mRNA_M-pyrifera_M_contig13330.5918.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13330.5918.1
Unique NamemRNA_M-pyrifera_M_contig13330.5918.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13330.5918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13330contigM-pyrifera_M_contig13330:247..464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size218
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.9911509-CDS-M-pyrifera_M_contig13330:246..4141622815813.9911509-CDS-M-pyrifera_M_contig13330:246..414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13330 247..414 -
1692277583.6556268-CDS-M-pyrifera_M_contig13330:246..4141692277583.6556268-CDS-M-pyrifera_M_contig13330:246..414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13330 247..414 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815814.0031798-UTR-M-pyrifera_M_contig13330:414..4641622815814.0031798-UTR-M-pyrifera_M_contig13330:414..464Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13330 415..464 -
1692277583.6657126-UTR-M-pyrifera_M_contig13330:414..4641692277583.6657126-UTR-M-pyrifera_M_contig13330:414..464Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13330 415..464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13330.5918.1prot_M-pyrifera_M_contig13330.5918.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13330 247..414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13330.5918.1

>prot_M-pyrifera_M_contig13330.5918.1 ID=prot_M-pyrifera_M_contig13330.5918.1|Name=mRNA_M-pyrifera_M_contig13330.5918.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
MMYSMKSHVDIKHASAAKLRSKDSDGQQVLASIVVSEVEKKGVGAMLKND
LKHRGG
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mRNA from alignment at M-pyrifera_M_contig13330:247..464-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13330.5918.1 ID=mRNA_M-pyrifera_M_contig13330.5918.1|Name=mRNA_M-pyrifera_M_contig13330.5918.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=218bp|location=Sequence derived from alignment at M-pyrifera_M_contig13330:247..464- (Macrocystis pyrifera P11B4 male)
CCGTGTACAAATGCGCCACTGAAGTGCAAATTCTGTCCTGACCATCGGGA
ATGATGTACTCTATGAAAAGCCACGTGGACATCAAGCACGCCTCAGCCGC
GAAGCTGAGGAGCAAGGACTCGGACGGTCAACAGGTTCTTGCGAGTATTG
TTGTCAGCGAAGTTGAAAAGAAAGGCGTCGGCGCAATGTTGAAAAATGAT
CTTAAACATAGGGGTGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13330:247..464-

>mRNA_M-pyrifera_M_contig13330.5918.1 ID=mRNA_M-pyrifera_M_contig13330.5918.1|Name=mRNA_M-pyrifera_M_contig13330.5918.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig13330:247..464- (Macrocystis pyrifera P11B4 male)
ATGATGTACTCTATGAAAAGCCACGTGGACATCAAGCACGCCTCAGCCGC
GAAGCTGAGGAGCAAGGACTCGGACGGTCAACAGGTTCTTGCGAGTATTG
TTGTCAGCGAAGTTGAAAAGAAAGGCGTCGGCGCAATGTTGAAAAATGAT
CTTAAACATAGGGGTGGAATGATGTACTCTATGAAAAGCCACGTGGACAT
CAAGCACGCCTCAGCCGCGAAGCTGAGGAGCAAGGACTCGGACGGTCAAC
AGGTTCTTGCGAGTATTGTTGTCAGCGAAGTTGAAAAGAAAGGCGTCGGC
GCAATGTTGAAAAATGATCTTAAACATAGGGGTGGA
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