mRNA_M-pyrifera_M_contig13347.5926.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13347.5926.1
Unique NamemRNA_M-pyrifera_M_contig13347.5926.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13347.5926.1 vs. uniprot
Match: D7G0C7_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C7_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 4.470e-29
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:    7 FCARRKGLRKRLNDIAGATDERLWLDVDHRYERYKGVRSAWCNWRRFSKQQALEISVSFGGRTLSRVLTMLTTDLPHVHYGFPDLVLWKPRGRAGVSRGDRGG 315
            FC+RR+GL +RL  I+ ++DE+LWLDV  RY+R+ GV + WC+W RF KQQ +EI  +FGGR LS +L+  TT +  + +GFPD+VLW+P+   GV+    GG
Sbjct:  739 FCSRREGLSRRLRTISRSSDEQLWLDVGQRYDRFSGVVAIWCDWNRFPKQQVMEICAAFGGRRLSDLLSTTTTTITQLRFGFPDVVLWRPKSDKGVAESRSGG 841
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BLAST of mRNA_M-pyrifera_M_contig13347.5926.1 vs. uniprot
Match: D7G0C5_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C5_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.420e-20
Identity = 51/113 (45.13%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:    7 FCARRKGLRKRLNDIAGATDERLWLDVDHRYERYKGVRSAWCNWRRFSKQQALEISVSFGGRTLSRVLTMLTTDLPHVHYGFPDLVLWKPRGR-----AGVSRGDRGGRNWRT 330
            F  RR+GL  RL  I    D +L+ DV  RY+R +GVRS WC+W  F KQQ +EI V+FGG+ LS +L  LT +L  +  GFPD+VL +P+G         S G R  R+W+ 
Sbjct:  826 FTTRREGLPDRLATIGQYADRQLFSDVGQRYDRLRGVRSGWCDWNVFPKQQIMEICVAFGGKRLSDLLKTLTNNLADMDKGFPDVVLRRPKGADFGAGGSSSGGGRDERDWKA 938
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BLAST of mRNA_M-pyrifera_M_contig13347.5926.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.930e-8
Identity = 36/105 (34.29%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:    7 FCARRKGLRKRLNDIAGATDERLWLDVDHRYERYKGVRSAWCN--WRRFSKQQALEISVSFGGRTLSRVLTMLTTDLPHVHYGFPDLVLWKPRGRAGVSRGDRGG 315
            FC+RR+GL  RL  I+ ++DE+LWLDV  RY+R+   +  WC+  WR +              R   R             +GFPD+VLW+P+   G +    GG
Sbjct:  857 FCSRREGLSIRLRTISRSSDEQLWLDVGQRYDRFP-KQQVWCDRAWRYYLDND----------RASKRR-----------RFGFPDVVLWRPKSDKGAAESRSGG 939
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13347.5926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0C7_ECTSI4.470e-2950.49Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
D7G0C5_ECTSI1.420e-2045.13Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
A0A6H5KFJ9_9PHAE6.930e-834.29Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13347contigM-pyrifera_M_contig13347:352..3513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.7e-25
Seed eggNOG ortholog2880.D7G0C7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphodiesterase I activity
EggNOG OGsKOG2143@1,KOG2143@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size343
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13347.5926.1prot_M-pyrifera_M_contig13347.5926.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13347 352..3513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.4537053-CDS-M-pyrifera_M_contig13347:351..4551622815814.4537053-CDS-M-pyrifera_M_contig13347:351..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13347 352..455 +
1692277583.9363587-CDS-M-pyrifera_M_contig13347:351..4551692277583.9363587-CDS-M-pyrifera_M_contig13347:351..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13347 352..455 +
1622815814.46588-CDS-M-pyrifera_M_contig13347:1913..19681622815814.46588-CDS-M-pyrifera_M_contig13347:1913..1968Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13347 1914..1968 +
1692277583.9466639-CDS-M-pyrifera_M_contig13347:1913..19681692277583.9466639-CDS-M-pyrifera_M_contig13347:1913..1968Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13347 1914..1968 +
1622815814.4781513-CDS-M-pyrifera_M_contig13347:2494..25741622815814.4781513-CDS-M-pyrifera_M_contig13347:2494..2574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13347 2495..2574 +
1692277583.9564497-CDS-M-pyrifera_M_contig13347:2494..25741692277583.9564497-CDS-M-pyrifera_M_contig13347:2494..2574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13347 2495..2574 +
1622815814.4900095-CDS-M-pyrifera_M_contig13347:3410..35131622815814.4900095-CDS-M-pyrifera_M_contig13347:3410..3513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13347 3411..3513 +
1692277583.966282-CDS-M-pyrifera_M_contig13347:3410..35131692277583.966282-CDS-M-pyrifera_M_contig13347:3410..3513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13347 3411..3513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13347.5926.1

>prot_M-pyrifera_M_contig13347.5926.1 ID=prot_M-pyrifera_M_contig13347.5926.1|Name=mRNA_M-pyrifera_M_contig13347.5926.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
MHFCARRKGLRKRLNDIAGATDERLWLDVDHRYERYKGVRSAWCNWRRFS
KQQALEISVSFGGRTLSRVLTMLTTDLPHVHYGFPDLVLWKPRGRAGVSR
GDRGGRNWRTGEFG
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mRNA from alignment at M-pyrifera_M_contig13347:352..3513+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13347.5926.1 ID=mRNA_M-pyrifera_M_contig13347.5926.1|Name=mRNA_M-pyrifera_M_contig13347.5926.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3162bp|location=Sequence derived from alignment at M-pyrifera_M_contig13347:352..3513+ (Macrocystis pyrifera P11B4 male)
ATGCACTTCTGCGCGCGCAGGAAAGGCTTACGGAAGCGCCTCAATGATAT
CGCCGGTGCTACCGACGAGCGCCTGTGGCTGGACGTCGACCACCGCTACG
AAAGGTTGGAAGCGCTCGGACCCCTCGGGAAAGGTTGATTCTTCCGGCGT
GGTCTCTGTTCCACACCACACCCACACTGCGATTGATTTTCTGCCAATAC
TGTACCAGCTGTAGATCATAACGTGGCGCTGGGTGTACGAGGATGTGTAG
GATGTGCATGCTTTAGTACTTATCCAACCCAGGAAACATGGAAACATGGA
AACATGGAAACATGGAAACATGGAAACATGGAAACATGGAAACATGGAAA
CATGGAAACATGGAAACATGGAAACATGGAAACATGGAGTGCTAGAGTGT
GCAGAATATACGGGTCCCACCCGGCAACATGGACAACGTAGATCATACTG
CTGTAGATGGGGAACTTACCTGCCTTGAACGATCTAGATCATCAACTGGG
AGTCGATGGTCTGTCCGAAACGCTCTCTGATCTGCTCTCAGCTTAGCGAG
ATGCTGAACGATGGAGTGCTTTGTTTTTTGTTTTGTTTTTTCAAGCAGAC
CGAGTACGTAGCCAGGTGACACAGCCGCCTAACAAGTGAGTTTCACACCT
ACCAGGTTTTGTTCCCCTTAAAAAGGAACCCCAGATATGTTTTTTTTGTA
CGTAGCCTTTGTGAGGTTCTATAAAAACCCATGCGATCGAATTGTCACTA
TGACGGGAGACTAAAGCAAATAGGACCTACGTTATACACAAAAACCTACC
TATTTTCCTATTTTTACTATTAATAACAATATTTGGTCCTATTTACTTTC
GTCCCTCGTAATAGTTACTTTACCCACACGCAGCTTTTGCAACGATGAGT
TTCGGCGAGATCGTTCATCTCACAACTTACGCCTTTAAGAAACAAACTAT
TATGTTTAAAGCATTGAGCATCCTTCAATAGGTCATGCCTTGAAGCCATA
CATTTTGATTGGATAAAGCCATCTATCCTATAGAAAATATGAAGGTGGAC
ATCCTATACCAGGCACACATGTAGGTATCTGCACCGTCCAGCCGAAGACT
CCGTTTTTTTTCCTCCTTATATGCCTTCTACCAGCGCACAAATTCGAAGA
CACGTATATACAAATACAGTATCCCTGCTTTTTCATGGCAAGTCCCGACC
AGCAGGTCGGGTCTAGATGTTTTTGAAAATTCACGGATCGGGTCGGGTCT
GGTCGGGTCGGGTCTAGTGGGGCCGGTTCAGGAGGTTTTCAAATTGTCAC
GGGTCGGCTCGGGTCACCCTTACCCGACCGTTGAACATCCCAGAAAGTAC
ACACCAACGCGAGTTCATACTTAACCACAGGATTAAGGCATGCCCTAAGT
TGCTCCCTCCCCTCTTCGCTCAGCACGCGCTAGCACTCTGATACAGTAGT
ACGTAGTGCTCGTTTACCCCGCCTCGTATTGCTCATTTATAGACCAAAGT
CGATGTCATGCCGCCTCCCACTCCCTATCCGTTCGCTGCTACCGTGATCC
GCGTATCGGCAGGTACAAGGGTGTGCGAAGTGCCTGGTGCAACTGGCGGC
GGTTCTCGAAGCAGCAGGTGAAAAGCTTTTTCGCATTTTCCGATGTGGGA
CGCTCGACTTTTATTTTTCGCGCTGCTTGCCTCGACTTGTTTTGCCGTGT
TTCACCGCCGGTAAATTGTTGACGAGAGTGATACGTGATGAGTGATGAGA
GGTGGTTGGTTTCATTTAGTCGCCGTGCGATGGTGCGATGCGGGCACTTT
TCAAAAACCCGCGCACCGAAAACTGGCGGTACAACAGTAGACTGCCACGA
CACAGCGCAGACTGCAGTGATGTTGACGACGATGATGGTAGTGATGATGA
TGGTAGTGATGATGAGAACGACGATATTTTTGACAAGGGCCAATTCCCCT
GAAATTGTTCGAACCTCCTTTCGGCCTGGTACTGCATCCAGGGTTAGTAG
ATGCATTGTTGATAGCATGCTACTACTGTTGAACGAACAGTCTAGGGCTG
TCGCAGTTTCTGTTTTTCTTGCTGGATAGCTCTAGGCCACCGTCTCGAAA
CGCGTACGCTGATGACCCGAAACGCCTGCTTGCTTTCTCGCAGGCTTTGG
AGATATCCGTCTCTTTCGGCGGTCGAACGTTGTCCAGGGTGTTGACAATG
CTCACGACGGACCTACCGCACGTGTGAGTACGTCGACTACGTAGCCCGCA
AAAGCGACAGACCGCGTGGGTGTAGCAAAACGCCTCAGGTTATGAACAGA
ATTTCACACGAAAAAAACGGGTGGGCATGCTTCGAAATCTACTTTGCTGG
TTTGCAGGTATCGAGCCGAAACAACGGACGGGTATGCTCCATAGCTTTTA
CTTTTGTGTTATTGCCTGCTCGCTTGCTTAATTAAGACTGTGCGTGAGGG
GTCTGTGCAGAGTTGCAGTAGCAGTAGCATAGTTTTGTGCAGGGCATAAG
GTAGCAGTAGCAGTAGCTGGCGCGTCTTAGCGGTCTGAATTGATTTTTGC
CGCAACAGCCACCGAAGGCCGTGGACGGCTCGCCGCAACTTGAGTTTGGC
AGCCTCAAGCAGTGTATGTGGGCGTCTACCTCGTCGGAGGCTTATGAAGT
GAAGTTAACACACTTCTTTGCATGTTTTCGAAGTTCGGCAGACGTCTCGA
AACGCAACTGCTGTTTCATGTGGTGTCCAGACGTAAAATATTCAAGCATA
CCGTGTATCGCAATTTGGTTACTCCGGCGACCCGTTGGCCGGGTGCGGCT
TCCCCTTGCCCTCCCTCCCTCCGGATGCCCTTCGGGGGGGTGCCGCAACA
TGGCTTTCGGCGCCTGTCGTGCTTTACGCACCACGCGAAATATGATGAAA
TGCTCAATTATAACCCTGGTGTTGTGTCCCTGGTACGCATTGGGTTTGGC
ACCGCGCTGAGAGAGAGGGTCCACGGGGTAGCCTCGCAATGTATTGCCCC
CCCCCCCACCTGCTTGTTCCAGCGTCAAGCTTGAGTCAAACCTCCGTGCT
CTTTCGCAGGCACTACGGTTTCCCCGATCTGGTTTTGTGGAAACCCAGGG
GACGGGCAGGCGTTTCTCGAGGGGATAGGGGCGGAAGAAACTGGCGCACC
GGGGAGTTTGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13347:352..3513+

>mRNA_M-pyrifera_M_contig13347.5926.1 ID=mRNA_M-pyrifera_M_contig13347.5926.1|Name=mRNA_M-pyrifera_M_contig13347.5926.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig13347:352..3513+ (Macrocystis pyrifera P11B4 male)
ATGCACTTCTGCGCGCGCAGGAAAGGCTTACGGAAGCGCCTCAATGATAT
CGCCGGTGCTACCGACGAGCGCCTGTGGCTGGACGTCGACCACCGCTACG
AAAGATGCACTTCTGCGCGCGCAGGAAAGGCTTACGGAAGCGCCTCAATG
ATATCGCCGGTGCTACCGACGAGCGCCTGTGGCTGGACGTCGACCACCGC
TACGAAAGGTACAAGGGTGTGCGAAGTGCCTGGTGCAACTGGCGGCGGTT
CTCGAAGCAGCAGGTACAAGGGTGTGCGAAGTGCCTGGTGCAACTGGCGG
CGGTTCTCGAAGCAGCAGGCTTTGGAGATATCCGTCTCTTTCGGCGGTCG
AACGTTGTCCAGGGTGTTGACAATGCTCACGACGGACCTACCGCACGTGC
TTTGGAGATATCCGTCTCTTTCGGCGGTCGAACGTTGTCCAGGGTGTTGA
CAATGCTCACGACGGACCTACCGCACGTGCACTACGGTTTCCCCGATCTG
GTTTTGTGGAAACCCAGGGGACGGGCAGGCGTTTCTCGAGGGGATAGGGG
CGGAAGAAACTGGCGCACCGGGGAGTTTGGAGCACTACGGTTTCCCCGAT
CTGGTTTTGTGGAAACCCAGGGGACGGGCAGGCGTTTCTCGAGGGGATAG
GGGCGGAAGAAACTGGCGCACCGGGGAGTTTGGA
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