mRNA_M-pyrifera_M_contig13213.5883.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13213.5883.1
Unique NamemRNA_M-pyrifera_M_contig13213.5883.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13213.5883.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 249 bits (635), Expect = 4.130e-83
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:    7 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    6 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_M-pyrifera_M_contig13213.5883.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 248 bits (634), Expect = 4.800e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   10 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_M-pyrifera_M_contig13213.5883.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 247 bits (630), Expect = 1.960e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   10 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_M-pyrifera_M_contig13213.5883.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 247 bits (631), Expect = 2.200e-82
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   10 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
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BLAST of mRNA_M-pyrifera_M_contig13213.5883.1 vs. uniprot
Match: A0A224XSI9_9HEMI (Histone H3 (Fragment) n=2 Tax=Neoptera TaxID=33340 RepID=A0A224XSI9_9HEMI)

HSP 1 Score: 246 bits (628), Expect = 4.220e-82
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:    4 TTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            TTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 TTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138
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BLAST of mRNA_M-pyrifera_M_contig13213.5883.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 248 bits (634), Expect = 5.580e-82
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   10 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
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BLAST of mRNA_M-pyrifera_M_contig13213.5883.1 vs. uniprot
Match: F7BPK5_MONDO (Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=F7BPK5_MONDO)

HSP 1 Score: 245 bits (626), Expect = 8.810e-82
Identity = 132/139 (94.96%), Postives = 138/139 (99.28%), Query Frame = 1 
Query:    1 STTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            S+TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL+RKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 SSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLVRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
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BLAST of mRNA_M-pyrifera_M_contig13213.5883.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 1.130e-81
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   10 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig13213.5883.1 vs. uniprot
Match: A0A1I7S5W3_BURXY (Histone H3 n=1 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A1I7S5W3_BURXY)

HSP 1 Score: 246 bits (628), Expect = 1.200e-81
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 1 
Query:    1 STTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            S TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   31 SATMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 169
[Close]
BLAST of mRNA_M-pyrifera_M_contig13213.5883.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 244 bits (624), Expect = 1.610e-81
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   10 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 417
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13213.5883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P6C6_HETAK4.130e-8398.54Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
W4GZ05_9STRA4.800e-8399.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A1Z5K8H0_FISSO1.960e-8298.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA2.200e-8298.53Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A224XSI9_9HEMI4.220e-8296.38Histone H3 (Fragment) n=2 Tax=Neoptera TaxID=33340... [more]
K0S7I6_THAOC5.580e-8299.26Histone domain-containing protein n=8 Tax=Bacillar... [more]
F7BPK5_MONDO8.810e-8294.96Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=F7B... [more]
D7G4I9_ECTSI1.130e-8198.53Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A0A1I7S5W3_BURXY1.200e-8196.40Histone H3 n=1 Tax=Bursaphelenchus xylophilus TaxI... [more]
A7RJG4_NEMVE1.610e-8197.06Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13213contigM-pyrifera_M_contig13213:7698..8117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue6.9e-66
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size420
Cds size411
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.0862377-UTR-M-pyrifera_M_contig13213:7697..77061622815811.0862377-UTR-M-pyrifera_M_contig13213:7697..7706Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13213 7698..7706 +
1692277581.9892972-UTR-M-pyrifera_M_contig13213:7697..77061692277581.9892972-UTR-M-pyrifera_M_contig13213:7697..7706Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13213 7698..7706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.1010711-CDS-M-pyrifera_M_contig13213:7706..81171622815811.1010711-CDS-M-pyrifera_M_contig13213:7706..8117Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13213 7707..8117 +
1692277582.0028105-CDS-M-pyrifera_M_contig13213:7706..81171692277582.0028105-CDS-M-pyrifera_M_contig13213:7706..8117Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13213 7707..8117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13213.5883.1prot_M-pyrifera_M_contig13213.5883.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13213 7707..8117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13213.5883.1

>prot_M-pyrifera_M_contig13213.5883.1 ID=prot_M-pyrifera_M_contig13213.5883.1|Name=mRNA_M-pyrifera_M_contig13213.5883.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at M-pyrifera_M_contig13213:7698..8117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13213.5883.1 ID=mRNA_M-pyrifera_M_contig13213.5883.1|Name=mRNA_M-pyrifera_M_contig13213.5883.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig13213:7698..8117+ (Macrocystis pyrifera P11B4 male)
AGCACAACTATGGCTCGCACGAAACAAACCGCCCGTAAGTCCACCGGAGG
CAAGGCCCCCCGTAAGCAACTGGCCACTAAGGCCGCCCGTAAGTCCGCGC
CGGCTACCGGCGGTGTGAAGAAGCCCCACCGCTACAGGCCCGGAACCGTG
GCCCTGCGCGAGATCCGCCGCTACCAGAAGTCGACGGAGCTGCTCATCCG
CAAGCTCCCCTTCCAGCGCCTGGTGCGTGAGATCGCCCAGGACTTCAAGA
GCGACCTCCGCTTCCAGGGGTCTGCCGTGCTTGCCCTGCAGGAGGCCGCT
GAGGCTTACCTGGTGGGTCTGTTCGAGGACACGAACTTGTGCGCCATCCA
CGCCAAGCGCGTGACCATCATGCCCAAGGACATCCAACTGGCCCGCCGCA
TCCGCGGCGAGCGCTCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13213:7698..8117+

>mRNA_M-pyrifera_M_contig13213.5883.1 ID=mRNA_M-pyrifera_M_contig13213.5883.1|Name=mRNA_M-pyrifera_M_contig13213.5883.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig13213:7698..8117+ (Macrocystis pyrifera P11B4 male)
ATGGCTCGCACGAAACAAACCGCCCGTAAGTCCACCGGAGGCAAGGCCCC
CCGTAAGCAACTGGCCACTAAGGCCGCCCGTAAGTCCGCGCCGGCTACCG
GCGGTGTGAAGAAGCCCCACCGCTACAGGCCCGGAACCGTGGCCCTGCGC
GAGATCCGCCGCTACCAGAAGTCGACGGAGCTGCTCATCCGCAAGCTCCC
CTTCCAGCGCCTGGTGCGTGAGATCGCCCAGGACTTCAAGAGCGACCTCC
GCTTCCAGGGGTCTGCCGTGCTTGCCCTGCAGGAGGCCGCTGAGGCTTAC
CTGGTGGGTCTGTTCGAGGACACGAACTTGTGCGCCATCCACGCCAAGCG
CGTGACCATCATGCCCAAGGACATCCAACTGGCCCGCCGCATCCGCGGCG
AGCGCTCTTAGATGGCTCGCACGAAACAAACCGCCCGTAAGTCCACCGGA
GGCAAGGCCCCCCGTAAGCAACTGGCCACTAAGGCCGCCCGTAAGTCCGC
GCCGGCTACCGGCGGTGTGAAGAAGCCCCACCGCTACAGGCCCGGAACCG
TGGCCCTGCGCGAGATCCGCCGCTACCAGAAGTCGACGGAGCTGCTCATC
CGCAAGCTCCCCTTCCAGCGCCTGGTGCGTGAGATCGCCCAGGACTTCAA
GAGCGACCTCCGCTTCCAGGGGTCTGCCGTGCTTGCCCTGCAGGAGGCCG
CTGAGGCTTACCTGGTGGGTCTGTTCGAGGACACGAACTTGTGCGCCATC
CACGCCAAGCGCGTGACCATCATGCCCAAGGACATCCAACTGGCCCGCCG
CATCCGCGGCGAGCGCTCTTAG
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