mRNA_M-pyrifera_M_contig13422.5956.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig13422.5956.1 vs. uniprot
Match: A0A6H5JT74_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT74_9PHAE) HSP 1 Score: 169 bits (428), Expect = 5.680e-49 Identity = 97/167 (58.08%), Postives = 112/167 (67.07%), Query Frame = 1
Query: 4 EVEDPCKVMISNLDYSLTEEDVKVFCSTAGPVTAVKLIKKRYAKTSKGFGFVDFEQPLMATIALEELNGKEFHGRIVELKPAITAREKRMQEATGDWEQRSLEKERRSAEGYADEDEGGEKGESRADSPLPSKDGTIH---TTEAFFDFVGR---RVKPKPQVSAEE 486
E E+PCKVMISNLDYSLTE DV FCSTAG V VKL+KK YAKTSKG+GFVDF+QPL ATIA+E LNGKE GR+VELKPAIT+REKR ++A DWEQR LE++RR +GY R + PLP K T + F + VGR R K AEE
Sbjct: 91 ESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRRKQALRDWEQRCLEEDRRVEQGYP-----------RREVPLPEKKKMADFGVTVDEFLEIVGRTNSRTAKKQPKYAEE 246
BLAST of mRNA_M-pyrifera_M_contig13422.5956.1 vs. uniprot
Match: W7TTT9_9STRA (Rnp-1 like rna-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTT9_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 7.220e-14 Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1
Query: 16 PCKVMISNLDYSLTEEDVKVFCSTAGPVTAVKLIKKRYAKTSKGFGFVDFEQPLMATIALEELNGKEFHGRIVELKPAI 252
P ++M+SNL + + E+++ F S AG V VK+I R SKG+GFV F +PL AT ALE L+G E GR ++++PAI
Sbjct: 65 PTQIMVSNLPFDTSTEELEAFASQAGQVVNVKIILDRETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAI 143
BLAST of mRNA_M-pyrifera_M_contig13422.5956.1 vs. uniprot
Match: I4AKB7_BERLS (RRM domain-containing RNA-binding protein n=3 Tax=Cytophagales TaxID=768507 RepID=I4AKB7_BERLS) HSP 1 Score: 67.4 bits (163), Expect = 2.530e-11 Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 31 ISNLDYSLTEEDVKVFCSTAGPVTAVKLIKKRYAKTSKGFGFVDFEQPLMATIALEELNGKEFHGRIVELKPAI 252
+SNL YS++EE+++ S G VT+ K+I R + S+GFGFV+ E A+EELNG E GR +++K AI
Sbjct: 5 VSNLPYSISEEELEAVFSELGVVTSTKIITDRETRRSRGFGFVEMESEEDGEAAIEELNGVELKGREIQVKKAI 78
BLAST of mRNA_M-pyrifera_M_contig13422.5956.1 vs. uniprot
Match: A0A7S2V4S3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4S3_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.770e-10 Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 19 CKVMISNLDYSLTEEDVKVFCSTAGPVTAVKLIKKRYAKTSKGFGFVDFEQPLMATIALEELNGKEFHGRIVELKPA 249
CKV +SN Y+ TEE+++ +CS AG V AVK+IK ++ K S+G+G+V++ AT A+ LN + GR V + A
Sbjct: 80 CKVHVSNFPYTTTEEELREWCSQAGEVFAVKIIKNQWTKKSQGYGYVEYTISPYATAAINFLNETQLGGRTVYIAEA 156
BLAST of mRNA_M-pyrifera_M_contig13422.5956.1 vs. uniprot
Match: A0A1F8CW49_9BACT (RNA-binding protein n=1 Tax=Candidatus Woesebacteria bacterium RIFOXYB1_FULL_38_16 TaxID=1802538 RepID=A0A1F8CW49_9BACT) HSP 1 Score: 64.3 bits (155), Expect = 2.700e-10 Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 22 KVMISNLDYSLTEEDVKVFCSTAGPVTAVKLIKKRYAKTSKGFGFVDFEQPLMATIALEELNGKEFHGRIVELKPAITARE 264
K+ + NLDYS+T+E ++ + + AG V +I +Y+ SKGFGFV+FE A A+E N K+F+GR + + A RE
Sbjct: 4 KLYVGNLDYSVTQEQIREYFAQAGNVIDAVVIMDKYSGRSKGFGFVEFETEEEAKKAIEMFNEKDFNGRNIVVNVARPPRE 84
BLAST of mRNA_M-pyrifera_M_contig13422.5956.1 vs. uniprot
Match: A0A2E3VY94_9PROT (RNA-binding protein n=2 Tax=Bacteriovoracales TaxID=2024979 RepID=A0A2E3VY94_9PROT) HSP 1 Score: 64.3 bits (155), Expect = 4.140e-10 Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 22 KVMISNLDYSLTEEDVKVFCSTAGPVTAVKLIKKRYAKTSKGFGFVDFEQPLMATIALEELNGKEFHGRIVEL 240
K+ + NL Y +TE++V + G T+VKLI R KGFGFV+ E A ++E+NGK+FHGR +++
Sbjct: 3 KLYVGNLPYEITEDEVSEAFNEFGTTTSVKLITDRDTGRKKGFGFVEMESAEQAQAVVDEMNGKDFHGRTLKV 75
BLAST of mRNA_M-pyrifera_M_contig13422.5956.1 vs. uniprot
Match: V5RU34_9BACT (RNP-1 like protein RNA-binding protein n=1 Tax=Candidatus Saccharibacteria bacterium RAAC3_TM7_1 TaxID=1394711 RepID=V5RU34_9BACT) HSP 1 Score: 63.9 bits (154), Expect = 5.930e-10 Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 25 VMISNLDYSLTEEDVKVFCSTAGPVTAVKLIKKRYAKTSKGFGFVDFEQPLMATIALEELNGKEFHGRIVELKPAITAREKRMQEATG 288
+ I +L YS T++ +K F T GPV + ++I R + SKGFGFV+FE A++ELNGKE GR + + A ++ +++ G
Sbjct: 6 LFIGSLAYSTTDDSLKAFFETVGPVASARVITDRDSGRSKGFGFVEFENDSDNQKAVDELNGKELDGREINVSLAKPKEDRPRRDSNG 93
BLAST of mRNA_M-pyrifera_M_contig13422.5956.1 vs. uniprot
Match: A0A2M7NHU7_9BACT (RNA-binding protein n=1 Tax=Flexibacter sp. CG_4_10_14_3_um_filter_32_15 TaxID=1975530 RepID=A0A2M7NHU7_9BACT) HSP 1 Score: 63.2 bits (152), Expect = 8.850e-10 Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 25 VMISNLDYSLTEEDVKVFCSTAGPVTAVKLIKKRYAKTSKGFGFVDFEQPLMATIALEELNGKEFHGRIVELKPAI 252
+ +SNL YS+ EE+++ S G VT+ K+I R S+GFGFV+ E A+EELNG E R +++K AI
Sbjct: 3 IYVSNLPYSILEEELEAIFSELGVVTSTKIITDRETGRSRGFGFVEMETEEDGLAAIEELNGIELSSREIQVKKAI 78
BLAST of mRNA_M-pyrifera_M_contig13422.5956.1 vs. uniprot
Match: A0A839JJR8_9BACT (RNA-binding protein n=3 Tax=unclassified Saccharibacteria TaxID=1895827 RepID=A0A839JJR8_9BACT) HSP 1 Score: 62.8 bits (151), Expect = 1.740e-9 Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 25 VMISNLDYSLTEEDVKVFCSTAGPVTAVKLIKKRYAKTSKGFGFVDFEQPLMATIALEELNGKEFHGRIVELKPA 249
+ I +L Y+ T++ +K F T GPV ++I R + SKGFGFV++E + A++ELNGKE GR + + A
Sbjct: 4 LFIGSLAYATTDDTLKAFFETVGPVKDARVITDRDSGRSKGFGFVEYEDEALNEKAIDELNGKELDGRAIAVSVA 78
BLAST of mRNA_M-pyrifera_M_contig13422.5956.1 vs. uniprot
Match: A0A3C1WP34_9BACT (RNA-binding protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3C1WP34_9BACT) HSP 1 Score: 62.0 bits (149), Expect = 2.190e-9 Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 31 ISNLDYSLTEEDVKVFCSTAGPVTAVKLIKKRYAKTSKGFGFVDFEQPLMATIALEELNGKEFHGRIVELKPA 249
+ NL+YSLTEE+++ + +G V++VK+IK R +KG+GFV+ A+E +NG + GR +E+ PA
Sbjct: 5 VRNLNYSLTEEELREVFAQSGEVSSVKIIKDRITGRAKGYGFVEMPNDEEGKNAIERINGTDVKGRNIEVSPA 77 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13422.5956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig13422.5956.1 >prot_M-pyrifera_M_contig13422.5956.1 ID=prot_M-pyrifera_M_contig13422.5956.1|Name=mRNA_M-pyrifera_M_contig13422.5956.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp MISNLDYSLTEEDVKVFCSTAGPVTAVKLIKKRYAKTSKGFGFVDFEQPLback to top mRNA from alignment at M-pyrifera_M_contig13422:2504..4755- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig13422.5956.1 ID=mRNA_M-pyrifera_M_contig13422.5956.1|Name=mRNA_M-pyrifera_M_contig13422.5956.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2252bp|location=Sequence derived from alignment at M-pyrifera_M_contig13422:2504..4755- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig13422:2504..4755- >mRNA_M-pyrifera_M_contig13422.5956.1 ID=mRNA_M-pyrifera_M_contig13422.5956.1|Name=mRNA_M-pyrifera_M_contig13422.5956.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig13422:2504..4755- (Macrocystis pyrifera P11B4 male)back to top |