mRNA_M-pyrifera_M_contig13463.5967.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13463.5967.1
Unique NamemRNA_M-pyrifera_M_contig13463.5967.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13463.5967.1 vs. uniprot
Match: A0A6H5KJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU0_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.250e-44
Identity = 76/84 (90.48%), Postives = 77/84 (91.67%), Query Frame = 1
Query:   10 AVPNRYLRLVDKFNEQNVSAFLTAGGAKLMLLHDGSTDDAIRTFFTEVHELY--LLMNPFYAYDSPVISPAFDQRVKALARKLL 255
            + P  YLRLVDKFNEQNVSAFLTAGGAKLMLLHDG TDDAIRTFF EVHELY  LLMNPFYAYDSPVISPAFDQRVKALARKLL
Sbjct:   57 STPATYLRLVDKFNEQNVSAFLTAGGAKLMLLHDGRTDDAIRTFFAEVHELYVKLLMNPFYAYDSPVISPAFDQRVKALARKLL 140          
BLAST of mRNA_M-pyrifera_M_contig13463.5967.1 vs. uniprot
Match: A0A835Z2S7_9STRA (Sedlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2S7_9STRA)

HSP 1 Score: 107 bits (266), Expect = 6.440e-28
Identity = 50/79 (63.29%), Postives = 66/79 (83.54%), Query Frame = 1
Query:   25 YLRLVDKFNEQNVSAFLTAGGAKLMLLHDGSTDDAIRTFFTEVHELYL--LMNPFYAYDSPVISPAFDQRVKALARKLL 255
            YLR+VDKFNEQ VSA+LTA G +LMLLHDG +++ I +FF +VHELY+  ++NPFY +D+P+ISP FD+RV+ALA K L
Sbjct:   61 YLRVVDKFNEQIVSAYLTAAGVRLMLLHDGRSEEGIGSFFKDVHELYVKHMLNPFYRFDTPIISPEFDERVRALAVKWL 139          
BLAST of mRNA_M-pyrifera_M_contig13463.5967.1 vs. uniprot
Match: A0A7S0FIJ0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIJ0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.300e-27
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 1
Query:   19 NRYLRLVDKFNEQNVSAFLTAGGAKLMLLHDGSTDDAIRTFFTEVHELY--LLMNPFYAYDSPVISPAFDQRVKALARKLL 255
            N YL++VDK N Q VS FLTAG  K MLLH G  +D+I+ FF++V+ELY  LL+NPFYAYD+P+ S AFD RV+A+AR+ L
Sbjct:   54 NMYLKVVDKVNHQQVSTFLTAGNVKFMLLHGGKNEDSIKNFFSDVYELYVKLLLNPFYAYDTPITSKAFDTRVRAIARRYL 134          
BLAST of mRNA_M-pyrifera_M_contig13463.5967.1 vs. uniprot
Match: A0A7S2US08_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US08_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.950e-27
Identity = 47/79 (59.49%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   19 NRYLRLVDKFNEQNVSAFLTAGGAKLMLLHDGSTDDAIRTFFTEVHELY--LLMNPFYAYDSPVISPAFDQRVKALARK 249
            N YL+ +DKFN+ ++S ++TA G + +LLHDG +DDAI+ FF++V+ELY  LLMNPFY YDS V+SPAFD RV+ LAR+
Sbjct:   57 NMYLKTIDKFNDMSISGWITAQGIRFLLLHDGRSDDAIKNFFSDVYELYVRLLMNPFYKYDSQVLSPAFDHRVRILARR 135          
BLAST of mRNA_M-pyrifera_M_contig13463.5967.1 vs. uniprot
Match: A0A0L0SS10_ALLM3 (Uncharacterized protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SS10_ALLM3)

HSP 1 Score: 101 bits (252), Expect = 7.050e-26
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   16 PNRYLRLVDKFNEQNVSAFLTAGGAKLMLLHDGSTDDAIRTFFTEVHELYL--LMNPFYAYDSPVISPAFDQRVKALARKLL 255
            PN YLR+VDKFN+  VSAF++AG  + MLLHD   +D IR FFT+VHELY+  LMNPFY  + P+ +PAFD +V+ +AR+ L
Sbjct:   51 PNMYLRVVDKFNDWFVSAFVSAGNIRFMLLHDSKNEDGIRNFFTDVHELYVKSLMNPFYEVNDPIDNPAFDLKVRTIARRYL 132          
BLAST of mRNA_M-pyrifera_M_contig13463.5967.1 vs. uniprot
Match: H3G6S7_PHYRM (Uncharacterized protein n=25 Tax=Peronosporaceae TaxID=4777 RepID=H3G6S7_PHYRM)

HSP 1 Score: 100 bits (248), Expect = 2.780e-25
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   16 PNRYLRLVDKFNEQNVSAFLTAGGAKLMLLHDGSTDDAIRTFFTEVHELY--LLMNPFYAYDSPVISPAFDQRVKALARKLL 255
            P   L++VD+FN+Q VSAF+TA G K +LLH+   DD ++ FF EVHELY  LLMNPFY YD+P+ S  FD RVK LAR+ L
Sbjct:   50 PAMALKVVDRFNDQLVSAFVTASGVKFLLLHETRNDDTVKAFFHEVHELYVKLLMNPFYEYDTPISSEVFDARVKTLARRYL 131          
BLAST of mRNA_M-pyrifera_M_contig13463.5967.1 vs. uniprot
Match: A0A7S2EF91_TRICV (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S2EF91_TRICV)

HSP 1 Score: 100 bits (248), Expect = 3.460e-25
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   19 NRYLRLVDKFNEQNVSAFLTAGGAKLMLLHDGSTDDAIRTFFTEVHELY--LLMNPFYAYDSPVISPAFDQRVKALARKLL 255
            N YL++VDK N Q VS FLTAG  K MLLH G ++D I+ FFT+V+ELY  L MNPFY YD+P+ S AFD R +++AR+ L
Sbjct:   58 NMYLKVVDKVNHQQVSTFLTAGNIKFMLLHSGKSEDGIKNFFTDVYELYVKLSMNPFYKYDTPITSKAFDIRARSIARRYL 138          
BLAST of mRNA_M-pyrifera_M_contig13463.5967.1 vs. uniprot
Match: A0A1E7EU74_9STRA (Putative spondyloepiphyseal dysplasia n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EU74_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.560e-25
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 1
Query:   19 NRYLRLVDKFNEQNVSAFLTAGGAKLMLLHDGSTDDAIRTFFTEVHELY--LLMNPFYAYDSPVISPAFDQRVKALARKLL 255
            N YL++VDK N+Q VS FLTAG  K +LLH G ++D I+ FF EVHELY  L MNPFY YD+P+ S  FD+RV+ +AR+L+
Sbjct:   60 NMYLKVVDKVNQQYVSTFLTAGNIKFLLLHSGKSEDTIKIFFQEVHELYVQLSMNPFYRYDTPITSKEFDKRVRNVARRLV 140          
BLAST of mRNA_M-pyrifera_M_contig13463.5967.1 vs. uniprot
Match: A0A151Z5J3_9MYCE (Trafficking protein particle complex subunit 2 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z5J3_9MYCE)

HSP 1 Score: 99.4 bits (246), Expect = 6.410e-25
Identity = 44/85 (51.76%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 HVPAVPNRYLRLVDKFNEQNVSAFLTAGGAKLMLLHDGSTDDAIRTFFTEVHELYL--LMNPFYAYDSPVISPAFDQRVKALARK 249
            HV    N YL+++DK+N+ N+S+++TAG  KLMLLH+   +D IR+FFTEVH++YL  L+NPFY +++P+ SP FD RV+ L  K
Sbjct:   49 HVWKSNNMYLKIIDKYNKYNISSYVTAGQIKLMLLHEKKDEDPIRSFFTEVHDIYLKYLLNPFYTFNTPITSPTFDARVRKLGAK 133          
BLAST of mRNA_M-pyrifera_M_contig13463.5967.1 vs. uniprot
Match: A0A7R9WLH9_9STRA (Trafficking protein particle complex subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WLH9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.040e-24
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   25 YLRLVDKFNEQNVSAFLTAGGAKLMLLHDGSTDDAIRTFFTEVHELYLL--MNPFYAYDSPVISPAFDQRVKALARKLL 255
            YLR+VDK N Q VSAF TAG  K MLLH G +DD IR FF EV+ELY+   MNPFY YD+P+ S  FD+RV+++AR+ L
Sbjct:   62 YLRVVDKVNHQQVSAFQTAGNIKFMLLHAGKSDDTIRNFFNEVYELYVKVSMNPFYHYDTPITSKEFDKRVRSVARRYL 140          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13463.5967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJU0_9PHAE1.250e-4490.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z2S7_9STRA6.440e-2863.29Sedlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S0FIJ0_9STRA3.300e-2760.49Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2US08_9STRA4.950e-2759.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0L0SS10_ALLM37.050e-2657.32Uncharacterized protein n=2 Tax=Allomyces macrogyn... [more]
H3G6S7_PHYRM2.780e-2558.54Uncharacterized protein n=25 Tax=Peronosporaceae T... [more]
A0A7S2EF91_TRICV3.460e-2558.02Hypothetical protein n=2 Tax=Eupodiscales TaxID=33... [more]
A0A1E7EU74_9STRA3.560e-2558.02Putative spondyloepiphyseal dysplasia n=1 Tax=Frag... [more]
A0A151Z5J3_9MYCE6.410e-2551.76Trafficking protein particle complex subunit 2 n=1... [more]
A0A7R9WLH9_9STRA1.040e-2460.76Trafficking protein particle complex subunit n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13463contigM-pyrifera_M_contig13463:3611..4521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score103.6
Seed ortholog evalue4.7e-20
Seed eggNOG ortholog28583.AMAG_00238T0
Preferred nameTRS20
KEGG koko:K20301
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005793,GO:0005794,GO:0005801,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016192,GO:0030008,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0099023,GO:1990070,GO:1990071,GO:1990072
EggNOG free text desc.Trafficking protein particle complex subunit 2
EggNOG OGs3A0GZ@33154,3P2JW@4751,COG5603@1,KOG3487@2759
Ec32 ortholog descriptionSedlin
Ec32 orthologEc-19_000860.1
COG Functional cat.U
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815817.9343488-CDS-M-pyrifera_M_contig13463:3610..37751622815817.9343488-CDS-M-pyrifera_M_contig13463:3610..3775Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13463 3611..3775 +
1692277586.1607943-CDS-M-pyrifera_M_contig13463:3610..37751692277586.1607943-CDS-M-pyrifera_M_contig13463:3610..3775Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13463 3611..3775 +
1622815817.9446423-CDS-M-pyrifera_M_contig13463:4428..45211622815817.9446423-CDS-M-pyrifera_M_contig13463:4428..4521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13463 4429..4521 +
1692277586.178211-CDS-M-pyrifera_M_contig13463:4428..45211692277586.178211-CDS-M-pyrifera_M_contig13463:4428..4521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13463 4429..4521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13463.5967.1prot_M-pyrifera_M_contig13463.5967.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13463 3611..4521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13463.5967.1

>prot_M-pyrifera_M_contig13463.5967.1 ID=prot_M-pyrifera_M_contig13463.5967.1|Name=mRNA_M-pyrifera_M_contig13463.5967.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
HVPAVPNRYLRLVDKFNEQNVSAFLTAGGAKLMLLHDGSTDDAIRTFFTE
VHELYLLMNPFYAYDSPVISPAFDQRVKALARKLL*
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mRNA from alignment at M-pyrifera_M_contig13463:3611..4521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13463.5967.1 ID=mRNA_M-pyrifera_M_contig13463.5967.1|Name=mRNA_M-pyrifera_M_contig13463.5967.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=911bp|location=Sequence derived from alignment at M-pyrifera_M_contig13463:3611..4521+ (Macrocystis pyrifera P11B4 male)
CACGTCCCGGCCGTCCCCAACAGATATCTACGGTTGGTGGACAAGTTCAA CGAGCAGAACGTTTCGGCGTTTCTGACGGCGGGCGGGGCCAAACTGATGC TACTCCACGACGGCAGCACGGATGATGCCATCCGAACTTTCTTCACCGAG GTCCACGAGCTCTACGTCAAGGCAAGAATAACATCCCAAGAACTCTCGTA TTGTAGTTATTACGGAGGGTCCATAGAAAGTAGGACCTAGGGTATACTTT AAAACCTATATATTAAAAAAAAAATACTAACAATATTTGGTCCTGTTTAC TATGGTCCCCCGTAATAGTGTATACGCCTTGTCCCAGCTTCGACCACCGA AAGGGTTGATGGTCCGCACTAACTCCTCATAGAGATACATGCTTAATTCG GAGAAAACTCCCGGAAAAATCCCAGGCGGTCCGTATTCGGGTTAATGTTT TAACGTACCTGCTATGGTATCAAACTGTAGTCGAGTACGATATGTTTCTT CACCGAGGTCAACGAGCTCTAGGTCGAGACTAAGAAGACGGCCGACGCAG TTATGCTACCACGCACTATTAATGGTATGCACAAGACGTGCAGAGGTTTT TCCTATTTTCACTTTAAAACCCATTTGGTGCTGTTTTCACACCAGGCATG CGTTGCAGTAGATTTGCACGGCCGTCCAGTCGCATCGCACTCCTGTCGCA TCCCACCCCATCCCGTCCCGTCGCCTCTCACCTCAACCTACCCTACCGCA CCCCACCCCGTCCCGCCCCGCCCCGTCCCGTCCCGCCCCATCCCATCGCG CCCCGCCCGGCCCCGCAGCTTCTTATGAATCCGTTTTACGCTTATGATTC CCCGGTGATATCTCCGGCGTTCGATCAACGCGTGAAAGCTCTGGCAAGAA AACTCTTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13463:3611..4521+

>mRNA_M-pyrifera_M_contig13463.5967.1 ID=mRNA_M-pyrifera_M_contig13463.5967.1|Name=mRNA_M-pyrifera_M_contig13463.5967.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig13463:3611..4521+ (Macrocystis pyrifera P11B4 male)
CACGTCCCGGCCGTCCCCAACAGATATCTACGGTTGGTGGACAAGTTCAA
CGAGCAGAACGTTTCGGCGTTTCTGACGGCGGGCGGGGCCAAACTGATGC
TACTCCACGACGGCAGCACGGATGATGCCATCCGAACTTTCTTCACCGAG
GTCCACGAGCTCTACCACGTCCCGGCCGTCCCCAACAGATATCTACGGTT
GGTGGACAAGTTCAACGAGCAGAACGTTTCGGCGTTTCTGACGGCGGGCG
GGGCCAAACTGATGCTACTCCACGACGGCAGCACGGATGATGCCATCCGA
ACTTTCTTCACCGAGGTCCACGAGCTCTACCTTCTTATGAATCCGTTTTA
CGCTTATGATTCCCCGGTGATATCTCCGGCGTTCGATCAACGCGTGAAAG
CTCTGGCAAGAAAACTCTTGTGACTTCTTATGAATCCGTTTTACGCTTAT
GATTCCCCGGTGATATCTCCGGCGTTCGATCAACGCGTGAAAGCTCTGGC
AAGAAAACTCTTGTGA
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