mRNA_M-pyrifera_M_contig13494.5972.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13494.5972.1
Unique NamemRNA_M-pyrifera_M_contig13494.5972.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13494.5972.1 vs. uniprot
Match: A0A6H5JNY5_9PHAE (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY5_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.840e-41
Identity = 69/83 (83.13%), Postives = 79/83 (95.18%), Query Frame = 1 
Query:    1 QVKVLFFASCREMAGTKETSLQLPGASSTTSKLRECIVEKLPGLKPVAATVTLALNQEYLDPEKDTPLKDGDEIAFIPPISGG 249
            +VKVLFFASCREMAGTKETSL+LPG SS+ ++LRE IV+KLPGL+PVAATVTLALNQEYLDPE+D PLK+GDE+AFIPPISGG
Sbjct:    2 KVKVLFFASCREMAGTKETSLELPGDSSSIAQLREHIVKKLPGLQPVAATVTLALNQEYLDPEQDAPLKEGDEVAFIPPISGG 84
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BLAST of mRNA_M-pyrifera_M_contig13494.5972.1 vs. uniprot
Match: D8LMR2_ECTSI (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR2_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 3.550e-41
Identity = 70/83 (84.34%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 QVKVLFFASCREMAGTKETSLQLPGASSTTSKLRECIVEKLPGLKPVAATVTLALNQEYLDPEKDTPLKDGDEIAFIPPISGG 249
            QVKVLFFASCREMAGTKETSL+LPG SS+ ++LRE IVEKLPGL+PVAATVTLALNQEYLDPE+D  LK+GDE+AFIPPISGG
Sbjct:   24 QVKVLFFASCREMAGTKETSLELPGDSSSIAQLREHIVEKLPGLQPVAATVTLALNQEYLDPEQDATLKEGDEVAFIPPISGG 106
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BLAST of mRNA_M-pyrifera_M_contig13494.5972.1 vs. uniprot
Match: A0A835YXW6_9STRA (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 6.610e-28
Identity = 52/83 (62.65%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:    1 QVKVLFFASCREMAGTKETSLQLPGASSTTSKLRECIVEKLPGLKPVAATVTLALNQEYLDPEKDTPLKDGDEIAFIPPISGG 249
            +VKVLFFASCRE+AGTKE ++ L GA ++T  LR+ +VE LP L+PVA  +TLA+N EY DP ++  LKDGDE+A IPPISGG
Sbjct:    2 KVKVLFFASCRELAGTKEIAVTLEGAENSTEALRKKLVELLPALEPVAWGITLAVNHEYTDPGQNVQLKDGDEVALIPPISGG 84
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BLAST of mRNA_M-pyrifera_M_contig13494.5972.1 vs. uniprot
Match: A0A5J4XEY5_9CHLO (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XEY5_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 3.700e-18
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:    4 VKVLFFASCREMAGTKETSLQLPGASSTTSKLRECIVEKLPGLKPVAATVTLALNQEYLDPEKDTPLKDGDEIAFIPPISGG 249
            V VLFFA  RE+AG  + +++L  A+ T  +L + ++ K P L  + A+  L+LNQEYLD +K  PLKDGDE+A IPP+SGG
Sbjct:    6 VTVLFFARGRELAGVSQIAVKLQDAADT-KQLLKYVLSKYPKLSEIVASTVLSLNQEYLDVDKSVPLKDGDEVAVIPPVSGG 86
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BLAST of mRNA_M-pyrifera_M_contig13494.5972.1 vs. uniprot
Match: A0A2P6TZ70_CHLSO (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TZ70_CHLSO)

HSP 1 Score: 80.9 bits (198), Expect = 6.870e-18
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    4 VKVLFFASCREMAGTKETSLQLPGASSTTSKLRECIVEKLPGLKPVAATVTLALNQEYLDPEKDTPLKDGDEIAFIPPISGG 249
            V+VLFFA  RE+AGT E S+ L   S+TT  L++ +++K P L+ +  +   +LNQEYL P ++ PLK GDE+A IPPISGG
Sbjct:    3 VRVLFFARSRELAGTSEASVTLEPGSTTTVLLQQ-LLQKYPQLQELQGSFVFSLNQEYLAPGEEQPLKGGDEVAVIPPISGG 83
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BLAST of mRNA_M-pyrifera_M_contig13494.5972.1 vs. uniprot
Match: L8H968_ACACA (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H968_ACACA)

HSP 1 Score: 80.5 bits (197), Expect = 9.740e-18
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    1 QVKVLFFASCREMAGTKETSLQLPGASSTTSKLRECIVEKLPGLKPVAATVTLALNQEYLDPEKDTPLKDGDEIAFIPPISGG 249
            +VK LFFA+ R++ G +E  L     + T + +   ++E+ PGL P+  +  LA+NQEY+DPE    LKDGDEIA IPPISGG
Sbjct:    2 RVKCLFFAASRDVTGVQEKELTYADGTKTDALIAN-LIEQFPGLGPIFQSAVLAVNQEYIDPESPIELKDGDEIAVIPPISGG 83
[Close]
BLAST of mRNA_M-pyrifera_M_contig13494.5972.1 vs. uniprot
Match: A0A150H0I6_GONPE (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H0I6_GONPE)

HSP 1 Score: 80.1 bits (196), Expect = 1.380e-17
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 QVKVLFFASCREMAGTKETSLQLPGASSTTSKLRECIVEKLPGLKPVAATVTLALNQEYLDPEKDTPLKDGDEIAFIPPISGG 249
            Q+KVL+FA  RE+AG  E +  LP  + T   L+  I+   P L+ V  T   ALNQEYL PE    LKDGDE+A IPP+SGG
Sbjct:    2 QIKVLYFAKSREVAGIAEQAFNLPDGADTADLLQH-IISSHPALESVMKTCVFALNQEYLRPEDKEALKDGDEVAVIPPLSGG 83
[Close]
BLAST of mRNA_M-pyrifera_M_contig13494.5972.1 vs. uniprot
Match: I0Z8E1_COCSC (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z8E1_COCSC)

HSP 1 Score: 80.1 bits (196), Expect = 1.380e-17
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 QVKVLFFASCREMAGTKETSLQLPGASSTTSKLRECIVEKLPGLKPVAATVTLALNQEYLDPEKDTPLKDGDEIAFIPPISGG 249
            ++  LFFA  RE+AGT    ++L   +ST   L + +++K PGL  +     LALNQEY+D +   PLKDGDE+A IPPISGG
Sbjct:    2 KISFLFFARSRELAGTDTYDVELADGASTQDAL-QAVLKKFPGLSEIEGRCVLALNQEYVDSDSVKPLKDGDEVALIPPISGG 83
[Close]
BLAST of mRNA_M-pyrifera_M_contig13494.5972.1 vs. uniprot
Match: A0A2P6VR71_9CHLO (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VR71_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 1.120e-16
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:    4 VKVLFFASCREMAGTKETSLQLPGASSTTSKLRECIVEKLPGLKPVAATVTLALNQEYLDPEKDTPLKDGDEIAFIPPISGG 249
            V+VLFFA  RE+AGT E +L L  A STT+ L   ++E+ P L  +  +  L+LNQEYL P ++  LK GDE+A IPPISGG
Sbjct:    3 VRVLFFARSRELAGTSEATLALE-AGSTTAALLPRLMEQYPWLAELGGSFVLSLNQEYLAPGEEQVLKAGDEVAVIPPISGG 83
[Close]
BLAST of mRNA_M-pyrifera_M_contig13494.5972.1 vs. uniprot
Match: G5A3S1_PHYSP (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A3S1_PHYSP)

HSP 1 Score: 76.6 bits (187), Expect = 3.560e-16
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 QVKVLFFASCREMAGTKETSLQLP----GASSTTSKLRECIVEKLPGLKPVAATVTLALNQEYLDPEKDTPLKDGDEIAFIPPISGG 249
            +VKVL+FAS RE  G +E  LQLP      S+T + LR  +V+K P       ++TLA N EY   E D+PL DGDE+A IPPISGG
Sbjct:    3 EVKVLYFASAREEIGLREEKLQLPVDGDKNSATLASLRRVLVDKYPHAAATIESITLARNLEYS--EDDSPLDDGDEVALIPPISGG 87
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13494.5972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNY5_9PHAE1.840e-4183.13Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
D8LMR2_ECTSI3.550e-4184.34Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A835YXW6_9STRA6.610e-2862.65Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A5J4XEY5_9CHLO3.700e-1850.00Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A2P6TZ70_CHLSO6.870e-1851.22Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
L8H968_ACACA9.740e-1848.19Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A150H0I6_GONPE1.380e-1750.60Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
I0Z8E1_COCSC1.380e-1748.19Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A2P6VR71_9CHLO1.120e-1652.44Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
G5A3S1_PHYSP3.560e-1650.57Molybdopterin synthase sulfur carrier subunit n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13494contigM-pyrifera_M_contig13494:2275..2601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue6.9e-25
Seed eggNOG ortholog2880.D8LMR2
Preferred nameMOCS2
KEGG rclassRC02507
KEGG koko:K03635,ko:K21232
KEGG ReactionR09395
KEGG Pathwayko00790,ko01100,ko04122,map00790,map01100,map04122
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009987,GO:0010033,GO:0018130,GO:0018315,GO:0019538,GO:0019637,GO:0019720,GO:0023052,GO:0032870,GO:0036211,GO:0042040,GO:0042221,GO:0043170,GO:0043412,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051716,GO:0065007,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Mo-molybdopterin cofactor metabolic process
EggNOG OGsKOG3474@1,KOG3474@2759
EC2.8.1.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size327
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13494.5972.1prot_M-pyrifera_M_contig13494.5972.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13494 2311..2526 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.2296596-UTR-M-pyrifera_M_contig13494:2274..23101622815818.2296596-UTR-M-pyrifera_M_contig13494:2274..2310Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13494 2275..2310 +
1692277586.3456032-UTR-M-pyrifera_M_contig13494:2274..23101692277586.3456032-UTR-M-pyrifera_M_contig13494:2274..2310Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13494 2275..2310 +
1622815818.2581716-UTR-M-pyrifera_M_contig13494:2526..26011622815818.2581716-UTR-M-pyrifera_M_contig13494:2526..2601Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13494 2527..2601 +
1692277586.364795-UTR-M-pyrifera_M_contig13494:2526..26011692277586.364795-UTR-M-pyrifera_M_contig13494:2526..2601Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13494 2527..2601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.2452517-CDS-M-pyrifera_M_contig13494:2310..25261622815818.2452517-CDS-M-pyrifera_M_contig13494:2310..2526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13494 2311..2526 +
1692277586.3563573-CDS-M-pyrifera_M_contig13494:2310..25261692277586.3563573-CDS-M-pyrifera_M_contig13494:2310..2526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13494 2311..2526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13494.5972.1

>prot_M-pyrifera_M_contig13494.5972.1 ID=prot_M-pyrifera_M_contig13494.5972.1|Name=mRNA_M-pyrifera_M_contig13494.5972.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
MAGTKETSLQLPGASSTTSKLRECIVEKLPGLKPVAATVTLALNQEYLDP
EKDTPLKDGDEIAFIPPISGG*
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mRNA from alignment at M-pyrifera_M_contig13494:2275..2601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13494.5972.1 ID=mRNA_M-pyrifera_M_contig13494.5972.1|Name=mRNA_M-pyrifera_M_contig13494.5972.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig13494:2275..2601+ (Macrocystis pyrifera P11B4 male)
CAGGTCAAGGTTCTTTTCTTCGCGTCGTGCCGAGAGATGGCGGGCACCAA
AGAAACGTCCCTCCAGCTGCCGGGCGCCAGCTCCACCACCTCCAAGCTTC
GGGAGTGCATCGTGGAGAAGCTGCCAGGCCTCAAGCCAGTGGCGGCTACG
GTCACCCTCGCGTTGAATCAGGAGTATCTCGACCCCGAGAAAGACACGCC
TCTAAAAGACGGGGACGAGATCGCTTTCATTCCGCCGATTAGTGGAGGGT
GAATTTTTCCGCCTTTTGGTTTTATTCTTGCAGTCGTGTGTCGGTCTGTG
TTTCTGATATGGGATGGGAGAGGGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13494:2275..2601+

>mRNA_M-pyrifera_M_contig13494.5972.1 ID=mRNA_M-pyrifera_M_contig13494.5972.1|Name=mRNA_M-pyrifera_M_contig13494.5972.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig13494:2275..2601+ (Macrocystis pyrifera P11B4 male)
ATGGCGGGCACCAAAGAAACGTCCCTCCAGCTGCCGGGCGCCAGCTCCAC
CACCTCCAAGCTTCGGGAGTGCATCGTGGAGAAGCTGCCAGGCCTCAAGC
CAGTGGCGGCTACGGTCACCCTCGCGTTGAATCAGGAGTATCTCGACCCC
GAGAAAGACACGCCTCTAAAAGACGGGGACGAGATCGCTTTCATTCCGCC
GATTAGTGGAGGGTGAATGGCGGGCACCAAAGAAACGTCCCTCCAGCTGC
CGGGCGCCAGCTCCACCACCTCCAAGCTTCGGGAGTGCATCGTGGAGAAG
CTGCCAGGCCTCAAGCCAGTGGCGGCTACGGTCACCCTCGCGTTGAATCA
GGAGTATCTCGACCCCGAGAAAGACACGCCTCTAAAAGACGGGGACGAGA
TCGCTTTCATTCCGCCGATTAGTGGAGGGTGA
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