|
|
Homology
BLAST of mRNA_M-pyrifera_M_contig13510.5980.1 vs. uniprot
Match: D8LKY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY2_ECTSI) HSP 1 Score: 147 bits (370), Expect = 9.310e-39 Identity = 84/184 (45.65%), Postives = 120/184 (65.22%), Query Frame = 1
Query: 1 ELAVMDAKMDRKVKATVKATKTLAQEMHRKR------NIGSATAAAAGEEVSMEHFLKLMSASVSADMEGADEEVVQSKRYKNLMKLVTTIQGEDDDDDMIIDRGNKVSLICPLTSAMFKEPVQSKACKHTFEKQAILNHINIARNNRAPAACPVAGCIRKVKKEDLVVDEAMLRLLRIESQTE 534
+LA +AK++ K AT A KTLA E+ +K EE+ M +FL+ M++ +S+ MEGADE+ ++SK YK+LMK++ DDDDD+I+ N+VSL CPLTS+ F +PV++K C HT+ K+AILNHI +A+N+ +CPVAGC KV K DLV D+ M+R L+IE T+
Sbjct: 203 QLAAQNAKLEIKRAATASAMKTLAAEVDKKTAXXXXXXXXXXXXXXXXEEMDMAYFLESMTSKLSSAMEGADEKALESKEYKDLMKMIVAT-AMDDDDDIIVPNDNRVSLKCPLTSSTFVDPVKNKVCGHTYGKKAILNHIRVAKNDGG-VSCPVAGCSNKVVKADLVPDKDMMRRLKIEENTQ 384
BLAST of mRNA_M-pyrifera_M_contig13510.5980.1 vs. uniprot
Match: A0A8C6YBW2_NAJNA (E3 SUMO-protein ligase NSE2 n=2 Tax=Naja naja TaxID=35670 RepID=A0A8C6YBW2_NAJNA) HSP 1 Score: 83.6 bits (205), Expect = 8.790e-16 Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 1
Query: 139 MEHFLKLMSASVSADMEGADEEVVQSKRYKNLMKLVTTIQGEDDDDDMI--IDRGNKVSL-----ICPLTSAMFKEPVQSKACKHTFEKQAILNHINIARNNRAPAACPVAGCIRKVKKEDLVVDEAMLRLL 513
ME F L S + +AD+E +E+VV K M+ IQ + ++ ++ +D +SL ICP+T K+PV+SK C HT+E++AIL HI + ++ CP GC R+V+K DLV DE + R++
Sbjct: 144 MERFRNLESKNCNADLE-RNEKVVLFKEQIKQMEAQVGIQPDPEEGPVLEQVDEDLTMSLSQRKFICPITQEEMKKPVKSKICGHTYEEEAILEHIRRRQQHKKKVNCPQVGCSREVRKADLVFDEVLKRMI 274
BLAST of mRNA_M-pyrifera_M_contig13510.5980.1 vs. uniprot
Match: A0A2D4PFF5_MICSU (E3 SUMO-protein ligase NSE2 (Fragment) n=3 Tax=Micrurus TaxID=8634 RepID=A0A2D4PFF5_MICSU) HSP 1 Score: 80.1 bits (196), Expect = 1.060e-14 Identity = 50/143 (34.97%), Postives = 79/143 (55.24%), Query Frame = 1
Query: 139 MEHFLKLMSASVSADMEGADEEVVQSKRYKNLMKLVTTIQGEDD--------DDDMIIDRGNKVSLICPLTSAMFKEPVQSKACKHTFEKQAILNHINIARNNRAPAACPVAGCI-RKVKKEDLVVDEAMLRLLRIESQTEQT 540
ME F L S + +AD++ +E+VV K MK IQ + + D+D+ + + + ICP+T K+PV++K C H++E++AIL HI + ++ CP GC RKV+K DLV DE + R + I S+ Q+
Sbjct: 103 MERFRNLESKNCNADLQ-RNEKVVLFKEQIKHMKAQIGIQPDAEEESTLEQVDEDLAVTQSQR-KFICPITQEEMKKPVRNKVCGHSYEEEAILEHIRRRQQHKKKVTCPQVGCSNRKVRKADLVFDEVLKRTIDIWSKQTQS 243
BLAST of mRNA_M-pyrifera_M_contig13510.5980.1 vs. uniprot
Match: UPI00192F1D11 (E3 SUMO-protein ligase NSE2 n=1 Tax=Crotalus tigris TaxID=88082 RepID=UPI00192F1D11) HSP 1 Score: 79.3 bits (194), Expect = 1.870e-14 Identity = 51/142 (35.92%), Postives = 76/142 (53.52%), Query Frame = 1
Query: 139 MEHFLKLMSASVSADMEGADEEVVQSKRYKNLMKLVTTIQGEDD--------DDDMIIDRGNKVSLICPLTSAMFKEPVQSKACKHTFEKQAILNHINIARNNRAPAACPVAGCI-RKVKKEDLVVDEAMLRLLRIESQTEQ 537
ME F L S + AD++ +E+VV K MK IQ E + D+D+ + + + ICP+T K+PV++K C HT+E++AIL HI + + CP GC R+VKK DLV DE + R + I ++ Q
Sbjct: 97 MERFRNLESKNCDADLQ-RNEKVVVFKEQLKQMKAQFGIQPEAEGGPALEQVDEDLAVTQSQR-KFICPITQEEMKKPVRNKICGHTYEEEAILEHIRRRQQRKKKVNCPQVGCNNREVKKADLVFDEVLKRTIDIWNKQNQ 236
BLAST of mRNA_M-pyrifera_M_contig13510.5980.1 vs. uniprot
Match: A0A6I9Z239_9SAUR (E3 SUMO-protein ligase NSE2 n=3 Tax=Colubridae TaxID=8578 RepID=A0A6I9Z239_9SAUR) HSP 1 Score: 77.8 bits (190), Expect = 6.960e-14 Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 1
Query: 139 MEHFLKLMSASVSADMEGADEEVVQSKRYKNLMKLVTTIQGEDD--------DDDMIIDRGNKVSLICPLTSAMFKEPVQSKACKHTFEKQAILNHINIARNNRAPAACPVAGCIRK-VKKEDLVVDEAMLRLLRIESQTEQT 540
ME F L S + SAD++ +E+VV K MK IQ + + D+D+ + + + ICP+T K+PV++K C HT+E++AIL HI + ++ CP GC K V+K DLV DE + R + + ++ Q+
Sbjct: 97 MEKFRNLESKNCSADLQ-RNEKVVLFKEQIKQMKAQFGIQPDAEEGPALEQLDEDLAVTQSQR-KFICPITQEEMKKPVRNKICGHTYEEEAILEHIRRRQQHKKKVNCPQVGCNNKEVRKADLVFDEVLKRTIDVWNKRSQS 237
BLAST of mRNA_M-pyrifera_M_contig13510.5980.1 vs. uniprot
Match: A0A6J1UWZ6_9SAUR (E3 SUMO-protein ligase NSE2 n=2 Tax=Acanthophiinae TaxID=42167 RepID=A0A6J1UWZ6_9SAUR) HSP 1 Score: 77.8 bits (190), Expect = 6.960e-14 Identity = 50/142 (35.21%), Postives = 78/142 (54.93%), Query Frame = 1
Query: 139 MEHFLKLMSASVSADMEGADEEVVQSKRYKNLMKLVTTIQGEDD--------DDDMIIDRGNKVSLICPLTSAMFKEPVQSKACKHTFEKQAILNHINIARNNRAPAACPVAGCI-RKVKKEDLVVDEAMLRLLRIESQTEQ 537
ME F L S + +AD++ +E+VV K MK IQ + + D+D+ + + + ICP+T K+PV++K C HT+E++AIL HI + ++ CP GC R+V+K DLV DE + R + I S+ Q
Sbjct: 97 MERFRNLESKNCNADLQ-RNEKVVLFKDQIKQMKAQVGIQPDAEEGPALEQVDEDIAVTQSQR-KFICPITQEEMKKPVRNKICGHTYEEEAILEHIRRRQQHKKKVNCPQVGCNNREVRKADLVFDEVLKRTIDIWSKGSQ 236
BLAST of mRNA_M-pyrifera_M_contig13510.5980.1 vs. uniprot
Match: A0A6A7BZI2_9PEZI (SP-RING-type domain-containing protein n=1 Tax=Piedraia hortae CBS 480.64 TaxID=1314780 RepID=A0A6A7BZI2_9PEZI) HSP 1 Score: 75.5 bits (184), Expect = 1.810e-12 Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 1
Query: 265 DDDDDMIIDRGNKVSLICPLTSAMFKEPVQSKACKHTFEKQAILNHINIARN-NRAPAA--CPVAGCIRKVKKEDLVVDEAMLRLL-RIESQTEQTGPPADAEEAYDAVGETYI 594
DDDDD+ + G +S CPLT F EP+ SK C H+FEK AIL+ I A P + CPV GC R + K+DL D ++R + R++S E+ D E D G+ +
Sbjct: 265 DDDDDLAV-AGQTISTKCPLTLQEFNEPLTSKKCNHSFEKNAILDMIRTAPQWGPGPRSIKCPVGGCNRDLTKDDLHPDAILIRKIKRLQSAREREEDEGDEESEKDGSGDEML 377
BLAST of mRNA_M-pyrifera_M_contig13510.5980.1 vs. uniprot
Match: A0A420YL90_9PEZI (SP-RING-type domain-containing protein n=1 Tax=Coniochaeta pulveracea TaxID=177199 RepID=A0A420YL90_9PEZI) HSP 1 Score: 74.3 bits (181), Expect = 5.220e-12 Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 1
Query: 259 GEDDDDDMIIDRGNKVSLICPLTSAMFKEPVQSKACKHTFEKQAILNHINI----ARNNRAPAACPVAGCIRKVKKEDLVVDEAMLRLLRIESQTEQTGPPADAEEAYDAVGETYI 594
G+DD++++ I G K+ CPL+ EP SK CKH+F+K AIL I + A+ NR CPV GC +++KKEDL D+ +LR RIE Q + A + G T +
Sbjct: 287 GDDDEEELQI-TGGKLDTRCPLSMTELTEPYTSKRCKHSFQKDAILEFIRLWRPGAQGNRC--MCPVVGCDKEIKKEDLYHDKILLR--RIERQRAADQEDEGSSGAEEEEGTTMV 397
BLAST of mRNA_M-pyrifera_M_contig13510.5980.1 vs. uniprot
Match: A0A6A6Y726_9PEZI (uncharacterized protein n=1 Tax=Mytilinidion resinicola TaxID=574789 RepID=A0A6A6Y726_9PEZI) HSP 1 Score: 73.6 bits (179), Expect = 1.010e-11 Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 1
Query: 259 GEDDDDDMIIDRGNKVSLICPLTSAMFKEPVQSKACKHTFEKQAILNHINIAR----NNRAPAACPVAGCIRKVKKEDLVVDEAMLRLL-RIESQTEQTGPPADAEEAYD 573
GEDDDDD++I + + +S CPLT FK+PV S+ C H+FEK+AI+ IN + + CPV+GC + + DL V+ +LR++ R+ +Q D +A D
Sbjct: 280 GEDDDDDVMIAK-DTISTKCPLTLREFKDPVSSRKCPHSFEKEAIMGMINGSGARLGTGQKVVQCPVSGCDKMLCAADLKVNPVLLRVIERLRKAKDQASDDEDDVDATD 388
BLAST of mRNA_M-pyrifera_M_contig13510.5980.1 vs. uniprot
Match: A0A2N3NG17_9PEZI (SP-RING-type domain-containing protein n=1 Tax=Lomentospora prolificans TaxID=41688 RepID=A0A2N3NG17_9PEZI) HSP 1 Score: 70.1 bits (170), Expect = 1.540e-10 Identity = 38/84 (45.24%), Postives = 47/84 (55.95%), Query Frame = 1
Query: 265 DDDDDMIIDRGNKVSLICPLTSAMFKEPVQSKACKHTFEKQAILNHINIARNNRAPAACPVAGCIRKVKKEDLVVDEAMLRLLR 516
DDD+D++I+R KVS CPL+ K+P + CKHTFEK AI+ AR CP AGC K DL D AML +R
Sbjct: 280 DDDEDIVIER-EKVSTRCPLSLQEMKDPYTNSRCKHTFEKDAIMEFFGSARQ----VMCPQAGCSMTFTKRDLYPDRAMLARIR 358
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 147.1 |
| Seed ortholog evalue | 8.4e-33 |
| Seed eggNOG ortholog | 2880.D8LKY2 |
| Preferred name | NSMCE2 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004857,GO:0004860,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006469,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007063,GO:0007088,GO:0007275,GO:0007346,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010015,GO:0010073,GO:0010075,GO:0010082,GO:0010556,GO:0010558,GO:0010563,GO:0010564,GO:0010605,GO:0010638,GO:0010646,GO:0010647,GO:0010948,GO:0010965,GO:0012505,GO:0016043,GO:0016604,GO:0016605,GO:0016740,GO:0016925,GO:0018193,GO:0018205,GO:0019207,GO:0019210,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019789,GO:0019887,GO:0022402,GO:0022622,GO:0023051,GO:0023056,GO:0030071,GO:0030234,GO:0030291,GO:0030915,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031331,GO:0031399,GO:0031400,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032268,GO:0032269,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032875,GO:0032876,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0033673,GO:0034091,GO:0034093,GO:0034182,GO:0034184,GO:0034641,GO:0036211,GO:0040008,GO:0042127,GO:0042325,GO:0042326,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045859,GO:0045862,GO:0045876,GO:0045931,GO:0045934,GO:0045936,GO:0046483,GO:0048364,GO:0048507,GO:0048509,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048638,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051276,GO:0051338,GO:0051348,GO:0051640,GO:0051641,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060249,GO:0060250,GO:0060255,GO:0061659,GO:0061665,GO:0062033,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0080036,GO:0080038,GO:0080090,GO:0090068,GO:0090304,GO:0090329,GO:0090398,GO:0097240,GO:0098687,GO:0098772,GO:0099402,GO:0106068,GO:0140096,GO:1901360,GO:1901564,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905392,GO:1905818,GO:1905820,GO:1990234,GO:1990683,GO:2000026,GO:2000104,GO:2000112,GO:2000113,GO:2000280,GO:2001252 |
| EggNOG free text desc. | SUMO transferase activity |
| EggNOG OGs | KOG2979@1,KOG2979@2759 |
| Ec32 ortholog description | Zinc finger, RING/FYVE/PHD-type |
| Ec32 ortholog | Ec-11_006000.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 6 |
| Model size | 635 |
| Cds size | 585 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815818.757105-UTR-M-pyrifera_M_contig13510:3168..3206 | 1622815818.757105-UTR-M-pyrifera_M_contig13510:3168..3206 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig13510 3169..3206 - |
| 1692277586.6546085-UTR-M-pyrifera_M_contig13510:3168..3206 | 1692277586.6546085-UTR-M-pyrifera_M_contig13510:3168..3206 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig13510 3169..3206 - |
| 1622815818.8536012-UTR-M-pyrifera_M_contig13510:7042..7054 | 1622815818.8536012-UTR-M-pyrifera_M_contig13510:7042..7054 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig13510 7043..7054 - |
| 1692277586.7357528-UTR-M-pyrifera_M_contig13510:7042..7054 | 1692277586.7357528-UTR-M-pyrifera_M_contig13510:7042..7054 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig13510 7043..7054 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815818.7713268-CDS-M-pyrifera_M_contig13510:3206..3293 | 1622815818.7713268-CDS-M-pyrifera_M_contig13510:3206..3293 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig13510 3207..3293 - |
| 1692277586.6679978-CDS-M-pyrifera_M_contig13510:3206..3293 | 1692277586.6679978-CDS-M-pyrifera_M_contig13510:3206..3293 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig13510 3207..3293 - |
| 1622815818.7825294-CDS-M-pyrifera_M_contig13510:4500..4650 | 1622815818.7825294-CDS-M-pyrifera_M_contig13510:4500..4650 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig13510 4501..4650 - |
| 1692277586.6770127-CDS-M-pyrifera_M_contig13510:4500..4650 | 1692277586.6770127-CDS-M-pyrifera_M_contig13510:4500..4650 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig13510 4501..4650 - |
| 1622815818.7974186-CDS-M-pyrifera_M_contig13510:5307..5418 | 1622815818.7974186-CDS-M-pyrifera_M_contig13510:5307..5418 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig13510 5308..5418 - |
| 1692277586.6862185-CDS-M-pyrifera_M_contig13510:5307..5418 | 1692277586.6862185-CDS-M-pyrifera_M_contig13510:5307..5418 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig13510 5308..5418 - |
| 1622815818.8108907-CDS-M-pyrifera_M_contig13510:5712..5829 | 1622815818.8108907-CDS-M-pyrifera_M_contig13510:5712..5829 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig13510 5713..5829 - |
| 1692277586.6956224-CDS-M-pyrifera_M_contig13510:5712..5829 | 1692277586.6956224-CDS-M-pyrifera_M_contig13510:5712..5829 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig13510 5713..5829 - |
| 1622815818.8227904-CDS-M-pyrifera_M_contig13510:6239..6335 | 1622815818.8227904-CDS-M-pyrifera_M_contig13510:6239..6335 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig13510 6240..6335 - |
| 1692277586.704407-CDS-M-pyrifera_M_contig13510:6239..6335 | 1692277586.704407-CDS-M-pyrifera_M_contig13510:6239..6335 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig13510 6240..6335 - |
| 1622815818.8351152-CDS-M-pyrifera_M_contig13510:7018..7042 | 1622815818.8351152-CDS-M-pyrifera_M_contig13510:7018..7042 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig13510 7019..7042 - |
| 1692277586.7250252-CDS-M-pyrifera_M_contig13510:7018..7042 | 1692277586.7250252-CDS-M-pyrifera_M_contig13510:7018..7042 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig13510 7019..7042 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig13510.5980.1 >prot_M-pyrifera_M_contig13510.5980.1 ID=prot_M-pyrifera_M_contig13510.5980.1|Name=mRNA_M-pyrifera_M_contig13510.5980.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
MDAKMDRKVKATVKATKTLAQEMHRKRNIGSATAAAAGEEVSMEHFLKLM
SASVSADMEGADEEVVQSKRYKNLMKLVTTIQGEDDDDDMIIDRGNKVSL
ICPLTSAMFKEPVQSKACKHTFEKQAILNHINIARNNRAPAACPVAGCIR
KVKKEDLVVDEAMLRLLRIESQTEQTGPPADAEEAYDAVGETYI* back to topmRNA from alignment at M-pyrifera_M_contig13510:3169..7054- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig13510.5980.1 ID=mRNA_M-pyrifera_M_contig13510.5980.1|Name=mRNA_M-pyrifera_M_contig13510.5980.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3886bp|location=Sequence derived from alignment at M-pyrifera_M_contig13510:3169..7054- (Macrocystis pyrifera P11B4 male)
GAACTGGCTGTCATGGACGCCAAGATGGATAGGAAGGTATTGGTTTTGTT
TGCTGAACACAATAACTCCACCTCTTAATACTATTGGTAGCACTGTTGAT
GGTGCGTACACTTACACTCGTGAAGGGGTGTCACGCGAGTATAAGACTCC
AGCTCTATTGTTTATAGATACGTACTCGTTTAGACTTCGTATTTGGCAGG
GATTGCACATTTCGGGGAAAACTGCAACGTTCGGTAACCGGTACTCACCT
GGGCTCTCTTTCTCAACACGTAGGACCCAATCCCGACTCGCTTGGCGTGC
CCTCTCGGCTGTAGTAGAGGCCTTTCATACCGGTAGCATTACGTTGCCCC
ATGTAGCAACTCTAGCAGGTCTTTCTGCCGCAATGCCCGTATCTTTGTTA
CAACGACCTCACTCCGAAACAATGGTTGAGCGAAGGTTGTGCTTCCGGAA
GCCCGCGCACATGTCTGTACTGCTGTCAAGTCCGTTGTTTTGCCCGTCGA
GGTGCATCACACCCAGTGTTCGTCCTGCCTGTTCATCCTAAAGGAATCCA
GGCTTTGCTTTCACAAATCCCGATACGAAGATGATACATCGCAGGCCAAT
CATTCTGTATACGATTTAAAAACGTACTCGTAATGTGCGGACAGCAGTTC
CCACACGTTTTGCGTTCCAGCGCGTCGCGCTGGTGTTGGTTTAAACGTTC
AGACAACCATTGAAACCAGGTGAAAGCGACGGTGAAGGCGACGAAGACTC
TCGCCCAAGAGATGCACAGAAAGCGGAACATCGGATCAGCAACAGCCGCA
GCCGCGGGAGAAGAGGTGCGGCTATTTATTACTGCAGTACAAATAATAGC
ACTCCATGGGTACACGAGTATGTTGGAGCGTGTGGTGGTTTCAACTTTAG
TGCTGTACGAGTAGACCTCGGGGGCTCGGGGCATACTACTGTTTTTTGAC
CGGCCGGGACGCGATGGTTGGCATTAATCCCCTCTGTTACGAGTCCTCTC
GAGCACAACACCATAAGTCCCAGCACTGCGGGCTATCGATGCCTTTGCCT
TCTCAACAAAGTACTCTGCGATGGTCCGTGGACGGCATCCAGGAACTCGT
AAAACCAAAGCAACCACAAGGTTCGTTGGCGAAAGTGACGTTTCCTAAAG
GAGTACCAACATCCTCGACGGTGCCATGTCGTTCGTCCTCCTTTCTAATG
GTCATGGCCTACGCCGATTTTGCAGGTAAGTATGGAACACTTTTTGAAGC
TGATGTCTGCCAGCGTGTCAGCGGATATGGAAGGGGCAGACGAGGAGGTG
GTCCAGTCCAAGAGGTACAAGAACCTGATGAAGCTCGTCACGGTGAGGAG
TCAACTCTACGAGTACCAAAAGGCGTTATGCTTGTCCAGACAGCTGCATC
GGCGGCACCGCGTCGAGTTTGCAATGCACAATGCCCACCAACCATGCCCT
CGTCCGCGCGTGCGGCGGAGTTCTTCTGCAGTCCCTTGCACGGTGTCTGC
TGTTCATGTCTCGTACCCTTCCTATACGAGCTTGAGTAGGCGACACCAAG
ATATACCGTGCCATACGATGCCACGCCACGACACGACATAACGTACGCGC
GCAAATATTTTCCCGGGCTGCCGATCTTGCCGACAGACCATACAAGGTGA
AGACGACGATGACGACATGATCATCGATCGTGGCAATAAAGTCAGCCTCA
TTTGCCCGCTCACATCGGCCATGTTCAAGGAGCCCGTACAGAGCAAGGTG
AGGAGCGTTTTGCCTTCCGGGAGTGCTGCGAAGCGCCTCGGACAACACAT
CATTCTGCCACGGCAGCGTTATGGGGTGTCGCTTTGCGCCGGGCGAAGCT
TGCCGACGTACTTTTAACCGCCGGTGTACCCTACGAGGCCTTCGTTTCTA
GCTAGCCTTGGTGCCATCGGCGACCGATCCGTTTCAGCACTGTGTTCAGT
AGTTTTACGAATGTGTCATCTGTGAGTGTTTGTGGCGTTCCTACCTGTGT
GTTCTCGAGGCTTTGGTTTTCCAAGAGAAATGCCTCCTTTGAAAACGCCT
CGACGAGGTTTGGGATTGCGCGCTTCGCCATCTCGGGCAAATAGACGGGG
CTCTAAATAATCACGTGCTTGAGTTGTTTCAGCGCTTATCTCTCACACAT
GTCCGCCGGCGCAGCTCACGTGCGCCATGAGCAGCACCGCTTTGCCGCGC
CATCGTGCTTTTGTTTTTCGCGGTGTATTTATTCCAGCATTTTATTTGCT
GACGTGTCATTGCGATGCATTGTGATGCTTGACTCCATCTCCATCATGGC
GGACAGTCTGAGCTGTCGGTTGCTGTTCTTGAGCCAGTGCAGGCTTTCCT
CGCCCAACCCGAACGTTCCGCGTATCCCTTGCAACGCCGTGCAATCCACG
CCAGGCGTGTAAACACACGTTTGAGAAACAAGCCATCCTCAACCACATCA
ACATCGCCAGAAATAATAGGGCACCAGCGGCATGTCCGGTTGCCGGCTGC
ATCCGCAAAGTAAAAAAGGAAGACCTGGTGGTCGACGAAGCCATGCTGCG
CCTGGTGAGTGCCTACGACGATATGTTTATACGCCTTGTGGTAATACTGT
GGTTCAGTGTGAAGGTGTAGGTACGTAAATATTGCGTTTAATCAGCGGAT
GGTGAAATATCGTCATGCAGCGCCACGTTTGTTTTAGCCCGATGGCGTGC
ATCTCGACATAACTTGTGTTGATGGCCCCTATGGGCACTCCTTATTGCCG
TCTTGAAGGGCATGCCGTTGGAGTGAACCCCGGGGGCACGGACTGTCTCC
TCCCCTTTGGCATATCAATGGCAATGGCAGTCAAACAGCAGCAAGGGTTG
AGCCGGGCGACCAAGTGTTTTGGCTGGTACCTGGTATAGTTTGTTTTCCA
ACGCGTCGAGAGCTGTAAGCACCCTTCCCCAATGTTCTTTGAATGTGAAG
CGAGATCGGGAGCAAGAATCAAGGCTTGCTCTCTTCGCCGTAACTATAGT
ATTGCCCTTGCTTGGTAGCGTAGTTACAGTAGTGGCAATTCCGTGAGTCT
CGACGCATCTTTTGCGCGCACTCGTAGCGCACGTTTAACCGAAATCCCCC
GGAATAATCAGATAAGTATCGAAGGCACTCGATTTTTGTTTCGTCGATTA
AGAACTTACCAGGTTGAACTTTGTTTTACGTTGGGGTGAACCGGTGCATC
GTTCGGATTACATTTTTCGAAACCACTCGCCAACAGCATGCCTGAAAAAC
TTGTCGATGATGGTTTTTGAGGTGATGACATTTATGTTCGAATGAGAAAG
GATCAAGCCTCTTTTAATAGTAGCTGCCGACGTACGAGGTGCTTATTTTG
TAGGGACGGGCATGCACTGTGCCTACCCGAAGAGTCGCTTGCTGCCGACG
CTGTGTGCATAAGTATTCGTTGTAGTCATGATATGGCATTGTGATCACGA
CCAGGTGTTGCTTGCAGTCGTGATCAGGAGGTGTAGGTGCGAATCACGTT
TTCTTTTCAAATGCGCCTGTTTTATCAAGGGTGGCTCTTCATTTCGGCTT
GCGGGTTCAACACTCTCGTTTTCGTTCGGGTCAAGCCGTACTTGATGCTC
TACGCAAAACCTAGCTCGTTCTCCACGCTACTAAAGCCAGCAAGGGATAC
GATTTCGCCACCCTTGCTCTCTAACACCGCCACCCTCGTACTCCATGCCC
CCTCTACACACGCCGCTCCGTCGCGAACATGATACCCCGGTCGTGCCACT
GCCGGCCGCAGTTGCGGATCGAGAGCCAGACGGAACAGACGGGCCCGCCT
GCTGACGCGGAGGAAGCCTACGACGCTGTCGGGGAAACTTATATCTGATG
GACTGGCTGCCGTTTCGTTCAAATGTTGTTATCGCG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig13510:3169..7054- >mRNA_M-pyrifera_M_contig13510.5980.1 ID=mRNA_M-pyrifera_M_contig13510.5980.1|Name=mRNA_M-pyrifera_M_contig13510.5980.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig13510:3169..7054- (Macrocystis pyrifera P11B4 male)
ATGGACGCCAAGATGGATAGGAAGATGGACGCCAAGATGGATAGGAAGGT
GAAAGCGACGGTGAAGGCGACGAAGACTCTCGCCCAAGAGATGCACAGAA
AGCGGAACATCGGATCAGCAACAGCCGCAGCCGCGGGAGAAGAGGTGAAA
GCGACGGTGAAGGCGACGAAGACTCTCGCCCAAGAGATGCACAGAAAGCG
GAACATCGGATCAGCAACAGCCGCAGCCGCGGGAGAAGAGGTAAGTATGG
AACACTTTTTGAAGCTGATGTCTGCCAGCGTGTCAGCGGATATGGAAGGG
GCAGACGAGGAGGTGGTCCAGTCCAAGAGGTACAAGAACCTGATGAAGCT
CGTCACGGTAAGTATGGAACACTTTTTGAAGCTGATGTCTGCCAGCGTGT
CAGCGGATATGGAAGGGGCAGACGAGGAGGTGGTCCAGTCCAAGAGGTAC
AAGAACCTGATGAAGCTCGTCACGACCATACAAGGTGAAGACGACGATGA
CGACATGATCATCGATCGTGGCAATAAAGTCAGCCTCATTTGCCCGCTCA
CATCGGCCATGTTCAAGGAGCCCGTACAGAGCAAGACCATACAAGGTGAA
GACGACGATGACGACATGATCATCGATCGTGGCAATAAAGTCAGCCTCAT
TTGCCCGCTCACATCGGCCATGTTCAAGGAGCCCGTACAGAGCAAGGCGT
GTAAACACACGTTTGAGAAACAAGCCATCCTCAACCACATCAACATCGCC
AGAAATAATAGGGCACCAGCGGCATGTCCGGTTGCCGGCTGCATCCGCAA
AGTAAAAAAGGAAGACCTGGTGGTCGACGAAGCCATGCTGCGCCTGGCGT
GTAAACACACGTTTGAGAAACAAGCCATCCTCAACCACATCAACATCGCC
AGAAATAATAGGGCACCAGCGGCATGTCCGGTTGCCGGCTGCATCCGCAA
AGTAAAAAAGGAAGACCTGGTGGTCGACGAAGCCATGCTGCGCCTGTTGC
GGATCGAGAGCCAGACGGAACAGACGGGCCCGCCTGCTGACGCGGAGGAA
GCCTACGACGCTGTCGGGGAAACTTATATCTGATTGCGGATCGAGAGCCA
GACGGAACAGACGGGCCCGCCTGCTGACGCGGAGGAAGCCTACGACGCTG
TCGGGGAAACTTATATCTGA back to top
|