mRNA_M-pyrifera_M_contig13558.5998.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13558.5998.1
Unique NamemRNA_M-pyrifera_M_contig13558.5998.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13558.5998.1 vs. uniprot
Match: D8LC16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC16_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.430e-26
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHISNPK 156
            AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHI NPK
Sbjct:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIQNPK 56
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BLAST of mRNA_M-pyrifera_M_contig13558.5998.1 vs. uniprot
Match: A0A6H5JHQ4_9PHAE (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.330e-25
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHISNPK 156
            AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHI NPK
Sbjct:  173 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHIQNPK 222
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BLAST of mRNA_M-pyrifera_M_contig13558.5998.1 vs. uniprot
Match: A0A835Z290_9STRA (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z290_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.430e-15
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 QAVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHISNPK 156
            QAVE  Q+ +  + +DG  W ELAYCYLM+N+LQNSYT+YQHALYHI NPK
Sbjct:   40 QAVELYQRVIEANPEDGAAWAELAYCYLMLNELQNSYTSYQHALYHIKNPK 90
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BLAST of mRNA_M-pyrifera_M_contig13558.5998.1 vs. uniprot
Match: A0A7S0MR61_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MR61_9CRYP)

HSP 1 Score: 71.2 bits (173), Expect = 3.930e-13
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHISNPK 156
            A EYLQ+AV  D  +G TW  LAY YL+ +DLQN+YTAYQHAL+H+ NPK
Sbjct:   87 AAEYLQRAVKADPNNGETWATLAYTYLLSDDLQNAYTAYQHALFHLPNPK 136
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BLAST of mRNA_M-pyrifera_M_contig13558.5998.1 vs. uniprot
Match: A0A2K1QNM7_9PEZI (Proteinral transcriptional corepressor ssn6 n=3 Tax=Elsinoaceae TaxID=40995 RepID=A0A2K1QNM7_9PEZI)

HSP 1 Score: 68.6 bits (166), Expect = 3.510e-12
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHISNPK 156
            AVEYLQ+ +  D  +G TW  L +CYLM++DLQ +Y+AYQ ALYH+ NPK
Sbjct:  100 AVEYLQRILRIDPSNGETWSSLGHCYLMMDDLQKAYSAYQQALYHLPNPK 149
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BLAST of mRNA_M-pyrifera_M_contig13558.5998.1 vs. uniprot
Match: UPI000644F0E8 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F0E8)

HSP 1 Score: 68.2 bits (165), Expect = 4.810e-12
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHISNPK 156
            A E+ Q+ +  D+K+G  W +L  CYLM++DLQ +Y+AYQHALYH+ NPK
Sbjct:   72 AAEFFQRIITIDEKNGEAWGDLGNCYLMLDDLQKAYSAYQHALYHLPNPK 121
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BLAST of mRNA_M-pyrifera_M_contig13558.5998.1 vs. uniprot
Match: UPI000644BA6A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BA6A)

HSP 1 Score: 68.2 bits (165), Expect = 4.810e-12
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHISNPK 156
            A +Y Q+ V  D+K+G  W  L +CYLM++DL  +YTAYQHALYH+ NPK
Sbjct:   89 ASDYFQRVVTIDNKNGEAWGHLGHCYLMMDDLHKAYTAYQHALYHLPNPK 138
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BLAST of mRNA_M-pyrifera_M_contig13558.5998.1 vs. uniprot
Match: A0A6A6GH76_9PEZI (Uncharacterized protein n=2 Tax=Elsinoe TaxID=40996 RepID=A0A6A6GH76_9PEZI)

HSP 1 Score: 67.8 bits (164), Expect = 6.560e-12
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    7 AVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHISNPK 156
            AVEYLQ  +  D  +G TW  L +CYLM++DLQ +Y+AYQ ALYH+ NPK
Sbjct:  103 AVEYLQSILRIDHTNGETWSSLGHCYLMMDDLQKAYSAYQQALYHLPNPK 152
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BLAST of mRNA_M-pyrifera_M_contig13558.5998.1 vs. uniprot
Match: A0A1X0RZT9_RHIZD (TPR-like protein n=2 Tax=Rhizopus TaxID=4842 RepID=A0A1X0RZT9_RHIZD)

HSP 1 Score: 67.0 bits (162), Expect = 1.210e-11
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 GQAVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHISNPK 156
            G+AVEY ++ +A  + +G TW  L +CYLM+++LQ +Y AYQ ALYH+SNPK
Sbjct:   72 GRAVEYFKRILAIQENNGETWAALGHCYLMMDNLQEAYQAYQQALYHLSNPK 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig13558.5998.1 vs. uniprot
Match: A0A367KN87_RHIST (Glucose repression mediator protein n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KN87_RHIST)

HSP 1 Score: 67.0 bits (162), Expect = 1.220e-11
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 GQAVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHISNPK 156
            G+AVEY ++ +A  + +G TW  L +CYLM+++LQ +Y AYQ ALYH+SNPK
Sbjct:   72 GRAVEYFKRILAIQENNGETWAALGHCYLMMDNLQEAYQAYQQALYHLSNPK 123
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13558.5998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC16_ECTSI1.430e-2698.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHQ4_9PHAE1.330e-2598.00Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A835Z290_9STRA2.430e-1566.67Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A7S0MR61_9CRYP3.930e-1364.00Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A2K1QNM7_9PEZI3.510e-1258.00Proteinral transcriptional corepressor ssn6 n=3 Ta... [more]
UPI000644F0E84.810e-1254.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
UPI000644BA6A4.810e-1256.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6A6GH76_9PEZI6.560e-1258.00Uncharacterized protein n=2 Tax=Elsinoe TaxID=4099... [more]
A0A1X0RZT9_RHIZD1.210e-1153.85TPR-like protein n=2 Tax=Rhizopus TaxID=4842 RepID... [more]
A0A367KN87_RHIST1.220e-1153.85Glucose repression mediator protein n=1 Tax=Rhizop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13558contigM-pyrifera_M_contig13558:1204..1362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue4.5e-21
Seed eggNOG ortholog2880.D8LC16
KEGG koko:K06665
KEGG Pathwayko04011,ko04111,map04011,map04111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006323,GO:0006325,GO:0006333,GO:0006342,GO:0006355,GO:0006357,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016584,GO:0017053,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0034728,GO:0040029,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0080090,GO:0090568,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.3688738-CDS-M-pyrifera_M_contig13558:1203..13621622815820.3688738-CDS-M-pyrifera_M_contig13558:1203..1362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13558 1204..1362 -
1692277587.7614706-CDS-M-pyrifera_M_contig13558:1203..13621692277587.7614706-CDS-M-pyrifera_M_contig13558:1203..1362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13558 1204..1362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13558.5998.1prot_M-pyrifera_M_contig13558.5998.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13558 1204..1362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13558.5998.1

>prot_M-pyrifera_M_contig13558.5998.1 ID=prot_M-pyrifera_M_contig13558.5998.1|Name=mRNA_M-pyrifera_M_contig13558.5998.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
GQAVEYLQQAVAFDDKDGHTWEELAYCYLMINDLQNSYTAYQHALYHISN
PKV
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mRNA from alignment at M-pyrifera_M_contig13558:1204..1362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13558.5998.1 ID=mRNA_M-pyrifera_M_contig13558.5998.1|Name=mRNA_M-pyrifera_M_contig13558.5998.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig13558:1204..1362- (Macrocystis pyrifera P11B4 male)
GGCCAGGCGGTGGAGTACCTCCAGCAAGCGGTAGCTTTCGACGACAAGGA
CGGGCACACGTGGGAAGAGTTGGCCTACTGCTATCTCATGATCAACGACC
TGCAGAACTCCTACACGGCGTACCAACACGCCCTGTACCACATATCGAAC
CCGAAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13558:1204..1362-

>mRNA_M-pyrifera_M_contig13558.5998.1 ID=mRNA_M-pyrifera_M_contig13558.5998.1|Name=mRNA_M-pyrifera_M_contig13558.5998.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig13558:1204..1362- (Macrocystis pyrifera P11B4 male)
GGCCAGGCGGTGGAGTACCTCCAGCAAGCGGTAGCTTTCGACGACAAGGA
CGGGCACACGTGGGAAGAGTTGGCCTACTGCTATCTCATGATCAACGACC
TGCAGAACTCCTACACGGCGTACCAACACGCCCTGTACCACATATCGAAC
CCGAAGGTGGGCCAGGCGGTGGAGTACCTCCAGCAAGCGGTAGCTTTCGA
CGACAAGGACGGGCACACGTGGGAAGAGTTGGCCTACTGCTATCTCATGA
TCAACGACCTGCAGAACTCCTACACGGCGTACCAACACGCCCTGTACCAC
ATATCGAACCCGAAGGTG
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