mRNA_M-pyrifera_M_contig1333.5917.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1333.5917.1
Unique NamemRNA_M-pyrifera_M_contig1333.5917.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1333.5917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1333contigM-pyrifera_M_contig1333:26968..27491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size524
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1333.5917.1prot_M-pyrifera_M_contig1333.5917.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1333 26988..27353 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.6529622-UTR-M-pyrifera_M_contig1333:26967..269871622815813.6529622-UTR-M-pyrifera_M_contig1333:26967..26987Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1333 26968..26987 +
1692277583.4279892-UTR-M-pyrifera_M_contig1333:26967..269871692277583.4279892-UTR-M-pyrifera_M_contig1333:26967..26987Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1333 26968..26987 +
1622815813.6832998-UTR-M-pyrifera_M_contig1333:27353..274911622815813.6832998-UTR-M-pyrifera_M_contig1333:27353..27491Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1333 27354..27491 +
1692277583.446413-UTR-M-pyrifera_M_contig1333:27353..274911692277583.446413-UTR-M-pyrifera_M_contig1333:27353..27491Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1333 27354..27491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.6683795-CDS-M-pyrifera_M_contig1333:26987..273531622815813.6683795-CDS-M-pyrifera_M_contig1333:26987..27353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1333 26988..27353 +
1692277583.437151-CDS-M-pyrifera_M_contig1333:26987..273531692277583.437151-CDS-M-pyrifera_M_contig1333:26987..27353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1333 26988..27353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1333.5917.1

>prot_M-pyrifera_M_contig1333.5917.1 ID=prot_M-pyrifera_M_contig1333.5917.1|Name=mRNA_M-pyrifera_M_contig1333.5917.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MHAEKTKEREAVELRPFRAKSHEGAGMPDLLTTLTMKPKLVTFTTQPRLD
GQRSRLADTLPEALRAVLLFFTKSSQPVHSIINRATVTWVVELSRSSRYG
SIHRKITSAHSQCCLYVHQLK*
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mRNA from alignment at M-pyrifera_M_contig1333:26968..27491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1333.5917.1 ID=mRNA_M-pyrifera_M_contig1333.5917.1|Name=mRNA_M-pyrifera_M_contig1333.5917.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=524bp|location=Sequence derived from alignment at M-pyrifera_M_contig1333:26968..27491+ (Macrocystis pyrifera P11B4 male)
AGGTATTGCCATTGCCACCCATGCATGCCGAAAAAACAAAAGAAAGAGAA
GCAGTGGAACTCCGCCCGTTTCGTGCCAAAAGCCACGAGGGAGCAGGTAT
GCCTGATTTATTGACAACATTAACGATGAAGCCCAAGCTTGTTACTTTTA
CGACGCAGCCACGTCTCGACGGACAGCGTTCACGCCTCGCCGACACCCTC
CCCGAAGCACTTAGAGCAGTGCTTTTATTTTTCACCAAAAGCTCGCAGCC
CGTACACAGCATTATCAACAGGGCCACCGTCACTTGGGTAGTGGAGCTTT
CACGATCCAGCAGGTATGGATCAATTCACCGAAAAATTACGAGTGCACAC
TCACAATGCTGTCTCTATGTCCACCAACTGAAATAACTGATATCTACTGT
AGATAAGGGGCCACTGATAAATCAGGCCGGGTGGCAGCCTACTGCAAGAG
CCGAATCAGCGATTGGCTGCTGAAACATCCACCCAAACGAAATAAGGCAT
AAAAACACGCGGCCAACCAGACCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1333:26968..27491+

>mRNA_M-pyrifera_M_contig1333.5917.1 ID=mRNA_M-pyrifera_M_contig1333.5917.1|Name=mRNA_M-pyrifera_M_contig1333.5917.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig1333:26968..27491+ (Macrocystis pyrifera P11B4 male)
ATGCATGCCGAAAAAACAAAAGAAAGAGAAGCAGTGGAACTCCGCCCGTT
TCGTGCCAAAAGCCACGAGGGAGCAGGTATGCCTGATTTATTGACAACAT
TAACGATGAAGCCCAAGCTTGTTACTTTTACGACGCAGCCACGTCTCGAC
GGACAGCGTTCACGCCTCGCCGACACCCTCCCCGAAGCACTTAGAGCAGT
GCTTTTATTTTTCACCAAAAGCTCGCAGCCCGTACACAGCATTATCAACA
GGGCCACCGTCACTTGGGTAGTGGAGCTTTCACGATCCAGCAGGTATGGA
TCAATTCACCGAAAAATTACGAGTGCACACTCACAATGCTGTCTCTATGT
CCACCAACTGAAATAAATGCATGCCGAAAAAACAAAAGAAAGAGAAGCAG
TGGAACTCCGCCCGTTTCGTGCCAAAAGCCACGAGGGAGCAGGTATGCCT
GATTTATTGACAACATTAACGATGAAGCCCAAGCTTGTTACTTTTACGAC
GCAGCCACGTCTCGACGGACAGCGTTCACGCCTCGCCGACACCCTCCCCG
AAGCACTTAGAGCAGTGCTTTTATTTTTCACCAAAAGCTCGCAGCCCGTA
CACAGCATTATCAACAGGGCCACCGTCACTTGGGTAGTGGAGCTTTCACG
ATCCAGCAGGTATGGATCAATTCACCGAAAAATTACGAGTGCACACTCAC
AATGCTGTCTCTATGTCCACCAACTGAAATAA
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