mRNA_M-pyrifera_M_contig13543.5989.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13543.5989.1
Unique NamemRNA_M-pyrifera_M_contig13543.5989.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13543.5989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13543contigM-pyrifera_M_contig13543:1540..1982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815819.7099543-CDS-M-pyrifera_M_contig13543:1539..19801622815819.7099543-CDS-M-pyrifera_M_contig13543:1539..1980Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13543 1540..1980 +
1692277587.3399153-CDS-M-pyrifera_M_contig13543:1539..19801692277587.3399153-CDS-M-pyrifera_M_contig13543:1539..1980Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13543 1540..1980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13543.5989.1prot_M-pyrifera_M_contig13543.5989.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13543 1540..1980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13543.5989.1

>prot_M-pyrifera_M_contig13543.5989.1 ID=prot_M-pyrifera_M_contig13543.5989.1|Name=mRNA_M-pyrifera_M_contig13543.5989.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
REWVWGDALRGKRGRLTGLQGSHNALRFRQLLSFSRVLLVQKSSPYSCRR
TAEPGSMFSKAREASRLALGDAEKQHTMYVDKPEDYSVVSLLSTPPRRNI
GETSNSVTRSAELRGTGNRCDCMYVAAEGTGGAAQEGHATPHEHHET
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mRNA from alignment at M-pyrifera_M_contig13543:1540..1982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13543.5989.1 ID=mRNA_M-pyrifera_M_contig13543.5989.1|Name=mRNA_M-pyrifera_M_contig13543.5989.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=443bp|location=Sequence derived from alignment at M-pyrifera_M_contig13543:1540..1982+ (Macrocystis pyrifera P11B4 male)
CGCGAGTGGGTGTGGGGGGATGCCTTGAGAGGCAAGAGAGGGCGCTTGAC
GGGCCTTCAGGGAAGCCACAACGCGCTCCGCTTCCGCCAATTGCTCTCGT
TCTCGCGCGTTTTGCTCGTCCAGAAGTCGAGCCCGTATTCGTGCCGCAGG
ACTGCCGAGCCCGGTTCGATGTTCAGCAAGGCGCGAGAGGCCTCCAGATT
AGCGTTGGGGGACGCGGAAAAACAACACACCATGTACGTAGATAAGCCAG
AGGACTATTCGGTTGTTTCCCTGCTGTCAACTCCACCTCGCCGAAATATT
GGCGAAACTTCGAACTCGGTTACTCGGAGTGCAGAGCTGCGTGGGACTGG
GAATCGCTGCGACTGCATGTATGTCGCAGCAGAGGGGACAGGGGGCGCCG
CTCAAGAAGGACACGCAACGCCACATGAACACCACGAAACACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13543:1540..1982+

>mRNA_M-pyrifera_M_contig13543.5989.1 ID=mRNA_M-pyrifera_M_contig13543.5989.1|Name=mRNA_M-pyrifera_M_contig13543.5989.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig13543:1540..1982+ (Macrocystis pyrifera P11B4 male)
CGCGAGTGGGTGTGGGGGGATGCCTTGAGAGGCAAGAGAGGGCGCTTGAC
GGGCCTTCAGGGAAGCCACAACGCGCTCCGCTTCCGCCAATTGCTCTCGT
TCTCGCGCGTTTTGCTCGTCCAGAAGTCGAGCCCGTATTCGTGCCGCAGG
ACTGCCGAGCCCGGTTCGATGTTCAGCAAGGCGCGAGAGGCCTCCAGATT
AGCGTTGGGGGACGCGGAAAAACAACACACCATGTACGTAGATAAGCCAG
AGGACTATTCGGTTGTTTCCCTGCTGTCAACTCCACCTCGCCGAAATATT
GGCGAAACTTCGAACTCGGTTACTCGGAGTGCAGAGCTGCGTGGGACTGG
GAATCGCTGCGACTGCATGTATGTCGCAGCAGAGGGGACAGGGGGCGCCG
CTCAAGAAGGACACGCAACGCCACATGAACACCACGAAACACGCGAGTGG
GTGTGGGGGGATGCCTTGAGAGGCAAGAGAGGGCGCTTGACGGGCCTTCA
GGGAAGCCACAACGCGCTCCGCTTCCGCCAATTGCTCTCGTTCTCGCGCG
TTTTGCTCGTCCAGAAGTCGAGCCCGTATTCGTGCCGCAGGACTGCCGAG
CCCGGTTCGATGTTCAGCAAGGCGCGAGAGGCCTCCAGATTAGCGTTGGG
GGACGCGGAAAAACAACACACCATGTACGTAGATAAGCCAGAGGACTATT
CGGTTGTTTCCCTGCTGTCAACTCCACCTCGCCGAAATATTGGCGAAACT
TCGAACTCGGTTACTCGGAGTGCAGAGCTGCGTGGGACTGGGAATCGCTG
CGACTGCATGTATGTCGCAGCAGAGGGGACAGGGGGCGCCGCTCAAGAAG
GACACGCAACGCCACATGAACACCACGAAACA
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