mRNA_M-pyrifera_M_contig13363.5934.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13363.5934.1
Unique NamemRNA_M-pyrifera_M_contig13363.5934.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13363.5934.1 vs. uniprot
Match: D7FLF7_ECTSI (Probable Spc3 homolog, subunit of Signal Peptidase Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF7_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 2.360e-55
Identity = 92/105 (87.62%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTFLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDAELAPAFNWNVKQLFAYVVAEYKTKTNSFNQ----VRFA 303
            MHTAWVR+NAVVFFGLTVLL LSVLTALST+LHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDA+LAPAFNWNVKQLFA+VVAEY+T TN  NQ    VRFA
Sbjct:    1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQASQSVRFA 105
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BLAST of mRNA_M-pyrifera_M_contig13363.5934.1 vs. uniprot
Match: A0A835YJ42_9STRA (Signal peptidase 22kDa subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ42_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.780e-36
Identity = 59/98 (60.20%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTFLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDAELAPAFNWNVKQLFAYVVAEYKTKTNSFNQV 294
            M+T WVRLNAVVFFGLTVLLGL+++TA ST+LH+G P V+ L ++K ++FR     DR ++N D++A+LAPAFNWN+KQ+F +VVAE+ TKTN  NQ+
Sbjct:    1 MNTVWVRLNAVVFFGLTVLLGLALMTATSTYLHEGHPTVKTLRLNKIKSFRSQSKVDRAIINFDLEADLAPAFNWNIKQIFVFVVAEFATKTNPLNQI 98
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BLAST of mRNA_M-pyrifera_M_contig13363.5934.1 vs. uniprot
Match: A0A7S2XZ74_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ74_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.240e-34
Identity = 59/98 (60.20%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTFLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDAELAPAFNWNVKQLFAYVVAEYKTKTNSFNQV 294
            M+T WVRLNAVVFFG TVLL L+ + + STFLH+G P ++ LG++  R+ R  +G DR+L++ D+DA+L+ AFNWN+KQLF +VVAEY TKTN FNQV
Sbjct:    1 MNTIWVRLNAVVFFGFTVLLCLACMCSFSTFLHKGEPHIKYLGLNTIRSMRAQKGGDRVLISFDIDADLSGAFNWNIKQLFVFVVAEYATKTNPFNQV 98
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BLAST of mRNA_M-pyrifera_M_contig13363.5934.1 vs. uniprot
Match: A0A6V1NT77_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NT77_HETAK)

HSP 1 Score: 122 bits (307), Expect = 2.130e-33
Identity = 57/98 (58.16%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTFLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDAELAPAFNWNVKQLFAYVVAEYKTKTNSFNQV 294
            M+T WVR+NAVVFFGLTVLL L+++ A ST+LH+G P+++ LGV+  R+ +   G DR L++ D+DA+L PAFNWN+KQLF +VVAEY T+ N  NQV
Sbjct:    4 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKNPLNQV 101
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BLAST of mRNA_M-pyrifera_M_contig13363.5934.1 vs. uniprot
Match: A0A7S4J3F9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3F9_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.030e-30
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTFLHQGF--PDVRKLGVSKFRTFRKSEGTDRLLLNIDVDAELAPAFNWNVKQLFAYVVAEYKTKTNSFNQV 294
            MHT WVRLNAVVFFGLTVLLGLS+L ALS   H     PDV++L +   R+ +   G DR LL+ D+D +L PAF+WN+KQLF YVVA Y++ TN  NQ+
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLGLSILAALSKSGHSNRYRPDVKRLELKTLRSLKSHGGVDRALLSFDIDVDLRPAFHWNIKQLFVYVVASYESDTNPNNQI 100
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BLAST of mRNA_M-pyrifera_M_contig13363.5934.1 vs. uniprot
Match: A0A7S2SN40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN40_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.040e-30
Identity = 57/98 (58.16%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTFLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDAELAPAFNWNVKQLFAYVVAEYKTKTNSFNQV 294
            MHT WVRLNAVVFFGLTV++ L+VLT  ST  H+G+P V  L ++   T R     D  +L+ D+ A+L+PAFNWN+KQLF +VVAEY+TKTN  NQV
Sbjct:    1 MHTVWVRLNAVVFFGLTVIVVLAVLTWFSTVTHRGYPTVDTLQLNSIGTLRNHGERDIAILSFDLHADLSPAFNWNIKQLFVFVVAEYRTKTNPLNQV 98
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BLAST of mRNA_M-pyrifera_M_contig13363.5934.1 vs. uniprot
Match: A0A7S2XM83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM83_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.950e-29
Identity = 58/100 (58.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTFLH--QGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDAELAPAFNWNVKQLFAYVVAEYKTKTNSFNQV 294
            MHT WVRLNAVVFFGLTVLLGLSVL A+S   H  +  P V KL +++ R+ +   G DR LL+ D+ A++ PAF+WN+KQLF YVVA Y+T TN  NQ+
Sbjct:    5 MHTVWVRLNAVVFFGLTVLLGLSVLAAISAIGHSTRHKPVVSKLSLNQLRSLKSHGGVDRALLSFDLHADMRPAFHWNIKQLFVYVVASYETDTNPNNQI 104
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BLAST of mRNA_M-pyrifera_M_contig13363.5934.1 vs. uniprot
Match: A0A7R9UGA1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGA1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.110e-29
Identity = 59/99 (59.60%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTFL-HQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDAELAPAFNWNVKQLFAYVVAEYKTKTNSFNQV 294
            MHT WVRLNAVVFF  TVLL LS L A+ T L H G P V  L + + R+ RK    DR +L  D+DA+L  AFNWNVKQLF +VVAEY T+TN  NQV
Sbjct:   18 MHTIWVRLNAVVFFSFTVLLALSTLAAVQTMLFHDGQPVVHTLRLRELRSLRKHANIDRAMLTFDIDADLRGAFNWNVKQLFVFVVAEYATQTNPLNQV 116
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BLAST of mRNA_M-pyrifera_M_contig13363.5934.1 vs. uniprot
Match: B8CCG8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCG8_THAPS)

HSP 1 Score: 108 bits (271), Expect = 5.600e-28
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTFLH--QGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDAELAPAFNWNVKQLFAYVVAEYKTKTNSFNQV 294
            MHT WVRLNAVVFFGLTVLL LS+L ALS   H  +  P + KL ++  R+ +   G DR LL+ D+ A++ PAF+WN+KQ+F YVVA YKT TN  NQV
Sbjct:    1 MHTVWVRLNAVVFFGLTVLLCLSILAALSKIGHTRRYQPKIHKLALNNLRSVKNHGGVDRALLSFDLHADMNPAFHWNIKQIFVYVVATYKTDTNPKNQV 100
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BLAST of mRNA_M-pyrifera_M_contig13363.5934.1 vs. uniprot
Match: A0A6T8P1E8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8P1E8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.020e-28
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 MHTAWVRLNAVVFFGLTVLLGLSVLTALSTFLH--QGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDAELAPAFNWNVKQLFAYVVAEYKTKTNSFNQV 294
            MHT W+RLN VV FGLT LLG S+L ALST  H  +  P V KL ++  ++ +   G DR LL+ D+ A+L PAF+WN+KQLF YVVA YKTKTN  N+V
Sbjct:   40 MHTVWIRLNGVVMFGLTALLGFSILAALSTLGHDKRHQPAVTKLQLNTLKSLKSHGGVDRALLSFDLHADLRPAFHWNIKQLFVYVVATYKTKTNPLNEV 139
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13363.5934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF7_ECTSI2.360e-5587.62Probable Spc3 homolog, subunit of Signal Peptidase... [more]
A0A835YJ42_9STRA1.780e-3660.20Signal peptidase 22kDa subunit n=1 Tax=Tribonema m... [more]
A0A7S2XZ74_9STRA3.240e-3460.20Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1NT77_HETAK2.130e-3358.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4J3F9_9STRA3.030e-3058.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2SN40_9STRA3.040e-3058.16Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2XM83_9STRA2.950e-2958.00Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7R9UGA1_9STRA7.110e-2959.60Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
B8CCG8_THAPS5.600e-2857.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6T8P1E8_9STRA7.020e-2856.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13363contigM-pyrifera_M_contig13363:7891..8318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue6.7e-42
Seed eggNOG ortholog2880.D7FLF7
Preferred nameSPCS3
KEGG koko:K12948
KEGG Pathwayko03060,map03060
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0005911,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009506,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0030054,GO:0030154,GO:0030312,GO:0031984,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045444,GO:0046907,GO:0048869,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055044,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
EggNOG free text desc.signal peptide processing
EggNOG OGsKOG3372@1,KOG3372@2759
Ec32 ortholog descriptionProbable Spc3 homolog, subunit of Signal Peptidase Complex
Ec32 orthologEc-12_007990.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size303
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.030821-CDS-M-pyrifera_M_contig13363:7890..80901622815815.030821-CDS-M-pyrifera_M_contig13363:7890..8090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13363 7891..8090 -
1692277584.2853673-CDS-M-pyrifera_M_contig13363:7890..80901692277584.2853673-CDS-M-pyrifera_M_contig13363:7890..8090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13363 7891..8090 -
1622815815.0443263-CDS-M-pyrifera_M_contig13363:8215..83181622815815.0443263-CDS-M-pyrifera_M_contig13363:8215..8318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13363 8216..8318 -
1692277584.2965968-CDS-M-pyrifera_M_contig13363:8215..83181692277584.2965968-CDS-M-pyrifera_M_contig13363:8215..8318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13363 8216..8318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13363.5934.1prot_M-pyrifera_M_contig13363.5934.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13363 7891..8318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13363.5934.1

>prot_M-pyrifera_M_contig13363.5934.1 ID=prot_M-pyrifera_M_contig13363.5934.1|Name=mRNA_M-pyrifera_M_contig13363.5934.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MHTAWVRLNAVVFFGLTVLLGLSVLTALSTFLHQGFPDVRKLGVSKFRTF
RKSEGTDRLLLNIDVDAELAPAFNWNVKQLFAYVVAEYKTKTNSFNQVRF
A
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mRNA from alignment at M-pyrifera_M_contig13363:7891..8318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13363.5934.1 ID=mRNA_M-pyrifera_M_contig13363.5934.1|Name=mRNA_M-pyrifera_M_contig13363.5934.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=428bp|location=Sequence derived from alignment at M-pyrifera_M_contig13363:7891..8318- (Macrocystis pyrifera P11B4 male)
ATGCACACAGCGTGGGTCCGGCTCAATGCGGTGGTATTCTTTGGACTTAC
GGTTCTTCTTGGGTTAAGCGTACTCACCGCGCTGAGTACTTTCCTCCACC
AAGGTAATAATGGGAACCCAATATGTGCCCAATACTATTAATAGAACCAA
TTGGGTTTGGACGGCCCGCGACACGTGTTTCTTACAACGATGTTCACGTT
TGTTCTGCCTGCCTGCCACCTTGTCCAGGATTTCCGGATGTCAGGAAGTT
AGGCGTGAGCAAATTCCGGACGTTTCGAAAATCTGAAGGGACGGACCGAT
TGCTGCTGAACATCGATGTGGATGCGGAACTGGCCCCAGCGTTCAACTGG
AACGTCAAACAGCTCTTCGCCTATGTTGTTGCTGAATACAAAACCAAAAC
TAACTCCTTCAATCAGGTGAGGTTTGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13363:7891..8318-

>mRNA_M-pyrifera_M_contig13363.5934.1 ID=mRNA_M-pyrifera_M_contig13363.5934.1|Name=mRNA_M-pyrifera_M_contig13363.5934.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig13363:7891..8318- (Macrocystis pyrifera P11B4 male)
ATGCACACAGCGTGGGTCCGGCTCAATGCGGTGGTATTCTTTGGACTTAC
GGTTCTTCTTGGGTTAAGCGTACTCACCGCGCTGAGTACTTTCCTCCACC
AAGATGCACACAGCGTGGGTCCGGCTCAATGCGGTGGTATTCTTTGGACT
TACGGTTCTTCTTGGGTTAAGCGTACTCACCGCGCTGAGTACTTTCCTCC
ACCAAGGATTTCCGGATGTCAGGAAGTTAGGCGTGAGCAAATTCCGGACG
TTTCGAAAATCTGAAGGGACGGACCGATTGCTGCTGAACATCGATGTGGA
TGCGGAACTGGCCCCAGCGTTCAACTGGAACGTCAAACAGCTCTTCGCCT
ATGTTGTTGCTGAATACAAAACCAAAACTAACTCCTTCAATCAGGTGAGG
TTTGCCGATTTCCGGATGTCAGGAAGTTAGGCGTGAGCAAATTCCGGACG
TTTCGAAAATCTGAAGGGACGGACCGATTGCTGCTGAACATCGATGTGGA
TGCGGAACTGGCCCCAGCGTTCAACTGGAACGTCAAACAGCTCTTCGCCT
ATGTTGTTGCTGAATACAAAACCAAAACTAACTCCTTCAATCAGGTGAGG
TTTGCC
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