCACTACTTCGC
AGAGCTACTCATTTACATCTCCTTCATGCTCATGGCGGGGTGGGATGGAG
GCGGGCCGAGCCAGGGGTACGTGGTAGCCCTCCTTTGGGTTTTCGCGAAC
CAGGCCCTGGTGGCTGGTCACTCGCACGCGTGGTACAAGAGCAAGTTTGA
GGACTACCCGCCCAGTAGGAAGAGGCTCATCCCAGGGGTGTGGTGAATGC
CAACGCAGGGGTGGTTCCAGTATGTCTCCTGCCCTCACTACTTCGCAGAG
CTACTCATTTACATCTCCTTCATGCTCATGGCGGGGTGGGATGGAGGCGG
GCCGAGCCAGGGGTACGTGGTAGCCCTCCTTTGGGTTTTCGCGAACCAGG
CCCTGGTGGCTGGTCACTCGCACGCGTGGTACAAGAGCAAGTTTGAGGAC
TACCCGCCCAGTAGGAAGAGGCTCATCCCAGGGGTGTGGTGA
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