mRNA_M-pyrifera_M_contig1335.5928.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1335.5928.1
Unique NamemRNA_M-pyrifera_M_contig1335.5928.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1335.5928.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.750e-45
Identity = 78/139 (56.12%), Postives = 97/139 (69.78%), Query Frame = 1
Query:    1 TIIGVSANAYDTRPGEDYNMKGCGQDGCAPRLSRDDISD-DPESRWSCAQMIVPDGGLCEIEFVFQDPQDIKEVQVAFWKGDVRSRTLEVSVNDEVIGEFDSYTGAIFNTLDIQGVEVDRMRFTSVNLAEDEWISLLEV 414
            T +GV+A AYD RPGE     GCG+ GC P L+ D + + D ESRWSCA+ IVPDGG CEI F F  PQDI +VQVAFWKGD R+RTL+V +N + IGE++SY G+ FN+  IQ   V  +   SV +  D+WISLLEV
Sbjct:  258 TTVGVTATAYDDRPGESAGDVGCGEMGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGSTFNSFGIQENGVHTVTMESVGIDRDDWISLLEV 396          
BLAST of mRNA_M-pyrifera_M_contig1335.5928.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.050e-43
Identity = 73/138 (52.90%), Postives = 95/138 (68.84%), Query Frame = 1
Query:    1 TIIGVSANAYDTRPGEDYNMKGCGQDGCAPRLSRDDISDDPESRWSCAQMIVPDGGLCEIEFVFQDPQDIKEVQVAFWKGDVRSRTLEVSVNDEVIGEFDSYTGAIFNTLDIQGVEVDRMRFTSVNLAEDEWISLLEV 414
            T I  SA  +D RPG+     GCG+ GC P L+ D I+DD ESRWSCA+ IVPDGG CEIEF F  PQ++K++QV FWKG+ R+RTL+V +N E  GEFDS+ G++ +  D+   +V  +   S+ L  DEWISLLEV
Sbjct:  198 TAIAASATGFDERPGQASGDHGCGKYGCLPVLATDGITDDVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKINGEKFGEFDSHPGSVTSYFDVIAYDVHTVTLESLGLDTDEWISLLEV 335          
BLAST of mRNA_M-pyrifera_M_contig1335.5928.1 vs. uniprot
Match: D7G3F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F6_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.770e-42
Identity = 72/144 (50.00%), Postives = 97/144 (67.36%), Query Frame = 1
Query:    1 TIIGVSANAYDTRPGEDYNMKGCGQ---DGCAPRLSRDDISDDPESRWSCAQMIVPDGGLCEIEFVFQDPQDIKEVQVAFWKGDVRSRTLEVSVNDEVIGEFDSYTGAIFNTLDIQGVEVDRMRFTSVNLAEDEWISLLEVSVY 423
            T + VSA A+DTRPG      GCG+   +GC P  +RD IS++ ESRWSCA  IVP GG C+IE+VF +PQDI+++QVAFWKGD R RTLEV  +  +    +SY G+ FN L +    +  +   SV+L E+EWISL+EV ++
Sbjct:   79 TDVSVSATAHDTRPGSSSGDVGCGEAGGNGCTPANTRDGISNEAESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIQVAFWKGDERVRTLEVYFDGTLYRTHESYAGSTFNPLGVSATGISSVMLESVDLLENEWISLIEVLIF 222          
BLAST of mRNA_M-pyrifera_M_contig1335.5928.1 vs. uniprot
Match: D7FI81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI81_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.550e-39
Identity = 70/144 (48.61%), Postives = 95/144 (65.97%), Query Frame = 1
Query:    1 TIIGVSANAYDTRPGEDYNMKGCGQ---DGCAPRLSRDDISDDPESRWSCAQMIVPDGGLCEIEFVFQDPQDIKEVQVAFWKGDVRSRTLEVSVNDEVIGEFDSYTGAIFNTLDIQGVEVDRMRFTSVNLAEDEWISLLEVSVY 423
            T + VSA A+DTRPG      GCG+   DGCA   + D I  + ESRWSCA M+VPD G C+IEF F DPQDI ++QVAFW+G+ R+RT+++ ++ E+    +SY  + FNTL +   E   +   SV+L  DEWISLLEV ++
Sbjct:  163 TEVNVSATAHDTRPGSSSGDVGCGETGGDGCAAIKAHDGIISEIESRWSCATMLVPDEGPCQIEFSFADPQDIVDIQVAFWEGNERTRTVDIFIDGELTHTHESYADSTFNTLGVTATEASTVMLESVDLLSDEWISLLEVLIF 306          
BLAST of mRNA_M-pyrifera_M_contig1335.5928.1 vs. uniprot
Match: D7FI77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.070e-38
Identity = 70/142 (49.30%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    7 IGVSANAYDTRPGEDYNMKGCGQDG---CAPRLSRDDISDDPESRWSCAQMIVPDGGLCEIEFVFQDPQDIKEVQVAFWKGDVRSRTLEVSVNDEVIGEFDSYTGAIFNTLDIQGVEVDRMRFTSVNLAEDEWISLLEVSVY 423
            +GVSA A+DTRPG      GCG+ G   C    +RD I  + ESRWSCA  +VPD G C+IEF F +PQ I ++QVAFWKG+ R+RTL V VN E+    +SYT + FNTL +   E   +   S  L  DEWISL+EV ++
Sbjct:   29 VGVSATAHDTRPGNSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVPDEGPCQIEFTFAEPQHIVDIQVAFWKGNDRTRTLGVHVNGELTHTHESYTDSTFNTLGVTANEASTVMLESTALLSDEWISLIEVLIF 170          
BLAST of mRNA_M-pyrifera_M_contig1335.5928.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 6.970e-38
Identity = 71/141 (50.35%), Postives = 96/141 (68.09%), Query Frame = 1
Query:    1 TIIGVSANAYDTRPGEDYNMKGCGQ---DGCAPRLSRDDISDDPESRWSCAQMIVPDGGLCEIEFVFQDPQDIKEVQVAFWKGDVRSRTLEVSVNDEVIGEFDSYTGAIFNTLDIQGVEVDRMRFTSVNLAEDEWISLLEV 414
            T + VSA AYDTRPG      GCG+   +GC+P  +RD IS++ ESRWSCA  IVP GG C+IE+VF +PQDI++++VAFW GD R RTLEV  +  +    +SY G+ FN+L +    +  +   SV+L E+EWISL+EV
Sbjct:  485 TDVSVSATAYDTRPGSSSGDVGCGEAGGNGCSPANTRDGISNETESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIKVAFWMGDERVRTLEVYFDGTLHRTHESYAGSTFNSLGVSATGIGTVMLESVDLLENEWISLIEV 625          
BLAST of mRNA_M-pyrifera_M_contig1335.5928.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.810e-37
Identity = 70/144 (48.61%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 TIIGVSANAYDTRPGEDYNMKGCGQDG---CAPRLSRDDISDDPESRWSCAQMIVPDGGLCEIEFVFQDPQDIKEVQVAFWKGDVRSRTLEVSVNDEVIGEFDSYTGAIFNTLDIQGVEVDRMRFTSVNLAEDEWISLLEVSVY 423
            T +GVS+ A+D RPG+D    GCG+ G   C    +RD I  + ESRWSCA  +V D G C+IEF F +PQ I ++QVAFWKG+ R+RTLEV +N E+    +SY  A FNTL +   +V  +   SV L  DEWISL+EV ++
Sbjct:   95 TEVGVSSTAHDVRPGDD----GCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLIF 234          
BLAST of mRNA_M-pyrifera_M_contig1335.5928.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.900e-37
Identity = 64/113 (56.64%), Postives = 80/113 (70.80%), Query Frame = 1
Query:   79 GCAPRLSRDDISD-DPESRWSCAQMIVPDGGLCEIEFVFQDPQDIKEVQVAFWKGDVRSRTLEVSVNDEVIGEFDSYTGAIFNTLDIQGVEVDRMRFTSVNLAEDEWISLLEV 414
            GC P L+ D + + D ESRWSCA+ IVPDGG CEI F F  PQDI +VQVAFWKGD R+RTL+V +N + IGE++SY G+ FN+  IQ   V  +   SV +  D+WISLLEV
Sbjct:    2 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGSTFNSFGIQENGVHTVAMESVGIDADDWISLLEV 114          
BLAST of mRNA_M-pyrifera_M_contig1335.5928.1 vs. uniprot
Match: D7FI90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI90_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 4.790e-37
Identity = 71/144 (49.31%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    1 TIIGVSANAYDTRPGEDYNMKGCGQDG---CAPRLSRDDISDDPESRWSCAQMIVPDGGLCEIEFVFQDPQDIKEVQVAFWKGDVRSRTLEVSVNDEVIGEFDSYTGAIFNTLDIQGVEVDRMRFTSVNLAEDEWISLLEVSVY 423
            T +GVSA A+D RPG   N  GCG+ G   C    +RD I  D ESRWSCA  +VPD G C+IEF F +PQ+I ++QVAFW  + R  TLEV VN E+    +SY    FNTL +   E   +   SV L  DEWISLLEV ++
Sbjct:   27 TEVGVSATAHDVRPGSSGNDVGCGEVGSLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVNGELTHTHESYDDT-FNTLGVTATEASTVMLESVALLSDEWISLLEVQIF 169          
BLAST of mRNA_M-pyrifera_M_contig1335.5928.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 5.780e-36
Identity = 71/144 (49.31%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    1 TIIGVSANAYDTRPGEDYNMKGCGQDG---CAPRLSRDDISDDPESRWSCAQMIVPDGGLCEIEFVFQDPQDIKEVQVAFWKGDVRSRTLEVSVNDEVIGEFDSYTGAIFNTLDIQGVEVDRMRFTSVNLAEDEWISLLEVSVY 423
            T +GVSA A+D RP    +  GCGQ G   C    +RD I  D ESRWSCA ++VPD G C+IEF F +PQ++ ++QVAFWKG+ R+RTL V VN E+    +SY  + FNTL +   E   +   SV L  DEWISLLEV ++
Sbjct:  465 TEVGVSATAHDVRPRSSSDDVGCGQVGGLGCTATNTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWVHVNGELTHTHESYADSTFNTLGVTATEASTVMLESVALLSDEWISLLEVLIF 608          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1335.5928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8U9_9PHAE1.750e-4556.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFX1_9PHAE3.050e-4352.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G3F6_ECTSI2.770e-4250.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI81_ECTSI1.550e-3948.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI77_ECTSI1.070e-3849.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE6.970e-3850.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5F4_ECTSI1.810e-3748.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCQ5_ECTSI2.900e-3756.64Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FI90_ECTSI4.790e-3749.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI87_ECTSI5.780e-3649.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1335contigM-pyrifera_M_contig1335:5444..6657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog2880.D7FL48
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.6318705-CDS-M-pyrifera_M_contig1335:5443..57071622815814.6318705-CDS-M-pyrifera_M_contig1335:5443..5707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1335 5444..5707 +
1692277584.06168-CDS-M-pyrifera_M_contig1335:5443..57071692277584.06168-CDS-M-pyrifera_M_contig1335:5443..5707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1335 5444..5707 +
1622815814.6476479-CDS-M-pyrifera_M_contig1335:6498..66571622815814.6476479-CDS-M-pyrifera_M_contig1335:6498..6657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1335 6499..6657 +
1692277584.0715113-CDS-M-pyrifera_M_contig1335:6498..66571692277584.0715113-CDS-M-pyrifera_M_contig1335:6498..6657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1335 6499..6657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1335.5928.1prot_M-pyrifera_M_contig1335.5928.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1335 5444..6657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1335.5928.1

>prot_M-pyrifera_M_contig1335.5928.1 ID=prot_M-pyrifera_M_contig1335.5928.1|Name=mRNA_M-pyrifera_M_contig1335.5928.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
TIIGVSANAYDTRPGEDYNMKGCGQDGCAPRLSRDDISDDPESRWSCAQM
IVPDGGLCEIEFVFQDPQDIKEVQVAFWKGDVRSRTLEVSVNDEVIGEFD
SYTGAIFNTLDIQGVEVDRMRFTSVNLAEDEWISLLEVSVY
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mRNA from alignment at M-pyrifera_M_contig1335:5444..6657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1335.5928.1 ID=mRNA_M-pyrifera_M_contig1335.5928.1|Name=mRNA_M-pyrifera_M_contig1335.5928.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1214bp|location=Sequence derived from alignment at M-pyrifera_M_contig1335:5444..6657+ (Macrocystis pyrifera P11B4 male)
ACCATCATCGGCGTGTCCGCCAACGCCTACGACACGCGTCCCGGCGAGGA CTACAATATGAAGGGCTGTGGGCAAGACGGATGTGCACCCAGGCTATCCC GGGATGATATCAGTGACGACCCGGAGTCGAGGTGGTCCTGCGCGCAGATG ATAGTCCCCGACGGAGGGCTATGCGAGATAGAGTTCGTGTTCCAAGACCC TCAGGATATCAAGGAAGTCCAGGTGGCCTTCTGGAAGGGAGACGTACGCT CGCGCACTCTAGAGGTGATCTGAGGCGATCATGCCGCAAGGCACATATTT GTAGTACGTGTAAAGGCTTATGCAGCGCTTACTGTTACGTCACTTTGGTT CAACACGTACGTACATCGATGTTCGCAAATCGACGAACGACCGATGCAGA GCCTCACGCAAAAAAACTTCTCTCGATCAACCCAACCTTGTAAATGGTGC TGTATGACGTCTGTACCTGACTGGGAAGCTACGCATCTCAGCACCACCTC TGTGATCGAATTTTTGTATGTTCTACCAAGGTGCGAGCAATGTACAGCTG TGAGTACTTCCATGTGATTGTCTGGCATCATCGACGGTTACCTGATAACG ACCCGAACGTGTTCCGTTGGTGGCAGCGGTTCTATATCGGCGTCAAATTC CCATGTTACAAGGTTGATGGGCAGCTCGGGTCTAGCCTCGGGATCACAGT GGGTATTTCATACTTAACCAACCGTCTGGGAATGTAGTGCGGGTCATCCC AAGCACGGGCAGTTTTCTTGGCCTGCAACGTCACCACACGCACCATCTTA ACTGACTCGCCTCGAGTTGGGTACGTTTGCCTTGCCGTCTGCTTTATTCG TGTCTCCACACCAACCATTATTCGGACAAATGATGGAGTCGCCACGGAAA CTCATGCCAATATTACGTACGGTGCTATTGGTAGTAATTCTAGAGTTCGA CACGATTGGTACGCTATGTCGGCCGCATCACGTTGGATCCTGAAGTAAAA CGAAGTCGACACTGTCCGCTTGTCAAATCGTACCTCATTGGTGTATGATG TATAGGTTTCCGTCAACGATGAAGTCATAGGCGAGTTCGACTCATACACC GGAGCTATTTTCAACACACTCGACATCCAGGGCGTCGAGGTAGACCGCAT GAGATTCACGTCCGTCAACCTTGCCGAAGACGAATGGATCAGCCTTCTCG AGGTCAGTGTGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1335:5444..6657+

>mRNA_M-pyrifera_M_contig1335.5928.1 ID=mRNA_M-pyrifera_M_contig1335.5928.1|Name=mRNA_M-pyrifera_M_contig1335.5928.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig1335:5444..6657+ (Macrocystis pyrifera P11B4 male)
ACCATCATCGGCGTGTCCGCCAACGCCTACGACACGCGTCCCGGCGAGGA
CTACAATATGAAGGGCTGTGGGCAAGACGGATGTGCACCCAGGCTATCCC
GGGATGATATCAGTGACGACCCGGAGTCGAGGTGGTCCTGCGCGCAGATG
ATAGTCCCCGACGGAGGGCTATGCGAGATAGAGTTCGTGTTCCAAGACCC
TCAGGATATCAAGGAAGTCCAGGTGGCCTTCTGGAAGGGAGACGTACGCT
CGCGCACTCTAGAGACCATCATCGGCGTGTCCGCCAACGCCTACGACACG
CGTCCCGGCGAGGACTACAATATGAAGGGCTGTGGGCAAGACGGATGTGC
ACCCAGGCTATCCCGGGATGATATCAGTGACGACCCGGAGTCGAGGTGGT
CCTGCGCGCAGATGATAGTCCCCGACGGAGGGCTATGCGAGATAGAGTTC
GTGTTCCAAGACCCTCAGGATATCAAGGAAGTCCAGGTGGCCTTCTGGAA
GGGAGACGTACGCTCGCGCACTCTAGAGGTTTCCGTCAACGATGAAGTCA
TAGGCGAGTTCGACTCATACACCGGAGCTATTTTCAACACACTCGACATC
CAGGGCGTCGAGGTAGACCGCATGAGATTCACGTCCGTCAACCTTGCCGA
AGACGAATGGATCAGCCTTCTCGAGGTCAGTGTGTACGTTTCCGTCAACG
ATGAAGTCATAGGCGAGTTCGACTCATACACCGGAGCTATTTTCAACACA
CTCGACATCCAGGGCGTCGAGGTAGACCGCATGAGATTCACGTCCGTCAA
CCTTGCCGAAGACGAATGGATCAGCCTTCTCGAGGTCAGTGTGTAC
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