mRNA_M-pyrifera_M_contig13674.6027.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13674.6027.1
Unique NamemRNA_M-pyrifera_M_contig13674.6027.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13674.6027.1 vs. uniprot
Match: D8LI17_ECTSI (Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI17_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 6.250e-57
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 1 
Query:   28 VTKLNAAISSNSELQGKSLEEIMATSTGGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIEKEYGSFADFKKAFGDTAAGHFGSGWAWLVKTNEGGVKV 333
            VTKLNAAIS+NSEL+GKSL+EIM T++GGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIE+++GSF  FKKAF DTAAGHFGSGWAWLVKT  GGV V
Sbjct:   36 VTKLNAAISTNSELEGKSLDEIMKTASGGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIEEKFGSFEAFKKAFSDTAAGHFGSGWAWLVKTESGGVDV 137
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BLAST of mRNA_M-pyrifera_M_contig13674.6027.1 vs. uniprot
Match: A0A356T2V4_9DELT (Superoxide dismutase n=2 Tax=Myxococcales TaxID=29 RepID=A0A356T2V4_9DELT)

HSP 1 Score: 143 bits (361), Expect = 3.280e-41
Identity = 62/98 (63.27%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:   28 VTKLNAAISSNSELQGKSLEEIMATSTGGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIEKEYGSFADFKKAFGDTAAGHFGSGWAWLVKTNEG 321
            V KLN A+  ++ LQGKSLE+++ T  GGVFNNAAQVWNHTFYW SLSP+GGGEPTG + +AI+K +GSF+DFK+ F   A+GHF SGWAW+V + +G
Sbjct:   36 VNKLNKAVEDDASLQGKSLEDLIKTQKGGVFNNAAQVWNHTFYWNSLSPNGGGEPTGKIADAIKKSFGSFSDFKEQFSKAASGHFASGWAWVVTSGDG 133
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BLAST of mRNA_M-pyrifera_M_contig13674.6027.1 vs. uniprot
Match: A0A2T4D4F0_9GAMM (Superoxide dismutase n=2 Tax=Pseudidiomarina aestuarii TaxID=624146 RepID=A0A2T4D4F0_9GAMM)

HSP 1 Score: 142 bits (359), Expect = 7.200e-41
Identity = 65/102 (63.73%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:   28 VTKLNAAISSNSELQGKSLEEIMATSTGGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIEKEYGSFADFKKAFGDTAAGHFGSGWAWLVKTNEGGVKV 333
            VTKLN A+   ++L+ KSLE+++ T++GG+FNNAAQVWNHTFYW  LSP+GGGEPTGA+ +AI K++GSFA FK+ F   AAG+FGSGW WLVKT +GGV +
Sbjct:   36 VTKLNDAVKG-TDLENKSLEDVIKTASGGLFNNAAQVWNHTFYWHCLSPNGGGEPTGALADAINKKFGSFAKFKEEFSAQAAGNFGSGWTWLVKTADGGVDI 136
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BLAST of mRNA_M-pyrifera_M_contig13674.6027.1 vs. uniprot
Match: A0A2S2E4D9_9ALTE (Superoxide dismutase n=1 Tax=Saliniradius amylolyticus TaxID=2183582 RepID=A0A2S2E4D9_9ALTE)

HSP 1 Score: 141 bits (356), Expect = 1.990e-40
Identity = 65/102 (63.73%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:   28 VTKLNAAISSNSELQGKSLEEIMATSTGGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIEKEYGSFADFKKAFGDTAAGHFGSGWAWLVKTNEGGVKV 333
            VTKLN  +   ++++ KSLEEI+ +S GGVFNNAAQVWNHTFYW S+SP+GGGEP+GAV EAI  ++GSFADFK+AF D AA +FGSGW WLVK  +G + +
Sbjct:   36 VTKLNGLVEG-TDMENKSLEEIIKSSEGGVFNNAAQVWNHTFYWHSMSPNGGGEPSGAVAEAINSKWGSFADFKEAFNDKAANNFGSGWTWLVKKADGSLDI 136
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BLAST of mRNA_M-pyrifera_M_contig13674.6027.1 vs. uniprot
Match: A0A7Y0Q884_9GAMM (Superoxide dismutase n=6 Tax=Thalassotalea TaxID=1518149 RepID=A0A7Y0Q884_9GAMM)

HSP 1 Score: 141 bits (355), Expect = 2.820e-40
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:   28 VTKLNAAISSNSELQGKSLEEIMATSTGGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIEKEYGSFADFKKAFGDTAAGHFGSGWAWLVKTNEGGVKV 333
            V KLN  I   +E +GKSLE+I+ +S GGVFNNAAQ+WNHTFYW SLSP+GGGEPTGA+ +AI  ++GSFA+FK AF D A  +FGS W WLVKT +GGV +
Sbjct:   36 VVKLNGLIGG-TEFEGKSLEDIVKSSDGGVFNNAAQIWNHTFYWNSLSPNGGGEPTGALADAINAKFGSFAEFKAAFNDKAVNNFGSSWTWLVKTADGGVDI 136
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BLAST of mRNA_M-pyrifera_M_contig13674.6027.1 vs. uniprot
Match: A0A2N5Y3R4_9GAMM (Superoxide dismutase n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y3R4_9GAMM)

HSP 1 Score: 141 bits (355), Expect = 2.820e-40
Identity = 67/102 (65.69%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:   28 VTKLNAAISSNSELQGKSLEEIMATSTGGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIEKEYGSFADFKKAFGDTAAGHFGSGWAWLVKTNEGGVKV 333
            V KLN  I   +E +GKSLE+I+ TS GGVFNNAAQVWNHTFYW  +SP GGGEPTG V  AI+  +GSFADFK+AF D+A  +FGSGW WLVKTN+G V +
Sbjct:   36 VEKLNGLIPG-TEFEGKSLEDIIRTSDGGVFNNAAQVWNHTFYWHCMSPDGGGEPTGDVAAAIDDAFGSFADFKQAFTDSAVSNFGSGWTWLVKTNDGTVTI 136
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BLAST of mRNA_M-pyrifera_M_contig13674.6027.1 vs. uniprot
Match: A0A7S2V2G5_9STRA (Superoxide dismutase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G5_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.990e-40
Identity = 62/102 (60.78%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:   28 VTKLNAAISSNSELQGKSLEEIMATSTGGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIEKEYGSFADFKKAFGDTAAGHFGSGWAWLVKTNEGGVKV 333
            VTKLNAA+   SE +GKSLEEIM  ++GG+FNNAAQ+WNHTFYW S+SP+GGGEP+G + +AI   +GSF  FK+ F  +A GHFGSGWAWL K ++G +++
Sbjct:   36 VTKLNAALPG-SEFEGKSLEEIMMNASGGMFNNAAQIWNHTFYWNSMSPNGGGEPSGPISDAINSSFGSFESFKEKFSASAGGHFGSGWAWLCKKDDGSLEI 136
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BLAST of mRNA_M-pyrifera_M_contig13674.6027.1 vs. uniprot
Match: A0A7C7YMU4_9ARCH (Superoxide dismutase n=2 Tax=Archaea TaxID=2157 RepID=A0A7C7YMU4_9ARCH)

HSP 1 Score: 140 bits (353), Expect = 5.510e-40
Identity = 62/102 (60.78%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:   28 VTKLNAAISSNSELQGKSLEEIMATSTGGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIEKEYGSFADFKKAFGDTAAGHFGSGWAWLVKTNEGGVKV 333
            V KLNAAI+  +EL+GK+LEE++ + +GG+FNNAAQ+WNHTFYW S+SP+GGGEPTGA+   I++ +GSF +FK AF   A GHFGSGWAWLV  + GG+++
Sbjct:   36 VGKLNAAIAG-TELEGKTLEELIMSQSGGIFNNAAQIWNHTFYWNSMSPNGGGEPTGAIAGKIDETFGSFEEFKTAFTAAAGGHFGSGWAWLVMNSNGGLEI 136
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BLAST of mRNA_M-pyrifera_M_contig13674.6027.1 vs. uniprot
Match: A0A327X583_9GAMM (Superoxide dismutase n=3 Tax=Aliidiomarina TaxID=1249554 RepID=A0A327X583_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 1.140e-39
Identity = 65/102 (63.73%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:   28 VTKLNAAISSNSELQGKSLEEIMATSTGGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIEKEYGSFADFKKAFGDTAAGHFGSGWAWLVKTNEGGVKV 333
            V KLNA +   SE  GKSLE+I+ +S+GG+FNNAAQVWNHTFYW  LSP+GGGEPTGAV +AI+K++GSF  FK+ F + A G+F SGW WLVKT +GGV++
Sbjct:   36 VDKLNAQVEG-SEYAGKSLEDIIKSSSGGLFNNAAQVWNHTFYWNCLSPNGGGEPTGAVADAIKKKFGSFDKFKEEFTNQAIGNFASGWTWLVKTKDGGVEI 136
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BLAST of mRNA_M-pyrifera_M_contig13674.6027.1 vs. uniprot
Match: A0A3N5ZB13_9ALTE (Superoxide dismutase n=5 Tax=Alteromonadaceae TaxID=72275 RepID=A0A3N5ZB13_9ALTE)

HSP 1 Score: 139 bits (351), Expect = 1.170e-39
Identity = 63/102 (61.76%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:   28 VTKLNAAISSNSELQGKSLEEIMATSTGGVFNNAAQVWNHTFYWKSLSPSGGGEPTGAVKEAIEKEYGSFADFKKAFGDTAAGHFGSGWAWLVKTNEGGVKV 333
            VTKLN  +   ++++ KSLEEI+ TS+GGVFNNAAQ+WNHTFYW SLSP+GGGEPTGA+ +AI  ++GSF DFK AF D A  +FGS W WLVKT +G + +
Sbjct:   36 VTKLNGLVEG-TDMENKSLEEIVKTSSGGVFNNAAQIWNHTFYWHSLSPNGGGEPTGAIADAINAKWGSFEDFKAAFNDKAVNNFGSSWTWLVKTADGSLDI 136
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13674.6027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI17_ECTSI6.250e-5785.29Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A356T2V4_9DELT3.280e-4163.27Superoxide dismutase n=2 Tax=Myxococcales TaxID=29... [more]
A0A2T4D4F0_9GAMM7.200e-4163.73Superoxide dismutase n=2 Tax=Pseudidiomarina aestu... [more]
A0A2S2E4D9_9ALTE1.990e-4063.73Superoxide dismutase n=1 Tax=Saliniradius amylolyt... [more]
A0A7Y0Q884_9GAMM2.820e-4063.73Superoxide dismutase n=6 Tax=Thalassotalea TaxID=1... [more]
A0A2N5Y3R4_9GAMM2.820e-4065.69Superoxide dismutase n=1 Tax=Kineobactrum sedimini... [more]
A0A7S2V2G5_9STRA2.990e-4060.78Superoxide dismutase n=1 Tax=Fibrocapsa japonica T... [more]
A0A7C7YMU4_9ARCH5.510e-4060.78Superoxide dismutase n=2 Tax=Archaea TaxID=2157 Re... [more]
A0A327X583_9GAMM1.140e-3963.73Superoxide dismutase n=3 Tax=Aliidiomarina TaxID=1... [more]
A0A3N5ZB13_9ALTE1.170e-3961.76Superoxide dismutase n=5 Tax=Alteromonadaceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13674contigM-pyrifera_M_contig13674:7667..8567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue6.1e-44
Seed eggNOG ortholog2880.D8LI17
Preferred nameSODB1
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity, acting on superoxide radicals as acceptor
EggNOG OGsCOG0605@1,KOG0876@2759
Ec32 ortholog descriptionManganese/iron superoxide dismutase, N-terminal
Ec32 orthologEc-04_002870.1
EC1.15.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.6379783-CDS-M-pyrifera_M_contig13674:7666..78011622815822.6379783-CDS-M-pyrifera_M_contig13674:7666..7801Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13674 7667..7801 +
1692277589.1364613-CDS-M-pyrifera_M_contig13674:7666..78011692277589.1364613-CDS-M-pyrifera_M_contig13674:7666..7801Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13674 7667..7801 +
1622815822.6525578-CDS-M-pyrifera_M_contig13674:8363..85671622815822.6525578-CDS-M-pyrifera_M_contig13674:8363..8567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13674 8364..8567 +
1692277589.1470988-CDS-M-pyrifera_M_contig13674:8363..85671692277589.1470988-CDS-M-pyrifera_M_contig13674:8363..8567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13674 8364..8567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13674.6027.1prot_M-pyrifera_M_contig13674.6027.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13674 7667..8567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13674.6027.1

>prot_M-pyrifera_M_contig13674.6027.1 ID=prot_M-pyrifera_M_contig13674.6027.1|Name=mRNA_M-pyrifera_M_contig13674.6027.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MYCLILFKDVTKLNAAISSNSELQGKSLEEIMATSTGGVFNNAAQVWNHT
FYWKSLSPSGGGEPTGAVKEAIEKEYGSFADFKKAFGDTAAGHFGSGWAW
LVKTNEGGVKVGG
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mRNA from alignment at M-pyrifera_M_contig13674:7667..8567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13674.6027.1 ID=mRNA_M-pyrifera_M_contig13674.6027.1|Name=mRNA_M-pyrifera_M_contig13674.6027.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=901bp|location=Sequence derived from alignment at M-pyrifera_M_contig13674:7667..8567+ (Macrocystis pyrifera P11B4 male)
ATGTATTGTCTTATTCTGTTTAAAGACGTGACAAAGCTCAACGCAGCGAT
CTCTAGCAACTCCGAGCTGCAGGGCAAGTCTCTGGAGGAGATCATGGCCA
CTTCTACCGGCGGAGTGTTCAACAACGCCGCTCAGGTGAAACGACATTAA
TTTCGCCGCTTTTGACGAGAGCAATAGAATAGCAATATAGACGAGGCGTA
ATACGCAGCTTGCAAAGTTTGAGTTACCAACTATTCAATCAGTCGAACTC
ACAGCTGACGTATTTCGAAATTTATAAAATAGCAGCACGCGCGTGGGTGG
GTGGGTGGACATTAATTAGCTCGACGTCTTTTATGTCTTTTTAACAGCAG
TCGACCGTGCAAATAAATTTCACACAGTTTTTGGTGTGAGTATGAGTATC
GTATAGGACCGGTATGATTTTTGTCATTGTTGTTGTTGTTGTTTATTTCG
TTTTTTTTTGTATGCTACGACATAAGAAGCGGATATTACACCAATAAGCT
CGCAAACATAGTTTTTTAAGCATTTTTTTGGGACTGCAGTCCCGTTTTGG
GGAGACACGACTTGAAAAAATGAGTGATTCGTCACCGAAAACGGGACTCT
GCGGTTCTAAAATGGTTCTGAGGGGTTTTTTTGCGGTTCTCTCACAGCTG
AGGCGCTTTTTTCTTTTATTTACCTGGTATAACATACGGAATCGAAGGTG
TGGAACCACACCTTCTACTGGAAGTCCCTTAGCCCCAGCGGGGGCGGCGA
GCCGACGGGCGCCGTCAAGGAGGCCATCGAGAAGGAGTACGGCAGCTTCG
CTGACTTCAAGAAGGCTTTCGGAGACACGGCGGCGGGACACTTCGGCTCC
GGGTGGGCTTGGCTCGTCAAGACCAACGAAGGAGGGGTGAAGGTGGGAGG
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13674:7667..8567+

>mRNA_M-pyrifera_M_contig13674.6027.1 ID=mRNA_M-pyrifera_M_contig13674.6027.1|Name=mRNA_M-pyrifera_M_contig13674.6027.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig13674:7667..8567+ (Macrocystis pyrifera P11B4 male)
ATGTATTGTCTTATTCTGTTTAAAGACGTGACAAAGCTCAACGCAGCGAT
CTCTAGCAACTCCGAGCTGCAGGGCAAGTCTCTGGAGGAGATCATGGCCA
CTTCTACCGGCGGAGTGTTCAACAACGCCGCTCAGATGTATTGTCTTATT
CTGTTTAAAGACGTGACAAAGCTCAACGCAGCGATCTCTAGCAACTCCGA
GCTGCAGGGCAAGTCTCTGGAGGAGATCATGGCCACTTCTACCGGCGGAG
TGTTCAACAACGCCGCTCAGGTGTGGAACCACACCTTCTACTGGAAGTCC
CTTAGCCCCAGCGGGGGCGGCGAGCCGACGGGCGCCGTCAAGGAGGCCAT
CGAGAAGGAGTACGGCAGCTTCGCTGACTTCAAGAAGGCTTTCGGAGACA
CGGCGGCGGGACACTTCGGCTCCGGGTGGGCTTGGCTCGTCAAGACCAAC
GAAGGAGGGGTGAAGGTGGGAGGAGTGTGGAACCACACCTTCTACTGGAA
GTCCCTTAGCCCCAGCGGGGGCGGCGAGCCGACGGGCGCCGTCAAGGAGG
CCATCGAGAAGGAGTACGGCAGCTTCGCTGACTTCAAGAAGGCTTTCGGA
GACACGGCGGCGGGACACTTCGGCTCCGGGTGGGCTTGGCTCGTCAAGAC
CAACGAAGGAGGGGTGAAGGTGGGAGGA
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