mRNA_M-pyrifera_M_contig136.6013.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig136.6013.1
Unique NamemRNA_M-pyrifera_M_contig136.6013.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig136.6013.1 vs. uniprot
Match: D7G823_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G823_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 3.490e-108
Identity = 186/271 (68.63%), Postives = 207/271 (76.38%), Query Frame = 1 
Query:    1 RNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVTLKRSSQGNGIGSGNGRHGNGGNGH-------------MGGDTAAKRRGRNTSVTAIKRLLPTANEQANEQSRWDATAAFRFPLPEEASPYVLAYGDGAYELVMGGYGDGGVAGRVGMGKGSQGPPQCVRIAVWRKQFLADQRLGEVEVPLSKLIYRGGVDEWVGLRGDKGSAWFVNVRFSLRFVMVSVSDPLPDDGIDDEEGVAP-----DSPGITLSNALADVDMM 759
            RNALFRRLRLPHRFQALV+VQLLGLKNLSPHYHP+KTDVFAAV+LKR                GGNG+                + AAKRRGRNTSVTAIKRLLPTAN Q ++QSRW A AAFRFPLPEEASP VLAYGDGAYELVMGG G GG+        GSQGPP+CVRIAVWRKQFLADQRLGEV+VPL KL  RG +DEWV LRGDKGS+WFVNVRFSLRFVMVSVSDP+PD+  +D E +A      ++PG+TLS ALADVD++
Sbjct:  279 RNALFRRLRLPHRFQALVSVQLLGLKNLSPHYHPAKTDVFAAVSLKRLDM----------TAAGGNGNDXXXXXXXXXXXXXXXEAAAKRRGRNTSVTAIKRLLPTANGQESQQSRWGAKAAFRFPLPEEASPLVLAYGDGAYELVMGGTGKGGM--------GSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGKLDDRGDIDEWVALRGDKGSSWFVNVRFSLRFVMVSVSDPVPDE--EDSEDLAAVAVEEENPGMTLSFALADVDII 529
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BLAST of mRNA_M-pyrifera_M_contig136.6013.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 349 bits (895), Expect = 7.810e-107
Identity = 189/257 (73.54%), Postives = 209/257 (81.32%), Query Frame = 1 
Query:    1 RNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVTLKRSSQGNGIGSGNGRHG-NGGNGHMGGDTAAKRRGRNTSVTAIKRLLPTANEQANEQSRWDATAAFRFPLPEEASPYVLAYGDGAYELVMGGYGDGGVAGRVGMGKGSQGPPQCVRIAVWRKQFLADQRLGEVEVPLSKLIYRGGVDEWVGLRGDKGSAWFVNVRFSLRFVMVSVSDPLPDDGIDDE---EGVAPDSPGITLSNALADVDMM 759
            RNALFRRLRLPHRFQALV+VQLLGLKNLSPHYHP+KTDVFAAV+LKR        +GNG +      GH GG+ AAKRRGRNTSVTAIKRLLPTAN Q N+QSRW A AAFRFPLPEEASP+VLAYGDGAYELVMGG G GG+        GSQGPP+CVRIAVWRKQFLADQRLGEV+VPL KL  RG +DEWV LRGDKGS+WFVNVRFSLRFVMVSVSDP+PD    ++     V  ++PG+TLS ALADVD+M
Sbjct: 3708 RNALFRRLRLPHRFQALVSVQLLGLKNLSPHYHPAKTDVFAAVSLKRLDMTAAGSNGNGNYAAXXXXGHSGGEAAAKRRGRNTSVTAIKRLLPTANGQENQQSRWGAKAAFRFPLPEEASPFVLAYGDGAYELVMGGTGKGGM--------GSQGPPRCVRIAVWRKQFLADQRLGEVDVPLGKLDDRGDIDEWVALRGDKGSSWFVNVRFSLRFVMVSVSDPVPDQEHSEDLAAVAVEEENPGMTLSYALADVDIM 3956
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BLAST of mRNA_M-pyrifera_M_contig136.6013.1 vs. uniprot
Match: A0A836C890_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C890_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.260e-32
Identity = 89/262 (33.97%), Postives = 124/262 (47.33%), Query Frame = 1 
Query:    1 RNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVTLKRSSQGNGIGSGNGRHGNGGNGHMGGDTAAKRRGRNTSVTAIKRLLPTANEQANEQSRWDATAAFRFPLPEEASPYVLAYGDGAYELVMGGYGDGGVAGRVGMGKGSQGPPQCVRIAVWRKQFLADQRLGEVEVPLSKLIYRGGVDEWVGLRGDK-------------------------GSAWFVNVRFSLRFVMVSVSDPLPDDGIDDEEGVAPD 711
            RNAL RRLRLPHRF ALV V+L  LKNLSPH+     DVFA   L+R +                        + K     ++VT   R++P A  +A  Q  W     FR+ LPE+A P +   G  +   VM          R     G+ GPP  +++AV++K  L+D  LG  EVPL  L     +DEW  L+  K                         GS+WF+N+R +LRFV++ V++P  ++G+D E  +A D
Sbjct:   34 RNALLRRLRLPHRFLALVQVELHDLKNLSPHFQAQPMDVFAVARLQRGASA--------------------PASHKHPTLGSAVTDAHRVVPCAEAKAGRQ--WGGATIFRYALPEDALPLIDVSGALSAPAVM----------RRHPAGGAPGPPSVLQLAVFKKSLLSDDCLGGTEVPLHSLNAHTTLDEWYPLKHVKHKRWGKVGAEGGAGGTWGAGFTXGAGSSWFLNLRITLRFVVMLVAEPPEEEGLDAEVAIAAD 263
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BLAST of mRNA_M-pyrifera_M_contig136.6013.1 vs. uniprot
Match: A0A7S3Y602_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y602_HETAK)

HSP 1 Score: 112 bits (280), Expect = 2.240e-26
Identity = 71/221 (32.13%), Postives = 118/221 (53.39%), Query Frame = 1 
Query:    1 RNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVTLKRSSQGNGIGSGNGRHGNGGNGHMGGDTAAKRRGRNTSVTAIKRLLPTANEQANEQSRWDATAAFRFPLPEEASPYVLAYGDGAYELVMGGYGDGGVAGRVGMGKGSQGPPQCVRIAVWRKQFLADQRLGEVEVPLSKLIYRGGVDEWVGLRGDKGSAWFVNVRFSLRFVMVSVSD 663
            R+ LF RLR+PHR+ ALV  +LL LK L+P   P+K +V+A + L+R  +G+ +   N                 K R  ++ +T  ++++    + ++  + W   AAFRFPLPE    Y+   G   Y   +                 ++G P+ + I V+ K F+ D  LG+VE+PL+ +     +DEW+ LR +KG++WF++V+  LRFV++S+ D
Sbjct:   61 RSLLFARLRMPHRYLALVQAELLDLKKLAPTPSPAKMEVYAVLRLQR--RGSSVVLSN-----------------KTRTLDSVMTQPEKIV---TDSSSRSTPWGGKAAFRFPLPEA---YLRLDGPADYRQAV-----------------NRGAPKVLHICVYSKHFIMDSCLGDVEIPLTAITDNNHLDEWLPLRCEKGTSWFLHVKLRLRFVLMSIVD 239
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BLAST of mRNA_M-pyrifera_M_contig136.6013.1 vs. uniprot
Match: B8CG37_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG37_THAPS)

HSP 1 Score: 82.0 bits (201), Expect = 5.270e-14
Identity = 60/207 (28.99%), Postives = 93/207 (44.93%), Query Frame = 1 
Query:    4 NALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVTLKRSSQGNGIGSGNGRHGNGGNGHMGGDTAA---KRRGRNTSVTAIKRLLPTANEQANEQSRWDATAAFRFPLPEEASPYVLAYGDGAYELVMGGYGDGGVAGRVGMGKGSQGPPQCVRIAVWRKQFLADQRLGEVEVPLSKLIYRGGVDEWVGLR-GDKGSAW 612
            N+LFRRL+LP RF AL+ V+LL LKN++     S    +A + LKR                       G +A    K R  +++ T  +++   +    N  + W +   FRFPLPE+ +    ++      L                    +GPP C+++ V+ K+F++D  LG  +V L  L   G ++EWV LR G  G  W
Sbjct: 3247 NSLFRRLKLPQRFLALIQVELLDLKNVTSPSGTSSLTAYALLRLKRQ----------------------GSSAPLNHKARSLDSACTQARKISKISGP--NAPASWGSLVRFRFPLPEDVNCEGKSFDSDRESLF-------------------KGPPTCLQVTVYEKKFMSDVELGGADVNLESLGSGGQIEEWVPLRVGKDGITW 3410
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig136.6013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G823_ECTSI3.490e-10868.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K928_9PHAE7.810e-10773.54PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836C890_9STRA6.260e-3233.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y602_HETAK2.240e-2632.13Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
B8CG37_THAPS5.270e-1428.99Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig136contigM-pyrifera_M_contig136:156..1438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue4.6e-15
Seed eggNOG ortholog2850.Phatr49814
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.RAVE protein 1 C terminal
EggNOG OGs2XA4N@2836,KOG1064@1,KOG1064@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size762
Cds size762
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815821.359031-CDS-M-pyrifera_M_contig136:155..7661622815821.359031-CDS-M-pyrifera_M_contig136:155..766Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig136 156..766 +
1692277588.3003614-CDS-M-pyrifera_M_contig136:155..7661692277588.3003614-CDS-M-pyrifera_M_contig136:155..766Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig136 156..766 +
1622815821.3716698-CDS-M-pyrifera_M_contig136:1287..14381622815821.3716698-CDS-M-pyrifera_M_contig136:1287..1438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig136 1288..1438 +
1692277588.3125107-CDS-M-pyrifera_M_contig136:1287..14381692277588.3125107-CDS-M-pyrifera_M_contig136:1287..1438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig136 1288..1438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig136.6013.1prot_M-pyrifera_M_contig136.6013.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig136 156..1438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig136.6013.1

>prot_M-pyrifera_M_contig136.6013.1 ID=prot_M-pyrifera_M_contig136.6013.1|Name=mRNA_M-pyrifera_M_contig136.6013.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp
RNALFRRLRLPHRFQALVTVQLLGLKNLSPHYHPSKTDVFAAVTLKRSSQ
GNGIGSGNGRHGNGGNGHMGGDTAAKRRGRNTSVTAIKRLLPTANEQANE
QSRWDATAAFRFPLPEEASPYVLAYGDGAYELVMGGYGDGGVAGRVGMGK
GSQGPPQCVRIAVWRKQFLADQRLGEVEVPLSKLIYRGGVDEWVGLRGDK
GSAWFVNVRFSLRFVMVSVSDPLPDDGIDDEEGVAPDSPGITLSNALADV
DMM*
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mRNA from alignment at M-pyrifera_M_contig136:156..1438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig136.6013.1 ID=mRNA_M-pyrifera_M_contig136.6013.1|Name=mRNA_M-pyrifera_M_contig136.6013.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1283bp|location=Sequence derived from alignment at M-pyrifera_M_contig136:156..1438+ (Macrocystis pyrifera P11B4 male)
AGGAATGCCCTCTTCCGGCGCCTCCGGCTGCCGCACCGCTTCCAAGCCCT
GGTGACCGTTCAACTGCTAGGCCTGAAGAATCTCAGCCCTCACTACCACC
CCTCCAAGACAGACGTTTTTGCTGCGGTGACCCTTAAGCGCTCCAGCCAG
GGAAACGGAATCGGAAGCGGAAACGGCAGACATGGTAACGGAGGAAACGG
ACACATGGGGGGCGACACGGCGGCCAAACGGAGGGGCCGCAATACGTCGG
TAACAGCGATCAAGCGCCTATTACCGACGGCAAACGAACAGGCCAATGAG
CAGTCGCGGTGGGACGCCACGGCCGCTTTCCGCTTCCCTCTTCCGGAGGA
GGCGTCCCCTTACGTTCTCGCGTACGGAGATGGGGCGTACGAGCTCGTGA
TGGGCGGGTACGGCGACGGGGGGGTGGCGGGGAGAGTGGGGATGGGGAAG
GGGAGCCAGGGGCCGCCTCAGTGCGTCCGCATCGCCGTGTGGCGCAAGCA
ATTCCTCGCAGACCAGCGCCTTGGGGAGGTTGAGGTGCCTCTCAGCAAGC
TGATCTATCGCGGAGGCGTGGACGAGTGGGTGGGCCTTCGGGGAGACAAG
GGGTCTGCATGGTGAGTGTCCGGCGGGAGGGGGGGGGGAGATGGGGGTGG
GTACTTATTTGTTTCTTGACTTAGTCATTTGACCATTGACCACGTATCCC
TTCCGGGATGAACCACCGTTCCTACTCCTAATAGAGACAACTACGATAGT
TGAGCGCTCACTAAGTTGTTTTCATATTTTCCGTACTTTTTTTTGCTCGT
TTTATCCCCTTCGTGTTTCGTCGCTTGTGCCGAATGGGGGAGGGGAGGCT
GTTATATGCGGCTTGATCGTGTTATCAATTATTTTTGACGGCGTAGTTGC
TTTTTTTTTTTTTTGTTGCGTCGCATTGTATCGTAGGTATGTTTTTTGTT
CGTGCTGTGAGTGCGAGGCCGGTTGTGAAGCCCCTGCGTGGCCTCGGACT
GCGTTTGCGTCGCGGTCGCCGCCGTCCGATACCATTCACAAACCCTTTTT
TGCCCATAAACATGATTGATCACCACACCTTCACTCGTTCTTACCTCCCC
CCCCCCCCTATTCGTGATAAAACGCCTCGCAGGTTCGTCAACGTCCGGTT
CAGCTTGCGGTTCGTGATGGTGAGCGTGTCCGATCCTCTTCCCGACGATG
GTATCGATGACGAGGAAGGGGTTGCTCCGGACAGCCCAGGAATAACGCTC
TCCAACGCCCTAGCCGACGTCGACATGATGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig136:156..1438+

>mRNA_M-pyrifera_M_contig136.6013.1 ID=mRNA_M-pyrifera_M_contig136.6013.1|Name=mRNA_M-pyrifera_M_contig136.6013.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1524bp|location=Sequence derived from alignment at M-pyrifera_M_contig136:156..1438+ (Macrocystis pyrifera P11B4 male)
AGGAATGCCCTCTTCCGGCGCCTCCGGCTGCCGCACCGCTTCCAAGCCCT
GGTGACCGTTCAACTGCTAGGCCTGAAGAATCTCAGCCCTCACTACCACC
CCTCCAAGACAGACGTTTTTGCTGCGGTGACCCTTAAGCGCTCCAGCCAG
GGAAACGGAATCGGAAGCGGAAACGGCAGACATGGTAACGGAGGAAACGG
ACACATGGGGGGCGACACGGCGGCCAAACGGAGGGGCCGCAATACGTCGG
TAACAGCGATCAAGCGCCTATTACCGACGGCAAACGAACAGGCCAATGAG
CAGTCGCGGTGGGACGCCACGGCCGCTTTCCGCTTCCCTCTTCCGGAGGA
GGCGTCCCCTTACGTTCTCGCGTACGGAGATGGGGCGTACGAGCTCGTGA
TGGGCGGGTACGGCGACGGGGGGGTGGCGGGGAGAGTGGGGATGGGGAAG
GGGAGCCAGGGGCCGCCTCAGTGCGTCCGCATCGCCGTGTGGCGCAAGCA
ATTCCTCGCAGACCAGCGCCTTGGGGAGGTTGAGGTGCCTCTCAGCAAGC
TGATCTATCGCGGAGGCGTGGACGAGTGGGTGGGCCTTCGGGGAGACAAG
GGGTCTGCATGAGGAATGCCCTCTTCCGGCGCCTCCGGCTGCCGCACCGC
TTCCAAGCCCTGGTGACCGTTCAACTGCTAGGCCTGAAGAATCTCAGCCC
TCACTACCACCCCTCCAAGACAGACGTTTTTGCTGCGGTGACCCTTAAGC
GCTCCAGCCAGGGAAACGGAATCGGAAGCGGAAACGGCAGACATGGTAAC
GGAGGAAACGGACACATGGGGGGCGACACGGCGGCCAAACGGAGGGGCCG
CAATACGTCGGTAACAGCGATCAAGCGCCTATTACCGACGGCAAACGAAC
AGGCCAATGAGCAGTCGCGGTGGGACGCCACGGCCGCTTTCCGCTTCCCT
CTTCCGGAGGAGGCGTCCCCTTACGTTCTCGCGTACGGAGATGGGGCGTA
CGAGCTCGTGATGGGCGGGTACGGCGACGGGGGGGTGGCGGGGAGAGTGG
GGATGGGGAAGGGGAGCCAGGGGCCGCCTCAGTGCGTCCGCATCGCCGTG
TGGCGCAAGCAATTCCTCGCAGACCAGCGCCTTGGGGAGGTTGAGGTGCC
TCTCAGCAAGCTGATCTATCGCGGAGGCGTGGACGAGTGGGTGGGCCTTC
GGGGAGACAAGGGGTCTGCATGGTTCGTCAACGTCCGGTTCAGCTTGCGG
TTCGTGATGGTGAGCGTGTCCGATCCTCTTCCCGACGATGGTATCGATGA
CGAGGAAGGGGTTGCTCCGGACAGCCCAGGAATAACGCTCTCCAACGCCC
TAGCCGACGTCGACATGATGTGAGTTCGTCAACGTCCGGTTCAGCTTGCG
GTTCGTGATGGTGAGCGTGTCCGATCCTCTTCCCGACGATGGTATCGATG
ACGAGGAAGGGGTTGCTCCGGACAGCCCAGGAATAACGCTCTCCAACGCC
CTAGCCGACGTCGACATGATGTGA
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