mRNA_M-pyrifera_M_contig13420.5955.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13420.5955.1
Unique NamemRNA_M-pyrifera_M_contig13420.5955.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13420.5955.1 vs. uniprot
Match: D8LDQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ0_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 2.810e-34
Identity = 79/145 (54.48%), Postives = 90/145 (62.07%), Query Frame = 1 
Query:    1 QALRTPNAEGMHWQKASLRTGESLDNLRELLKKAGGKRAADYDGLNRRIEDLQDSLKGVRTSLVLAVRTVRVTGYGEETQEFRLLPRSRAGEWEGGGQGTDDVFSGLRLRSPCGESLKECTCGASAPPPQPIQKSSLTAAIELGR 435
            QA RTPN  G+HWQKA LRTGES D+LR LL KAG K   D+D LN RIEDLQ+S+K +R  LV +VR  RV  +GEETQE RL  R   GE              LRL  PCG SL +C CGAS+ PP P+   SL  AIE  R
Sbjct:   23 QAERTPNVGGIHWQKAGLRTGESQDHLRRLLGKAGSKFEGDFDALNLRIEDLQESIKRIREYLVRSVRAFRVNKFGEETQELRLRLRGGGGE--------------LRLPPPCGYSLADCVCGASSSPPPPVHAGSLGDAIEAAR 153
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BLAST of mRNA_M-pyrifera_M_contig13420.5955.1 vs. uniprot
Match: A0A6H5JG49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG49_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 6.970e-32
Identity = 76/145 (52.41%), Postives = 89/145 (61.38%), Query Frame = 1 
Query:    1 QALRTPNAEGMHWQKASLRTGESLDNLRELLKKAGGKRAADYDGLNRRIEDLQDSLKGVRTSLVLAVRTVRVTGYGEETQEFRLLPRSRAGEWEGGGQGTDDVFSGLRLRSPCGESLKECTCGASAPPPQPIQKSSLTAAIELGR 435
            QA RTPN  G+HWQKA  RTGES D+LR LL+KAG K   ++D LN RIEDLQ+S+K +R  LV +VR VRV  +GEETQE RL  R   GE              LRL  PCG SL +C CGAS+ P   +   SL  AIE  R
Sbjct:   23 QAERTPNVGGIHWQKAGPRTGESQDHLRRLLRKAGSKFEGEFDALNLRIEDLQESIKRIREYLVRSVRAVRVNKFGEETQELRLRLRGGGGE--------------LRLPPPCGYSLADCVCGASSSPXXXVHAGSLGNAIEAAR 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13420.5955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDQ0_ECTSI2.810e-3454.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG49_9PHAE6.970e-3252.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13420contigM-pyrifera_M_contig13420:5937..7689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size861
Cds size831
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13420.5955.1prot_M-pyrifera_M_contig13420.5955.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13420 5967..7689 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815816.897747-UTR-M-pyrifera_M_contig13420:5936..59661622815816.897747-UTR-M-pyrifera_M_contig13420:5936..5966Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13420 5937..5966 +
1692277585.4433947-UTR-M-pyrifera_M_contig13420:5936..59661692277585.4433947-UTR-M-pyrifera_M_contig13420:5936..5966Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13420 5937..5966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815816.9104445-CDS-M-pyrifera_M_contig13420:5966..60471622815816.9104445-CDS-M-pyrifera_M_contig13420:5966..6047Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13420 5967..6047 +
1692277585.4547513-CDS-M-pyrifera_M_contig13420:5966..60471692277585.4547513-CDS-M-pyrifera_M_contig13420:5966..6047Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13420 5967..6047 +
1622815816.9264863-CDS-M-pyrifera_M_contig13420:6771..73121622815816.9264863-CDS-M-pyrifera_M_contig13420:6771..7312Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13420 6772..7312 +
1692277585.4642854-CDS-M-pyrifera_M_contig13420:6771..73121692277585.4642854-CDS-M-pyrifera_M_contig13420:6771..7312Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13420 6772..7312 +
1622815816.937764-CDS-M-pyrifera_M_contig13420:7480..76891622815816.937764-CDS-M-pyrifera_M_contig13420:7480..7689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13420 7481..7689 +
1692277585.4729817-CDS-M-pyrifera_M_contig13420:7480..76891692277585.4729817-CDS-M-pyrifera_M_contig13420:7480..7689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13420 7481..7689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13420.5955.1

>prot_M-pyrifera_M_contig13420.5955.1 ID=prot_M-pyrifera_M_contig13420.5955.1|Name=mRNA_M-pyrifera_M_contig13420.5955.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=277bp
MHWQKASLRTGESLDNLRELLKKAGGKRAADYDGLNRRIEDLQDSLKGVR
TSLVLAVRTVRVTGYGEETQEFRLLPRSRAGEWEGGGQGTDDVFSGLRLR
SPCGESLKECTCGASAPPPQPIQKSSLTAAIELGRKEAAAAASAAAVVGG
AGRGVDGAEKLVARHRHDGRGCEEVDPIAGRTVRAGMGGGENKAKKRRVV
LRGGDGKTNGRGDSTGGSGGCGDDGDGFNSSLDEIKRQMGKNPATLDRSR
DALEEEIKAAEGREWGAGRGGGGRRSS
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mRNA from alignment at M-pyrifera_M_contig13420:5937..7689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13420.5955.1 ID=mRNA_M-pyrifera_M_contig13420.5955.1|Name=mRNA_M-pyrifera_M_contig13420.5955.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1753bp|location=Sequence derived from alignment at M-pyrifera_M_contig13420:5937..7689+ (Macrocystis pyrifera P11B4 male)
CAGGCCCTGCGCACGCCGAATGCGGAGGGGATGCACTGGCAGAAGGCGAG
CCTGCGGACTGGGGAGTCTCTCGACAACCTCCGCGAGCTGCTGAAGAAAG
CGGGAGGCAAGGTAAGGTTAAGGTTAACCCCACTAGTGCAGCCGCACCCA
CGTTTTTGAAGACATACAGCTTGAAATGAGGCTGACTGTTTCGTATATTT
CACCCGATTTTGGACAAAGGAATTTGGGCCAGTTCGCCATCCGTTAGAAA
TCGAGCCTGCAAAATCGGCCAACCCCACTATAGTATATATCTCTCGAAGG
TCGATAAAAACAGCTCATTGAGAGAGCAGGGGGTGGTTTTTAACATCTCC
GGGAGAAAAAGCCTGCGAGGTGTTCAACATTCCTGTTTCGGTTTCGTCTG
CCATGAAAAGCCTGCGAGGTATTGAACATTCCTGTTTCGATTTCGTCTGC
CATGAGAGTTAGCCTCAGTGTGGGATGCGTAAAAGGTTAGTCATTTAGAA
CTCACCCGGGATGAAAACAAAAAGGCCTTCTTCCGCCCGACTCGCCTTCC
TTTCTCGACCGTCTCGAGGTTGTTGACGCCATATGTATTGTATTTCCGTC
CCTCTCGTCTACAATAACCTGGCTGTGGTTACTTTTCCCCCCTCCTCCCT
GGCCTGCAAACCAGCACGCCGCACACGAGCGGCTGCTATATAAACGTGAG
TAGCGCCGTCAATTTTGCGGCTTCAAGAGGAAGCGATGGCCTCTTAAGTA
TGTAAAAATTGAGATTCAGAGTAGGTTCTCCTGGGCCCATCCTGTTCCTG
ACGCTCATTTGTTTTTGTTTGTTTCGACCCCGCAGCGCGCCGCCGACTAC
GACGGGCTCAACCGCAGGATAGAGGACCTGCAGGACAGCCTTAAGGGAGT
CCGAACCTCCCTCGTGCTGGCGGTGCGGACCGTGCGCGTCACGGGCTACG
GAGAGGAGACGCAGGAGTTCCGGCTTCTGCCGCGCAGCCGGGCTGGAGAG
TGGGAGGGGGGGGGGCAGGGGACGGACGATGTTTTTTCGGGGCTACGTCT
CCGGTCCCCCTGCGGGGAAAGCCTCAAGGAATGCACCTGCGGAGCCTCGG
CGCCCCCTCCGCAACCCATCCAGAAGAGTAGCCTAACCGCGGCAATTGAG
CTGGGCAGAAAAGAAGCTGCTGCTGCTGCTTCCGCGGCGGCGGTGGTGGG
AGGGGCTGGGAGGGGTGTCGACGGCGCGGAGAAGCTGGTGGCACGGCATC
GACATGATGGACGCGGGTGCGAGGAAGTGGACCCGATTGCCGGTAGGACG
GTGCGGGCAGGGATGGGGGGGGGTGAGAACAAGGCTAAAAAGCGGCGCGT
CGTCCTCCGTGGCGGCGACGGAAAAAGTGAACGGGGAGGGGGGGATCGCG
GCCAGCACAACGATACGATGCTTTGTTCTTCTTCCCCTTCCTCTCCAACA
GCAGCAGCAGCAAGGACAGCAACGGCAGCATCGAGGGAGGTTAGAGGCGA
CAAGGGCTGGGGCCGACAGACGCACCGAGTTGATATCGGTGAAGCAAACG
GGAGAGGTGACAGTACTGGCGGCAGCGGCGGCTGCGGCGACGACGGCGAC
GGCTTCAACAGTAGCCTGGACGAAATCAAGCGCCAGATGGGCAAGAACCC
GGCCACGCTCGACCGCAGCCGAGACGCGCTCGAAGAGGAGATCAAGGCCG
CCGAAGGGCGGGAGTGGGGAGCCGGCCGCGGCGGGGGAGGAAGAAGGAGT
TCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13420:5937..7689+

>mRNA_M-pyrifera_M_contig13420.5955.1 ID=mRNA_M-pyrifera_M_contig13420.5955.1|Name=mRNA_M-pyrifera_M_contig13420.5955.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1662bp|location=Sequence derived from alignment at M-pyrifera_M_contig13420:5937..7689+ (Macrocystis pyrifera P11B4 male)
ATGCACTGGCAGAAGGCGAGCCTGCGGACTGGGGAGTCTCTCGACAACCT
CCGCGAGCTGCTGAAGAAAGCGGGAGGCAAGATGCACTGGCAGAAGGCGA
GCCTGCGGACTGGGGAGTCTCTCGACAACCTCCGCGAGCTGCTGAAGAAA
GCGGGAGGCAAGCGCGCCGCCGACTACGACGGGCTCAACCGCAGGATAGA
GGACCTGCAGGACAGCCTTAAGGGAGTCCGAACCTCCCTCGTGCTGGCGG
TGCGGACCGTGCGCGTCACGGGCTACGGAGAGGAGACGCAGGAGTTCCGG
CTTCTGCCGCGCAGCCGGGCTGGAGAGTGGGAGGGGGGGGGGCAGGGGAC
GGACGATGTTTTTTCGGGGCTACGTCTCCGGTCCCCCTGCGGGGAAAGCC
TCAAGGAATGCACCTGCGGAGCCTCGGCGCCCCCTCCGCAACCCATCCAG
AAGAGTAGCCTAACCGCGGCAATTGAGCTGGGCAGAAAAGAAGCTGCTGC
TGCTGCTTCCGCGGCGGCGGTGGTGGGAGGGGCTGGGAGGGGTGTCGACG
GCGCGGAGAAGCTGGTGGCACGGCATCGACATGATGGACGCGGGTGCGAG
GAAGTGGACCCGATTGCCGGTAGGACGGTGCGGGCAGGGATGGGGGGGGG
TGAGAACAAGGCTAAAAAGCGGCGCGTCGTCCTCCGTGGCGGCGACGGAA
AAACGCGCCGCCGACTACGACGGGCTCAACCGCAGGATAGAGGACCTGCA
GGACAGCCTTAAGGGAGTCCGAACCTCCCTCGTGCTGGCGGTGCGGACCG
TGCGCGTCACGGGCTACGGAGAGGAGACGCAGGAGTTCCGGCTTCTGCCG
CGCAGCCGGGCTGGAGAGTGGGAGGGGGGGGGGCAGGGGACGGACGATGT
TTTTTCGGGGCTACGTCTCCGGTCCCCCTGCGGGGAAAGCCTCAAGGAAT
GCACCTGCGGAGCCTCGGCGCCCCCTCCGCAACCCATCCAGAAGAGTAGC
CTAACCGCGGCAATTGAGCTGGGCAGAAAAGAAGCTGCTGCTGCTGCTTC
CGCGGCGGCGGTGGTGGGAGGGGCTGGGAGGGGTGTCGACGGCGCGGAGA
AGCTGGTGGCACGGCATCGACATGATGGACGCGGGTGCGAGGAAGTGGAC
CCGATTGCCGGTAGGACGGTGCGGGCAGGGATGGGGGGGGGTGAGAACAA
GGCTAAAAAGCGGCGCGTCGTCCTCCGTGGCGGCGACGGAAAAACAAACG
GGAGAGGTGACAGTACTGGCGGCAGCGGCGGCTGCGGCGACGACGGCGAC
GGCTTCAACAGTAGCCTGGACGAAATCAAGCGCCAGATGGGCAAGAACCC
GGCCACGCTCGACCGCAGCCGAGACGCGCTCGAAGAGGAGATCAAGGCCG
CCGAAGGGCGGGAGTGGGGAGCCGGCCGCGGCGGGGGAGGAAGAAGGAGT
TCCCAAACGGGAGAGGTGACAGTACTGGCGGCAGCGGCGGCTGCGGCGAC
GACGGCGACGGCTTCAACAGTAGCCTGGACGAAATCAAGCGCCAGATGGG
CAAGAACCCGGCCACGCTCGACCGCAGCCGAGACGCGCTCGAAGAGGAGA
TCAAGGCCGCCGAAGGGCGGGAGTGGGGAGCCGGCCGCGGCGGGGGAGGA
AGAAGGAGTTCC
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