mRNA_M-pyrifera_M_contig13252.5895.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig13252.5895.1 vs. uniprot
Match: D7G3B8_ECTSI (DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B8_ECTSI) HSP 1 Score: 522 bits (1345), Expect = 3.580e-170 Identity = 315/516 (61.05%), Postives = 357/516 (69.19%), Query Frame = 1
Query: 1 RYSRSKQIVLCMDADAAGQRAVERLCESPASSGLDSLSESGVSMSVATIPEGSGCKDPADYLQAHGAEAFRAEVIDKAVPWSDWHGDRILAEHDFTSDANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFARALAGGDEAMRHQLEFDLMAMCNEKRARKNALRRRVTSPSVSQPHPQPTPSTLENPGMMKKREESRLKRTKFGGKGSAIWSPAKGEVWGG---EGQTMDPALRSRILEQAQRFLLALVVHDPSRRASCAEEAKRRGLYLGSERRQWLFDAVTSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA------EALEAGGEMLFAEIRAAAPPGYFGLKGRARPHGD----RDGRGEGEGTLDWVFERKEAVRVAKGGNVDLVLLEVVMVMLKEKAATSVHSLSLELAGISNDIARTMAEAAAXXXXXXXXXXXXXXXTQPLLPEELSARGVGRSRAEAQKE------VDRLKARQSELFELIQLKRE-VMFIEAHARAWGQACARAR 1488
RY++SK+++LCMD DAAG+RAVERLCESPASSGLDSLSE+GVS+SVATIPE GCKDPAD+LQAHGAE FRA+V+ KAVPWSDW+GD ILA+HDF DANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFA+ALAGG+EAMRHQLEFDLM M NEKRARKNALRRR + S S GM KKREESRLKR K+G K IWSP+ + +GG E + + ALR RIL+QAQRFLLALVVHDPSRRA C EE R GLYLG ERRQWLF+A+T++ XXXXXXXX A EALEAGG++LFAE+RAAAP GYF L+G+A G D GE E TLDWVFER EA RVAKG N DLVLLEVVMVMLKE+AA +HSLSLELA SN IARTMAEAA + E G+ V+RLK RQSELFE+IQ +RE V EA +A+ + R
Sbjct: 564 RYTKSKRVILCMDGDAAGRRAVERLCESPASSGLDSLSEAGVSVSVATIPEDPGCKDPADFLQAHGAEEFRAKVMGKAVPWSDWYGDSILADHDFAGDANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFAKALAGGNEAMRHQLEFDLMNMSNEKRARKNALRRRSGHYTGSWNAGVNAGSAPPAQGM-KKREESRLKREKYGSKRMTIWSPSMEQEYGGGSEESKATELALRGRILDQAQRFLLALVVHDPSRRAKCLEEVSRHGLYLGGERRQWLFNALTASVSPDPALPSAAGXXXXXXXXQDGAGRDSPPAWGGPTPEALEAGGDVLFAEVRAAAPGGYFALRGKAAGKGGGGVGADDEGEKEDTLDWVFERAEAERVAKGANTDLVLLEVVMVMLKEQAAAKMHSLSLELADTSNAIARTMAEAATADFLALDPPQASGEPPETATAPESPGVAAGKXXXXXXXXXXXXXXVERLKVRQSELFEMIQEQREEVTEFEARRKAFTNRLPKVR 1078
BLAST of mRNA_M-pyrifera_M_contig13252.5895.1 vs. uniprot
Match: A0A6H5K157_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K157_9PHAE) HSP 1 Score: 515 bits (1326), Expect = 6.800e-167 Identity = 326/583 (55.92%), Postives = 369/583 (63.29%), Query Frame = 1
Query: 1 RYSRSKQIVLCMDADAAGQRAVERLCESPASSGLDSLSESGVSMSVATIPEGSGCKDPADYLQAHGAEAFRAEVIDKAVPWSDWHGDRILAEHDFTSDANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFARALAGGDEAMRHQLEFDLMAMCNEKRARKNALRRR-----------VTSPSVSQPHPQPTP-----------------------------STLEN-----------PGM-----------------MKKREESRLKRTKFGGKGSAIWSPAKGEVWGG---EGQTMDPALRSRILEQAQRFLLALVVHDPSRRASCAEEAKRRGLYLGSERRQWLFDAVTSA-----AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEALEAGGEMLFAEIRAAAPPGYFGLKGRARPHGD----RDGRGEGEGTLDWVFERKEAVRVAKGGNVDLVLLEVVMVMLKEKAATSVHSLSLELAGISNDIARTMAEAA-AXXXXXXXXXXXXXXXTQPLLPEE-----LSARGVGRSRAEAQKEVDRLKARQSELFELIQLKRE-VMFIEAHARAWGQACARAR 1488
RY++SK+++LCMD DAAG+RAVERLCESPASSGLDSLSE+GVS+SVATIPE SGCKDPAD+LQAHGAE FRA+V+DKAVPWS W+GD ILA+HDF SDANAFRRCTDRL GFMSDLSIPTDQTFHVHRFA+ALAGG+EAMRHQLEFDLM M NEKRARKNALRRR V + S Q S N GM MKKREESRLKR K+G K IWSP+ + +GG E + + ALR RIL+QAQRFLLALVVHDPSRRA C EE R GL LG ERRQWLF+A+T++ A XXXX EALEAGG++LFAE+RAAAP GYF L+G+A G D E E TLDWVFER EA RVAKG N DLVLLEVVMVMLKE+AA +HSLSLELA SN IARTMAEAA A PE + +GVGRSRAEAQ EV RLK RQSELFE+IQ +RE V +EA +A+ + + R
Sbjct: 398 RYTKSKRVILCMDGDAAGRRAVERLCESPASSGLDSLSEAGVSVSVATIPEDSGCKDPADFLQAHGAEEFRAKVMDKAVPWSVWYGDSILADHDFASDANAFRRCTDRLAGFMSDLSIPTDQTFHVHRFAKALAGGNEAMRHQLEFDLMNMSNEKRARKNALRRRSGHYTGSWNAGVNAGSAPPAQGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAAVNGAGGGGYLTGTEGMEGVDVVRDHSWVMERVRMKKREESRLKREKYGSKRMTIWSPSMEQEYGGGSEESKGTELALRGRILDQAQRFLLALVVHDPSRRAKCLEEVSRHGLSLGGERRQWLFNALTASVSPDPALRSAAAXXXXGDEPDGVGCDSPPGWGGPTPEALEAGGDVLFAEVRAAAPGGYFALRGKAAGKGGGGVGADDEREREDTLDWVFERAEAERVAKGANTDLVLLEVVMVMLKEQAAAKMHSLSLELADTSNAIARTMAEAATADFLALDPPHASAEPPKTAAAPESPGVAAVKGQGVGRSRAEAQAEVQRLKVRQSELFEMIQEQREEVTELEARRKAFTKRLPKVR 980
BLAST of mRNA_M-pyrifera_M_contig13252.5895.1 vs. uniprot
Match: A0A835YIS2_9STRA (Toprim domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS2_9STRA) HSP 1 Score: 138 bits (348), Expect = 5.330e-32 Identity = 74/152 (48.68%), Postives = 99/152 (65.13%), Query Frame = 1
Query: 1 RYSRSKQIVLCMDADAAGQRAVERLCESPASSGLDSLSESGVSMSVATIPEGS-GCKDPADYLQAHGAEAFRAEVIDKAVPWSDWHGDRILAEHDFTSDANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFARALAGGDEAMRHQLEFDLMAM 453
R+SR +++VLCMDADAAG +AVERLCE A L+ + +G+ + VA I + GCKDP+D++ A PW+ W+ DR+LA HD DA AFR C D+LT F+S L+ P D+T HV+R A AL+G + A+R QLE DLMAM
Sbjct: 346 RHSRGRRVVLCMDADAAGAKAVERLCEGGA---LEEAAANGIEVRVADIAAAAPGCKDPSDFVAEAAAAXXXXAGKGGKAPWTVWYTDRVLAAHDHGGDAAAFRACVDKLTTFLSALADPADRTNHVYRVAAALSGDNLALRLQLEADLMAM 494
BLAST of mRNA_M-pyrifera_M_contig13252.5895.1 vs. uniprot
Match: A0A7R9U1P3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1P3_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.370e-12 Identity = 60/175 (34.29%), Postives = 86/175 (49.14%), Query Frame = 1
Query: 1 RYSRSKQIVLCMDADAAGQRAVERLCESPASSGLDSLSESGVSMSVATIPEGSGCKDPADYLQA-HGAEAFRAEVIDKAVPWSDWHGDRILAEHDFTSDAN-----------------------AFRRCTDRLTGFMSDLSIPTDQTFHVHRFARALAGGDEAMRHQLEFDLMAM 453
R S SK+I +C+DADAAGQRA +RLC L L GV V + G KDP+D+LQ H F + AVP+SD++ +R++ F +DA+ AF R L+ F++ L D+TF +R A A+A +E MR LE D++ +
Sbjct: 25 RASPSKRITVCLDADAAGQRATDRLCAEI----LPDLIAEGVDAYVGRLD---GAKDPSDWLQGGHVGSEFVDMIRSNAVPFSDFYIERLIKR--FRADASPKDPTTNEADTLATAAQVANDQLAFHRLVSDLSDFLARLPTAADRTFAAYRTAAAVAPDNEGMRIALEADILQL 190
BLAST of mRNA_M-pyrifera_M_contig13252.5895.1 vs. uniprot
Match: A0A7S4M4Z8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M4Z8_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.620e-12 Identity = 45/84 (53.57%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 25 VLCMDADAAGQRAVERLCESPASSGLDSLSES---GVSMSVATIPEGSGCKDPADYLQAHGAEAFRAEVIDKAVPWSDWHGDRI 267
+LCMD D AGQ A ERLC SSG+ S E GV + VA++PE G KDPADY+ AHG EAFR +V+ +A PW W+ RI
Sbjct: 40 ILCMDNDDAGQAATERLC----SSGMISTLEGRRIGVEVYVASLPE--GIKDPADYVTAHGGEAFRRDVLGRASPWRGWYVRRI 117
BLAST of mRNA_M-pyrifera_M_contig13252.5895.1 vs. uniprot
Match: A0A1H2R2V1_9BACL (DNA primase n=1 Tax=Marininema mesophilum TaxID=1048340 RepID=A0A1H2R2V1_9BACL) HSP 1 Score: 71.6 bits (174), Expect = 1.530e-9 Identity = 40/139 (28.78%), Postives = 79/139 (56.83%), Query Frame = 1
Query: 13 SKQIVLCMDADAAGQRAVERLCESPASSGLDSLSESGVSMSVATIPEGSGCKDPADYLQAHGAEAFRAEVIDKAVPWSDWHGDRILAEHDFTSDANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFARALAGGDEAMRHQ 429
++++++C DAD+AG+ A +R G+D L + G + VA +P+G DP DY+Q GA+AFR+EVI +AVP++ + + + ++D DA+ ++ G ++DL ++ ++ R + +A++ +
Sbjct: 304 TEEVIICYDADSAGESATDR--------GMDVLKQEGCIVKVARMPKG---MDPDDYIQERGADAFRSEVIAQAVPFTAFKLESLKKDYDLR-DADGRMSYLNQAVGVIADLPRAIEKDHYLRRLSEEFHVSLDALKQE 430
BLAST of mRNA_M-pyrifera_M_contig13252.5895.1 vs. uniprot
Match: A0A7S2UJ00_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ00_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.790e-8 Identity = 39/125 (31.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 178 DYLQAHGAEAFRAEVIDKAVPWSDWHGDRILAEHDF---TSDANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFARALA-----------GGDEAMRHQLEFDLMAMCNEKRARKNALRRRVTSPS 510
+++ H EAF+ +++D A+PWSDW+ +RI++ D + +++F + + ++ F+S S P D+T + A L+ GG +R QLE DL+ M + K + AL RRV S
Sbjct: 1 EFVDEHDGEAFQ-QILDTAIPWSDWYMERIVSVCDLDATSGSSDSFPQVCEAVSDFLSSFSNPADRTKRAYEAAGTLSKLLAPNRTDSVGG---LRIQLETDLLDMASRKARTREALSRRVEESS 121
BLAST of mRNA_M-pyrifera_M_contig13252.5895.1 vs. uniprot
Match: A0A1I2KRA0_9BACL (DNA primase n=3 Tax=Planifilum TaxID=332100 RepID=A0A1I2KRA0_9BACL) HSP 1 Score: 66.6 bits (161), Expect = 5.830e-8 Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 1
Query: 13 SKQIVLCMDADAAGQRAVERLCESPASSGLDSLSESGVSMSVATIPEGSGCKDPADYLQAHGAEAFRAEVIDKAVPWSDWHGDRILAEHDFTSDANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFA 390
++ +V+C DAD AGQ A +R GLD L + G + VA +P G DP D+L+ GAEAFR E++ +A+P + + + + + + + T R +SDLS+ ++ ++ R A
Sbjct: 303 AENVVICYDADDAGQAAADR--------GLDLLKDQGCLVKVAQMPPG---MDPDDFLRKRGAEAFREEILAEALPLPAFKLEYLKKDFNLQDEGERMKYLT-RALDVISDLSLAIERDHYLRRLA 416
BLAST of mRNA_M-pyrifera_M_contig13252.5895.1 vs. uniprot
Match: A0A1Z5KNR9_FISSO (Toprim domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNR9_FISSO) HSP 1 Score: 64.7 bits (156), Expect = 2.860e-7 Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 1
Query: 4 YSRSKQIVLCMDADAAGQRAVERLCESPASSGLDSLSESGVSMSVATIPEGSGCKDPADYLQAHG---------AEAFRAEVIDKAVPWSDWHGDRILAEHDFTSDANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFARALA 402
+ + +Q+V C+D DAAG RA+ER+C++ + L S + VAT+P G KDP +Y+ A F A V+ AV W W+ R++ + T+ A+ R DR+ F S P + + + A+ LA
Sbjct: 258 HEQQRQLVFCLDNDAAGVRAMERICQNGFLTALQKQYPSAF-VKVATMPI--GIKDPGEYVDERFLAKMMPEKIAAEFEANVVTPAVDWRLWYTQRVILSCNCTTTAD-LRLTIDRVAAFWSISMSPEQRQENAPQLAKQLA 395
BLAST of mRNA_M-pyrifera_M_contig13252.5895.1 vs. uniprot
Match: A0A7X6SUV3_9BURK (DNA primase n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A7X6SUV3_9BURK) HSP 1 Score: 63.5 bits (153), Expect = 4.800e-7 Identity = 40/141 (28.37%), Postives = 76/141 (53.90%), Query Frame = 1
Query: 13 SKQIVLCMDADAAGQRAVERLCESPASSGLDSLSESGVSMSVATIPEGSGCKDPADYLQAHGAEAFRAEVIDKAVPWSDWHGDRILAEHDFTSDANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFARALAGGDEAMRHQLE 435
++++ + DAD AG+ A R GLD L +G + VA +PEG DP +L++ GA AF+ E++ KAVP S++ +IL+ ++ D +C + ++++S ++ ++ A + +EA+R +L+
Sbjct: 200 AEEVFIAFDADVAGENATWR--------GLDVLRSAGCQVRVAPLPEGD---DPDLFLRSKGAAAFQNEILQKAVPVSEYRLKQILSRYNL-QDRQEMLQCLHQSLLVLAEISDNLERDEYIRLLAGKFSVSEEALRLELK 328 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13252.5895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig13252.5895.1 >prot_M-pyrifera_M_contig13252.5895.1 ID=prot_M-pyrifera_M_contig13252.5895.1|Name=mRNA_M-pyrifera_M_contig13252.5895.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=500bp RYSRSKQIVLCMDADAAGQRAVERLCESPASSGLDSLSESGVSMSVATIPback to top mRNA from alignment at M-pyrifera_M_contig13252:1042..8431+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig13252.5895.1 ID=mRNA_M-pyrifera_M_contig13252.5895.1|Name=mRNA_M-pyrifera_M_contig13252.5895.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7390bp|location=Sequence derived from alignment at M-pyrifera_M_contig13252:1042..8431+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig13252:1042..8431+ >mRNA_M-pyrifera_M_contig13252.5895.1 ID=mRNA_M-pyrifera_M_contig13252.5895.1|Name=mRNA_M-pyrifera_M_contig13252.5895.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3000bp|location=Sequence derived from alignment at M-pyrifera_M_contig13252:1042..8431+ (Macrocystis pyrifera P11B4 male)back to top |