mRNA_M-pyrifera_M_contig13339.5923.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13339.5923.1
Unique NamemRNA_M-pyrifera_M_contig13339.5923.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13339.5923.1 vs. uniprot
Match: D8LEK4_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK4_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 2.320e-65
Identity = 100/127 (78.74%), Postives = 114/127 (89.76%), Query Frame = 1 
Query:    1 RWADAAKKTRAERPLYTAKPPPGMKTHNEAEWKAWHYGVGATQKEAFVQESSWLDMDENRHQDYFRRQEKREKAVFGVGRGHKFNASRARHGVIERVRLRREERLERDRTRRTAAENATTDAVCSVS 381
            RWADAAKKT+A++PLYTAKPPPGMK HNE EWKAWHYGV A QKEAFVQE++WLD++ NRHQ YFRRQEK+EKA++GVGRGHKFNASR RH VIERVRLRREERL+RDR+RR A +NA  D VCS+S
Sbjct:   79 RWADAAKKTKAQQPLYTAKPPPGMKIHNEGEWKAWHYGVDAVQKEAFVQEANWLDLEGNRHQAYFRRQEKKEKAMYGVGRGHKFNASRQRHDVIERVRLRREERLKRDRSRRPAEDNAAADDVCSIS 205
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13339.5923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEK4_ECTSI2.320e-6578.74Heat shock protein 40 like protein/ DnaJ domain co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13339contigM-pyrifera_M_contig13339:185..1213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue3.1e-52
Seed eggNOG ortholog2880.D8LEK4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0715@2759
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-23_002700.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.2799242-CDS-M-pyrifera_M_contig13339:184..3301622815814.2799242-CDS-M-pyrifera_M_contig13339:184..330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13339 185..330 +
1692277583.8478317-CDS-M-pyrifera_M_contig13339:184..3301692277583.8478317-CDS-M-pyrifera_M_contig13339:184..330Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13339 185..330 +
1622815814.2947302-CDS-M-pyrifera_M_contig13339:975..12131622815814.2947302-CDS-M-pyrifera_M_contig13339:975..1213Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13339 976..1213 +
1692277583.859628-CDS-M-pyrifera_M_contig13339:975..12131692277583.859628-CDS-M-pyrifera_M_contig13339:975..1213Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13339 976..1213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13339.5923.1prot_M-pyrifera_M_contig13339.5923.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13339 185..1213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13339.5923.1

>prot_M-pyrifera_M_contig13339.5923.1 ID=prot_M-pyrifera_M_contig13339.5923.1|Name=mRNA_M-pyrifera_M_contig13339.5923.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
RWADAAKKTRAERPLYTAKPPPGMKTHNEAEWKAWHYGVGATQKEAFVQE
SSWLDMDENRHQDYFRRQEKREKAVFGVGRGHKFNASRARHGVIERVRLR
REERLERDRTRRTAAENATTDAVCSVS*
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mRNA from alignment at M-pyrifera_M_contig13339:185..1213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13339.5923.1 ID=mRNA_M-pyrifera_M_contig13339.5923.1|Name=mRNA_M-pyrifera_M_contig13339.5923.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at M-pyrifera_M_contig13339:185..1213+ (Macrocystis pyrifera P11B4 male)
AGATGGGCGGATGCGGCGAAAAAAACCCGGGCAGAAAGGCCTCTGTACAC
AGCGAAACCGCCACCCGGTATGAAAACGCACAACGAAGCCGAGTGGAAAG
CCTGGCACTACGGGGTGGGCGCCACGCAGAAAGAGGCGTTCGTACAGTGA
GTGATTTGCTGTGTCGTGTTGGGGCGCGGGCGGGGATGTGCTGTGTGATG
CTAAGGGGGGGGCAGGGAGGGGGGTTGGGGGGGCATGTGCTTTGCTGTGT
GGTTGCGGGGCTTGAGAGGGAAGGAGGGGGAAGGGGTTGTAGGTGATGGT
GGGATGGGGACAGGGGGGGAAGGGGGTGTACTCACGTCGCGCATGGCCGT
AGTCGTACGAACATAGACCCGCGCATCCCTACAATGCGGGGACGGAGCAC
GTCGAGTTTTCACCGACCAGACAGTCATTGCTTGCACCAAGGGAGGGGGG
GGCTTTGTTGTGTGATGGTGGGGAAGGGAGCAGAAGCGAAAAGTCCACAC
GTTGTTGTATTTTCGGGTTCACGAGATCGTGTTGGATCACGCCCGGCCCC
GCCTCTCCCCTTTTCGATAGCGGCGGAAAATGTTCCGATGTGGTATCCCA
ACAGAGTATATTGTTTCCGAATGGCTTTCGGATATATAACATAGTTCGGT
GTATCCACGCCGTAAGCGGCCATAAGCCCCCCCCCCTATCCGACGAAGGG
ATGCGTGGTCAATAGTCAAACGACTAAGGCAAGCAATTAATGAGTACGCC
CCCCCCCCCCTACCCGACGCGCGGCGGTGCACGTGTGGCAGGGAGTCTAG
CTGGTTGGACATGGACGAGAACAGACACCAGGACTACTTCCGAAGACAGG
AGAAGAGGGAGAAGGCCGTGTTCGGCGTTGGGAGGGGCCACAAGTTCAAC
GCGTCCCGCGCAAGGCACGGCGTGATCGAGCGCGTCCGGCTGCGTCGGGA
GGAGCGGTTGGAGCGCGACAGGACGAGAAGGACGGCGGCGGAGAACGCGA
CGACGGACGCCGTTTGTTCTGTCTCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13339:185..1213+

>mRNA_M-pyrifera_M_contig13339.5923.1 ID=mRNA_M-pyrifera_M_contig13339.5923.1|Name=mRNA_M-pyrifera_M_contig13339.5923.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig13339:185..1213+ (Macrocystis pyrifera P11B4 male)
AGATGGGCGGATGCGGCGAAAAAAACCCGGGCAGAAAGGCCTCTGTACAC
AGCGAAACCGCCACCCGGTATGAAAACGCACAACGAAGCCGAGTGGAAAG
CCTGGCACTACGGGGTGGGCGCCACGCAGAAAGAGGCGTTCGTACAAGAT
GGGCGGATGCGGCGAAAAAAACCCGGGCAGAAAGGCCTCTGTACACAGCG
AAACCGCCACCCGGTATGAAAACGCACAACGAAGCCGAGTGGAAAGCCTG
GCACTACGGGGTGGGCGCCACGCAGAAAGAGGCGTTCGTACAGGAGTCTA
GCTGGTTGGACATGGACGAGAACAGACACCAGGACTACTTCCGAAGACAG
GAGAAGAGGGAGAAGGCCGTGTTCGGCGTTGGGAGGGGCCACAAGTTCAA
CGCGTCCCGCGCAAGGCACGGCGTGATCGAGCGCGTCCGGCTGCGTCGGG
AGGAGCGGTTGGAGCGCGACAGGACGAGAAGGACGGCGGCGGAGAACGCG
ACGACGGACGCCGTTTGTTCTGTCTCCTGAGGAGTCTAGCTGGTTGGACA
TGGACGAGAACAGACACCAGGACTACTTCCGAAGACAGGAGAAGAGGGAG
AAGGCCGTGTTCGGCGTTGGGAGGGGCCACAAGTTCAACGCGTCCCGCGC
AAGGCACGGCGTGATCGAGCGCGTCCGGCTGCGTCGGGAGGAGCGGTTGG
AGCGCGACAGGACGAGAAGGACGGCGGCGGAGAACGCGACGACGGACGCC
GTTTGTTCTGTCTCCTGA
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