mRNA_M-pyrifera_M_contig13599.6012.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13599.6012.1
Unique NamemRNA_M-pyrifera_M_contig13599.6012.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13599.6012.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 8.100e-84
Identity = 258/541 (47.69%), Postives = 301/541 (55.64%), Query Frame = 1 
Query:   10 HRKRLGQVRRLADATAKRLVVAAVADRAMASVHRFVEFALKT--------------QRWDIDARIHRTRLQRLDKFRTEILSEPYNPAAASDTHALALVSPPLLLDLSPEREGRASRVVKRREKAATEAVRGARLALQDLEEWKESVLAERQVVSAFLRGVDLIGALSAGAACDSDEHGEG------------DGATSLQADVVIADQYFLSRERHCGRDYESARIVHRLARSMSGAGI----PSPDSSAATSTSPSDSEGSSEGGRRNSGD--------RGRGNRDRAGPVGFLRALAALNPCVGALREARVAGRSGERLSTALETLREHVKATLIDLMDLETSIPEGGEATNGEDGGNDIGNGEXXXXXXXXXXXXXXXXXXATDAGALDVKIAGLLRRLSGGRGGDGGAEAAGGGADVEGGDGG-------------EAGCPLSLATVYGDGLGGLAMTSEMEVDTAESLTAMALQMVTKAAAGPLLRALDDAYQRIVRADLELRQLLPEAEALIGGAGSAKELALEARTRLVKSRQQ 1479
            HR+RLG VRRLADA+AKR+ V AVAD A ASVHRFV+FALK               QRWD+DAR HRTRL+RLDKFR++ILS+P     A D +        LLLDLSPERE RA+RVVK R KAA EA +  +LAL+DLE+W+  + AER  V  FLRG D   AL  GA+CD+ + GEG             G    + DVVIAD  FL+ E   GR    +    R   S +G G     PS  +  A   + ++ +GS  G               R R  +   GP   LRALAAL+PCV ALREAR A ++G+RL  ALETLREHVK                G A              XXXXXXXXXXX       A DA +LD K+AGL+ RLSGG           G AD                      G P SLA+VY DGL G A  SE EVD  ESLTA AL MV  AAAGPLL ALDDAYQ    A LELR+LLP+AEAL+GGAGSA E+A EAR+RLV  RQQ
Sbjct:  454 HRERLGHVRRLADASAKRVAVEAVADGATASVHRFVDFALKVPMLVVGTQRETWTVQRWDLDARNHRTRLRRLDKFRSDILSDPPKQPTAVDGNN---GGNSLLLDLSPERESRAARVVKGRTKAAAEATKEGKLALRDLEDWRGRISAERAAVEHFLRGADPTLALVPGASCDAAD-GEGLGGWDPGGLYRPGGRAGCEVDVVIADPGFLAGEAD-GRAANDSGGRSRRHASWTGTGAEVIAPSRSTVGAAGAAFAEGDGSRRGXXXXXXXXXXXXXXHRSRAQQPAVGP---LRALAALDPCVSALREARSAAKTGDRLGMALETLREHVK----------------GRAGGRGGXXXXXXXXXXXXXXXXXXXXGPAVELSAADASSLDAKVAGLVSRLSGG-----------GDADXXXXXXXXXXXXXXXXXXXXSRGSP-SLASVYKDGLRGAAAASEAEVDATESLTARALGMVITAAAGPLLWALDDAYQA---AHLELRRLLPDAEALLGGAGSAGEVAREARSRLVSVRQQ 955
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13599.6012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYH1_9PHAE8.100e-8447.69Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13599contigM-pyrifera_M_contig13599:5949..8521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1482
Cds size1482
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13599.6012.1prot_M-pyrifera_M_contig13599.6012.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13599 5949..8521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815821.2811167-CDS-M-pyrifera_M_contig13599:5948..60801622815821.2811167-CDS-M-pyrifera_M_contig13599:5948..6080Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13599 5949..6080 +
1692277588.2659948-CDS-M-pyrifera_M_contig13599:5948..60801692277588.2659948-CDS-M-pyrifera_M_contig13599:5948..6080Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13599 5949..6080 +
1622815821.2948046-CDS-M-pyrifera_M_contig13599:6476..65811622815821.2948046-CDS-M-pyrifera_M_contig13599:6476..6581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13599 6477..6581 +
1692277588.2749465-CDS-M-pyrifera_M_contig13599:6476..65811692277588.2749465-CDS-M-pyrifera_M_contig13599:6476..6581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13599 6477..6581 +
1622815821.3084722-CDS-M-pyrifera_M_contig13599:6692..78051622815821.3084722-CDS-M-pyrifera_M_contig13599:6692..7805Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13599 6693..7805 +
1692277588.2826142-CDS-M-pyrifera_M_contig13599:6692..78051692277588.2826142-CDS-M-pyrifera_M_contig13599:6692..7805Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13599 6693..7805 +
1622815821.3218374-CDS-M-pyrifera_M_contig13599:8389..85211622815821.3218374-CDS-M-pyrifera_M_contig13599:8389..8521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13599 8390..8521 +
1692277588.290985-CDS-M-pyrifera_M_contig13599:8389..85211692277588.290985-CDS-M-pyrifera_M_contig13599:8389..8521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13599 8390..8521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13599.6012.1

>prot_M-pyrifera_M_contig13599.6012.1 ID=prot_M-pyrifera_M_contig13599.6012.1|Name=mRNA_M-pyrifera_M_contig13599.6012.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=494bp
LQEHRKRLGQVRRLADATAKRLVVAAVADRAMASVHRFVEFALKTQRWDI
DARIHRTRLQRLDKFRTEILSEPYNPAAASDTHALALVSPPLLLDLSPER
EGRASRVVKRREKAATEAVRGARLALQDLEEWKESVLAERQVVSAFLRGV
DLIGALSAGAACDSDEHGEGDGATSLQADVVIADQYFLSRERHCGRDYES
ARIVHRLARSMSGAGIPSPDSSAATSTSPSDSEGSSEGGRRNSGDRGRGN
RDRAGPVGFLRALAALNPCVGALREARVAGRSGERLSTALETLREHVKAT
LIDLMDLETSIPEGGEATNGEDGGNDIGNGEGGGGGNGSARAEPTLTLTA
TDAGALDVKIAGLLRRLSGGRGGDGGAEAAGGGADVEGGDGGEAGCPLSL
ATVYGDGLGGLAMTSEMEVDTAESLTAMALQMVTKAAAGPLLRALDDAYQ
RIVRADLELRQLLPEAEALIGGAGSAKELALEARTRLVKSRQQV
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mRNA from alignment at M-pyrifera_M_contig13599:5949..8521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13599.6012.1 ID=mRNA_M-pyrifera_M_contig13599.6012.1|Name=mRNA_M-pyrifera_M_contig13599.6012.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2573bp|location=Sequence derived from alignment at M-pyrifera_M_contig13599:5949..8521+ (Macrocystis pyrifera P11B4 male)
CTGCAGGAGCACCGGAAGCGGCTCGGTCAAGTGAGGAGGCTGGCCGACGC
CACCGCGAAGCGCCTGGTGGTGGCGGCAGTGGCGGATCGGGCGATGGCAT
CAGTGCACCGCTTCGTCGAGTTCGCGCTAAAGGTGATATTTTTTTTGTTT
TTGGGCCGAGCGAGTTGGCCGCCGCTTGTCGTAGTTGTATGCATCGTGCC
CGATTGTCGATGCACAAGGCAGGTGGAAGACGTCCCGGTAGGATACAGCT
GTTTTCAGGTGGGCGAGCCCGGCGCTCGCAGATGTCTTCGTAGTTGCAAA
GCAGAAGAATCACATCATTTCCGCTTTTTTTTTTCAGGGAAGGAAAATCG
GTCGGCGTTGCCGTCTTTCAATGAAGAAAAGGATTAAACTCCTGTTGAAA
GCTGCGCCCACTCTTTTTGGAGACAAACTGCTTGAAATTGATGCGGCTCG
CATATTTTGAAGAGAAAAAATGGTTGAGACCAACCTTTAATTCGTTCCCC
GTGCCCTCCCATATCACCAACCCACCAGACCCAACGATGGGACATCGACG
CGCGCATACACCGCACACGCCTTCAACGGTTGGACAAATTCCGTACAGAA
ATTTTGTCTGAGCCTTACAACCCAGCCGCCGCCGTCGCCACCGCAGCCAC
CGCTACCACCGTGAGCAGCACCGACACCAACACCAGTCAGCGCGCTGGCG
CAGGTCTCTGCGCTGGTGGCGGCAGCGGCAACGAGCCGGAGCAGTCGGAC
ACCCATGCGCTCGCGCTGGTGTCTCCCCCCCTGCTGCTCGACCTCTCCCC
CGAGCGTGAGGGTAGGGCTTCTCGGGTGGTCAAGCGGCGAGAAAAGGCTG
CAACGGAGGCGGTGAGGGGGGCGAGGCTCGCGCTCCAGGACCTCGAGGAA
TGGAAAGAGAGCGTGCTGGCCGAGAGGCAGGTGGTGTCCGCCTTCCTGCG
CGGGGTGGACCTGATTGGAGCGCTGAGCGCGGGAGCGGCTTGCGACAGCG
ACGAGCACGGGGAGGGAGATGGCGCGACCTCGCTCCAGGCGGACGTGGTC
ATCGCGGACCAGTATTTCCTCTCGAGAGAGAGGCATTGTGGTAGGGACTA
CGAAAGCGCGAGAATAGTCCACCGTCTTGCTCGGTCGATGTCCGGAGCGG
GGATCCCCTCGCCCGACTCTTCGGCGGCAACCTCGACTTCACCCTCGGAC
AGCGAGGGCTCCTCCGAAGGAGGGAGACGAAACAGTGGCGATCGCGGCCG
TGGTAACCGAGACCGAGCGGGGCCCGTTGGGTTCTTACGCGCGCTCGCTG
CGCTCAACCCGTGCGTTGGCGCGCTCAGGGAGGCGAGGGTGGCGGGTAGG
TCGGGGGAACGCTTGAGCACGGCTCTCGAAACGCTACGGGAGCACGTGAA
GGCCACCCTCATCGACCTCATGGACCTCGAGACGTCGATCCCCGAGGGCG
GAGAAGCTACGAACGGCGAGGACGGCGGGAACGATATCGGGAACGGAGAA
GGCGGCGGTGGCGGTAACGGTAGTGCGAGAGCAGAACCTACATTGACGCT
GACAGCGACCGACGCGGGTGCCCTGGACGTCAAAATTGCCGGACTGCTGC
GAAGGCTTTCCGGGGGGCGGGGCGGCGATGGCGGCGCCGAAGCGGCCGGT
GGTGGTGCTGATGTGGAAGGCGGAGACGGTGGTGAGGCTGGCTGTCCGCT
TTCGCTTGCCACCGTGTACGGCGATGGGCTGGGGGGGTTGGCGATGACGT
CTGAAATGGAGGTTGACACAGCGGAGAGTCTGACCGCGATGGCGTTACAG
ATGGTAACAAAGGCAGCCGCGGGGCCTCTTCTGAGGGCGCTGGATGACGC
ATATCAGGTTTGGCGAAACGAGAGAGGTGGGAGCGCGAAGGGCGGGGTGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGG
GGGGGGTGTGGGGGGGTGGCCAAGTTGCGCGGTGACCGCGGGCGAGTTGG
GCGTCCATCAAAGAATTTGGCGACGGCTTACCGTCGCCGAGGCTTGTCCG
TCGATGCGCCGCGCGGGTCGTGGTGGACGCGGTGGTGGTTCCGCGACGGG
TATTTCTGCCGTATCCACGCCTAATAGATCTGTTTCACGGCGGACGTGTA
TTCTCTCGAAAAAATCGCGTTCGGTAGTTTGTGCCCCCAACCCCTTTCTC
ATTCGGAGAAGGCTCGTCCCGGCAACGCCCCCTCTCGCGCGGTTCCCTTT
ATTGAAACGCGACATGTTTTTTTTTTGGTGGTGGGGTTTGCTCCAAGTAC
CGCTCGTTACCGTGTGCCAAGGTGCCAAGGGGCGTACAGTAGAGGCACCG
CGGGTCATTTCCAATGGTTCTTGACGCTTAAAAGGACCCAGCGAGTTCGT
CCCGCCCATGTCTATCCTGTATGCATCTCTCCACCCCCCAGCGTATTGTC
CGAGCGGATTTGGAGCTCCGCCAACTTCTTCCGGAGGCCGAGGCGCTCAT
CGGAGGGGCCGGTTCCGCGAAGGAGCTCGCGCTCGAGGCTCGAACTCGGC
TCGTGAAAAGTCGGCAGCAGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13599:5949..8521+

>mRNA_M-pyrifera_M_contig13599.6012.1 ID=mRNA_M-pyrifera_M_contig13599.6012.1|Name=mRNA_M-pyrifera_M_contig13599.6012.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2964bp|location=Sequence derived from alignment at M-pyrifera_M_contig13599:5949..8521+ (Macrocystis pyrifera P11B4 male)
CTGCAGGAGCACCGGAAGCGGCTCGGTCAAGTGAGGAGGCTGGCCGACGC
CACCGCGAAGCGCCTGGTGGTGGCGGCAGTGGCGGATCGGGCGATGGCAT
CAGTGCACCGCTTCGTCGAGTTCGCGCTAAAGCTGCAGGAGCACCGGAAG
CGGCTCGGTCAAGTGAGGAGGCTGGCCGACGCCACCGCGAAGCGCCTGGT
GGTGGCGGCAGTGGCGGATCGGGCGATGGCATCAGTGCACCGCTTCGTCG
AGTTCGCGCTAAAGACCCAACGATGGGACATCGACGCGCGCATACACCGC
ACACGCCTTCAACGGTTGGACAAATTCCGTACAGAAATTTTGTCTGAGCC
TTACAACCCAGCCGCCGCCACCCAACGATGGGACATCGACGCGCGCATAC
ACCGCACACGCCTTCAACGGTTGGACAAATTCCGTACAGAAATTTTGTCT
GAGCCTTACAACCCAGCCGCCGCCTCGGACACCCATGCGCTCGCGCTGGT
GTCTCCCCCCCTGCTGCTCGACCTCTCCCCCGAGCGTGAGGGTAGGGCTT
CTCGGGTGGTCAAGCGGCGAGAAAAGGCTGCAACGGAGGCGGTGAGGGGG
GCGAGGCTCGCGCTCCAGGACCTCGAGGAATGGAAAGAGAGCGTGCTGGC
CGAGAGGCAGGTGGTGTCCGCCTTCCTGCGCGGGGTGGACCTGATTGGAG
CGCTGAGCGCGGGAGCGGCTTGCGACAGCGACGAGCACGGGGAGGGAGAT
GGCGCGACCTCGCTCCAGGCGGACGTGGTCATCGCGGACCAGTATTTCCT
CTCGAGAGAGAGGCATTGTGGTAGGGACTACGAAAGCGCGAGAATAGTCC
ACCGTCTTGCTCGGTCGATGTCCGGAGCGGGGATCCCCTCGCCCGACTCT
TCGGCGGCAACCTCGACTTCACCCTCGGACAGCGAGGGCTCCTCCGAAGG
AGGGAGACGAAACAGTGGCGATCGCGGCCGTGGTAACCGAGACCGAGCGG
GGCCCGTTGGGTTCTTACGCGCGCTCGCTGCGCTCAACCCGTGCGTTGGC
GCGCTCAGGGAGGCGAGGGTGGCGGGTAGGTCGGGGGAACGCTTGAGCAC
GGCTCTCGAAACGCTACGGGAGCACGTGAAGGCCACCCTCATCGACCTCA
TGGACCTCGAGACGTCGATCCCCGAGGGCGGAGAAGCTACGAACGGCGAG
GACGGCGGGAACGATATCGGGAACGGAGAAGGCGGCGGTGGCGGTAACGG
TAGTGCGAGAGCAGAACCTACATTGACGCTGACAGCGACCGACGCGGGTG
CCCTGGACGTCAAAATTGCCGGACTGCTGCGAAGGCTTTCCGGGGGGCGG
GGCGGCGATGGCGGCGCCGAAGCGGCCGGTGGTGGTGCTGATGTGGAAGG
CGGAGACGGTGGTGAGGCTGGCTGTCCGCTTTCGCTTGCCACCGTGTACG
GCGATGGGCTGGGGGGGTTGGCGATGACGTCTGAAATGGAGGTTGACACA
GCGGAGAGTCTGACCGCGATGGCGTTACAGATGGTAACAAAGGCAGCCGC
GGGGCCTCTTCTGAGGGCGCTGGATGACGCATATCAGTCGGACACCCATG
CGCTCGCGCTGGTGTCTCCCCCCCTGCTGCTCGACCTCTCCCCCGAGCGT
GAGGGTAGGGCTTCTCGGGTGGTCAAGCGGCGAGAAAAGGCTGCAACGGA
GGCGGTGAGGGGGGCGAGGCTCGCGCTCCAGGACCTCGAGGAATGGAAAG
AGAGCGTGCTGGCCGAGAGGCAGGTGGTGTCCGCCTTCCTGCGCGGGGTG
GACCTGATTGGAGCGCTGAGCGCGGGAGCGGCTTGCGACAGCGACGAGCA
CGGGGAGGGAGATGGCGCGACCTCGCTCCAGGCGGACGTGGTCATCGCGG
ACCAGTATTTCCTCTCGAGAGAGAGGCATTGTGGTAGGGACTACGAAAGC
GCGAGAATAGTCCACCGTCTTGCTCGGTCGATGTCCGGAGCGGGGATCCC
CTCGCCCGACTCTTCGGCGGCAACCTCGACTTCACCCTCGGACAGCGAGG
GCTCCTCCGAAGGAGGGAGACGAAACAGTGGCGATCGCGGCCGTGGTAAC
CGAGACCGAGCGGGGCCCGTTGGGTTCTTACGCGCGCTCGCTGCGCTCAA
CCCGTGCGTTGGCGCGCTCAGGGAGGCGAGGGTGGCGGGTAGGTCGGGGG
AACGCTTGAGCACGGCTCTCGAAACGCTACGGGAGCACGTGAAGGCCACC
CTCATCGACCTCATGGACCTCGAGACGTCGATCCCCGAGGGCGGAGAAGC
TACGAACGGCGAGGACGGCGGGAACGATATCGGGAACGGAGAAGGCGGCG
GTGGCGGTAACGGTAGTGCGAGAGCAGAACCTACATTGACGCTGACAGCG
ACCGACGCGGGTGCCCTGGACGTCAAAATTGCCGGACTGCTGCGAAGGCT
TTCCGGGGGGCGGGGCGGCGATGGCGGCGCCGAAGCGGCCGGTGGTGGTG
CTGATGTGGAAGGCGGAGACGGTGGTGAGGCTGGCTGTCCGCTTTCGCTT
GCCACCGTGTACGGCGATGGGCTGGGGGGGTTGGCGATGACGTCTGAAAT
GGAGGTTGACACAGCGGAGAGTCTGACCGCGATGGCGTTACAGATGGTAA
CAAAGGCAGCCGCGGGGCCTCTTCTGAGGGCGCTGGATGACGCATATCAG
CGTATTGTCCGAGCGGATTTGGAGCTCCGCCAACTTCTTCCGGAGGCCGA
GGCGCTCATCGGAGGGGCCGGTTCCGCGAAGGAGCTCGCGCTCGAGGCTC
GAACTCGGCTCGTGAAAAGTCGGCAGCAGGTACGTATTGTCCGAGCGGAT
TTGGAGCTCCGCCAACTTCTTCCGGAGGCCGAGGCGCTCATCGGAGGGGC
CGGTTCCGCGAAGGAGCTCGCGCTCGAGGCTCGAACTCGGCTCGTGAAAA
GTCGGCAGCAGGTA
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